Wall clock time and date at job start Sat Apr 11 2020 06:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 120.00213 * 2 1 4 4 H 1.48493 * 109.47261 * 240.00150 * 3 2 1 5 5 H 1.48497 * 109.47167 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46921 * 120.00043 * 3 2 1 7 7 C 1.38948 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00051 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00423 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00389 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99958 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00092 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47002 * 179.97438 * 12 10 9 14 14 C 1.46902 * 110.99762 * 180.02562 * 13 12 10 15 15 H 1.08995 * 109.52447 * 324.92147 * 14 13 12 16 16 C 1.53034 * 109.49774 * 85.00429 * 14 13 12 17 17 C 1.53035 * 109.54165 * 181.31698 * 16 14 13 18 18 C 1.53199 * 109.31146 * 298.63463 * 17 16 14 19 19 N 1.46927 * 108.77514 * 54.62952 * 18 17 16 20 20 C 1.34776 * 120.62528 * 126.36811 * 19 18 17 21 21 O 1.21284 * 119.99372 * 179.97438 * 20 19 18 22 22 C 1.50695 * 120.00361 * 0.02562 * 20 19 18 23 23 H 1.08997 * 110.62205 * 38.63006 * 22 20 19 24 24 C 1.54094 * 110.67423 * 275.86946 * 22 20 19 25 25 O 1.45703 * 104.00520 * 241.75079 * 24 22 20 26 26 C 1.33763 * 109.47834 * 359.75317 * 25 24 22 27 27 O 1.21519 * 123.06859 * 179.97438 * 26 25 24 28 28 N 1.34005 * 113.86068 * 359.97438 * 26 25 24 29 29 C 1.46921 * 118.73774 * 306.64819 * 19 18 17 30 30 H 0.97006 * 120.00019 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99584 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.46827 * 60.00473 * 12 10 9 33 33 H 1.09001 * 109.47020 * 299.99722 * 12 10 9 34 34 H 1.00898 * 110.99717 * 56.05156 * 13 12 10 35 35 H 1.08998 * 109.46634 * 61.29160 * 16 14 13 36 36 H 1.09010 * 109.45047 * 301.32985 * 16 14 13 37 37 H 1.08993 * 109.50222 * 178.68313 * 17 16 14 38 38 H 1.08997 * 109.52388 * 58.59699 * 17 16 14 39 39 H 1.09007 * 109.58263 * 294.84641 * 18 17 16 40 40 H 1.08997 * 109.58871 * 174.41914 * 18 17 16 41 41 H 1.08994 * 110.73204 * 123.01388 * 24 22 20 42 42 H 1.09004 * 110.42971 * 0.33229 * 24 22 20 43 43 H 0.97001 * 125.55884 * 179.97438 * 28 26 25 44 44 H 1.09007 * 109.58211 * 173.14459 * 29 19 18 45 45 H 1.09000 * 109.59011 * 293.56219 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1018 1.6964 -1.2124 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2100 -3.5579 -0.0001 12 6 1.2435 -4.8630 0.0000 13 7 2.1981 -5.9796 -0.0007 14 6 1.4977 -7.2709 -0.0008 15 1 0.5853 -7.1904 0.5900 16 6 1.1431 -7.6596 -1.4378 17 6 0.3845 -8.9887 -1.4363 18 6 1.2803 -10.0826 -0.8466 19 7 1.7438 -9.6507 0.4791 20 6 1.5643 -10.4369 1.5589 21 8 1.9519 -10.0692 2.6478 22 6 0.8831 -11.7732 1.4133 23 1 1.1881 -12.2607 0.4874 24 6 -0.6486 -11.6106 1.4572 25 8 -1.0514 -12.3792 2.6276 26 6 0.0297 -12.9220 3.1985 27 8 -0.0240 -13.6143 4.1958 28 7 1.1775 -12.6325 2.5703 29 6 2.4011 -8.3429 0.6061 30 1 -0.4850 0.8401 0.0004 31 1 0.3532 -2.3906 -0.0005 32 1 0.6165 -4.9209 -0.8898 33 1 0.6172 -4.9205 0.8903 34 1 2.8334 -5.9126 0.7802 35 1 2.0574 -7.7640 -2.0220 36 1 0.5166 -6.8844 -1.8795 37 1 0.1119 -9.2532 -2.4579 38 1 -0.5177 -8.8925 -0.8323 39 1 2.1385 -10.2434 -1.4993 40 1 0.7125 -11.0081 -0.7515 41 1 -1.1059 -12.0189 0.5560 42 1 -0.9166 -10.5611 1.5786 43 1 2.0591 -12.9358 2.8380 44 1 2.5725 -8.1209 1.6594 45 1 3.3525 -8.3588 0.0744 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207960436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:18 Heat of formation + Delta-G solvation = -161.131784 kcal Electronic energy + Delta-G solvation = -29549.148977 eV Core-core repulsion = 25179.826082 eV Total energy + Delta-G solvation = -4369.322895 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.98147 -41.16713 -40.18498 -38.89425 -38.36051 -36.45694 -35.88371 -35.73430 -33.37535 -33.22108 -31.86587 -30.46403 -27.93528 -26.95369 -25.95817 -24.85582 -23.59244 -23.53729 -21.72898 -21.15627 -20.29571 -19.90116 -19.34337 -18.96979 -18.09811 -17.83959 -17.58380 -17.02197 -16.68372 -16.44917 -16.33136 -16.06243 -15.66778 -15.50784 -15.37582 -15.34957 -15.17847 -14.85662 -14.61441 -14.36802 -14.13121 -13.83237 -13.60978 -13.48605 -13.36841 -13.17837 -12.89883 -12.44740 -12.36257 -12.13741 -12.08400 -11.99336 -11.81041 -11.80172 -11.62150 -11.51509 -11.50829 -10.39714 -10.36246 -10.03584 -9.81134 -9.40949 -8.48080 -5.96967 1.20794 1.29325 1.38946 1.41208 1.51979 1.60030 1.77067 2.03001 2.28239 2.51102 2.88760 3.02040 3.13127 3.18987 3.44969 3.68057 3.74909 3.90814 3.95097 4.08363 4.10508 4.27823 4.28897 4.36619 4.41546 4.45024 4.54639 4.55215 4.70357 4.79584 4.82925 5.02685 5.10134 5.27985 5.33799 5.39531 5.50159 5.61418 5.86644 6.03635 6.06525 6.23177 6.30103 6.57985 6.83257 6.93380 7.10778 7.54030 8.09160 8.68977 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022739 B = 0.001925 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.052661 B =14540.510396 C =14827.667602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.572 5.572 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.069 3.931 13 N -0.673 5.673 14 C 0.078 3.922 15 H 0.044 0.956 16 C -0.111 4.111 17 C -0.129 4.129 18 C 0.093 3.907 19 N -0.592 5.592 20 C 0.500 3.500 21 O -0.576 6.576 22 C 0.084 3.916 23 H 0.184 0.816 24 C 0.049 3.951 25 O -0.338 6.338 26 C 0.648 3.352 27 O -0.571 6.571 28 N -0.702 5.702 29 C 0.115 3.885 30 H 0.278 0.722 31 H 0.397 0.603 32 H 0.108 0.892 33 H 0.060 0.940 34 H 0.342 0.658 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.177 0.823 42 H 0.110 0.890 43 H 0.445 0.555 44 H 0.066 0.934 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.206 -26.613 -7.783 28.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.464 4.464 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.510 6.510 12 C -0.063 4.063 13 N -0.305 5.305 14 C -0.032 4.032 15 H 0.062 0.938 16 C -0.150 4.150 17 C -0.168 4.168 18 C -0.028 4.028 19 N -0.325 5.325 20 C 0.286 3.714 21 O -0.454 6.454 22 C -0.025 4.025 23 H 0.201 0.799 24 C -0.025 4.025 25 O -0.248 6.248 26 C 0.401 3.599 27 O -0.459 6.459 28 N -0.374 5.374 29 C -0.008 4.008 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.126 0.874 33 H 0.078 0.922 34 H 0.161 0.839 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.127 0.873 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.144 0.856 41 H 0.195 0.805 42 H 0.128 0.872 43 H 0.289 0.711 44 H 0.084 0.916 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.702 -26.565 -7.376 27.818 hybrid contribution 0.337 1.451 1.392 2.038 sum -3.365 -25.115 -5.985 26.036 Atomic orbital electron populations 1.69662 1.06799 1.29401 1.50161 1.26046 0.96575 1.02436 0.96240 0.84989 0.77772 0.76636 0.78957 1.19584 1.19470 1.19835 1.19626 0.92711 0.84027 1.50078 0.90314 1.41928 1.09343 1.04732 1.64965 1.20864 0.88266 0.86162 0.82297 1.90494 1.15841 1.87951 1.56678 1.21543 0.93900 0.88005 1.02879 1.60164 1.18778 1.00510 1.51069 1.21841 0.95346 0.87585 0.98393 0.93814 1.21589 1.01121 0.98125 0.94134 1.21961 0.98194 0.92975 1.03634 1.22359 1.00046 0.99011 0.81356 1.48124 1.57862 1.17386 1.09114 1.21178 0.79554 0.86976 0.83687 1.90794 1.51983 1.74657 1.28002 1.22704 0.96816 0.89194 0.93820 0.79902 1.24823 0.89818 0.99035 0.88873 1.87281 1.30856 1.63378 1.43251 1.18584 0.80466 0.78795 0.82044 1.91054 1.85924 1.43057 1.25874 1.45711 1.09673 1.51916 1.30109 1.21463 0.95961 0.82058 1.01345 0.91256 0.76962 0.87430 0.92201 0.83914 0.91251 0.92211 0.87256 0.90749 0.88793 0.85562 0.80543 0.87167 0.71093 0.91555 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.21 13.05 21.66 0.28 -48.93 16 2 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 3 Si 0.99 42.67 29.55 68.60 2.03 44.70 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.33 -18.92 9.68 84.04 0.81 -18.10 16 8 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 9 N -0.57 -29.07 5.29 -306.98 -1.62 -30.69 16 10 C 0.44 20.42 7.82 87.66 0.69 21.11 16 11 O -0.62 -34.14 15.78 -3.07 -0.05 -34.19 16 12 C 0.07 2.26 5.97 85.56 0.51 2.77 16 13 N -0.67 -19.56 5.94 -495.91 -2.94 -22.50 16 14 C 0.08 1.54 2.63 44.85 0.12 1.65 16 15 H 0.04 0.89 7.80 -2.39 -0.02 0.87 16 16 C -0.11 -1.55 5.40 30.62 0.17 -1.39 16 17 C -0.13 -0.53 6.08 30.67 0.19 -0.35 16 18 C 0.09 0.13 6.24 86.36 0.54 0.67 16 19 N -0.59 -6.38 2.98 -819.72 -2.44 -8.82 16 20 C 0.50 7.06 6.81 87.66 0.60 7.65 16 21 O -0.58 -15.08 16.01 -3.04 -0.05 -15.13 16 22 C 0.08 0.47 3.14 44.50 0.14 0.61 16 23 H 0.18 -0.92 6.78 -2.39 -0.02 -0.93 16 24 C 0.05 0.21 7.46 72.35 0.54 0.75 16 25 O -0.34 -5.67 11.09 -47.24 -0.52 -6.20 16 26 C 0.65 13.81 9.16 129.91 1.19 15.00 16 27 O -0.57 -17.79 18.04 19.63 0.35 -17.44 16 28 N -0.70 -9.25 5.66 -573.42 -3.24 -12.49 16 29 C 0.12 2.09 5.67 86.22 0.49 2.58 16 30 H 0.28 13.95 8.31 -92.70 -0.77 13.18 16 31 H 0.40 19.05 7.90 -92.71 -0.73 18.31 16 32 H 0.11 3.09 7.41 -2.39 -0.02 3.07 16 33 H 0.06 1.79 8.06 -2.39 -0.02 1.77 16 34 H 0.34 10.98 8.06 -89.70 -0.72 10.25 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 0.98 7.43 -2.38 -0.02 0.97 16 37 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.09 0.01 8.14 -2.38 -0.02 -0.01 16 40 H 0.13 -0.91 5.39 -2.39 -0.01 -0.92 16 41 H 0.18 -1.12 8.14 -2.39 -0.02 -1.14 16 42 H 0.11 0.53 7.72 -2.39 -0.02 0.52 16 43 H 0.44 5.12 8.96 -92.71 -0.83 4.29 16 44 H 0.07 1.59 7.01 -2.38 -0.02 1.57 16 45 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -88.59 373.09 -2.98 -91.57 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: -1.21 Total: 27.39 kcal Atomic # 6 Polarization: 26.30 SS G_CDS: 6.44 Total: 32.74 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -9.97 Total: -123.44 kcal Atomic # 8 Polarization: -72.69 SS G_CDS: -0.27 Total: -72.96 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -88.59 -2.98 -91.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207960436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.564 kcal (2) G-P(sol) polarization free energy of solvation -88.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds