Wall clock time and date at job start Sat Apr 11 2020 06:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86806 * 119.99565 * 2 1 4 4 H 1.48492 * 109.47076 * 239.99811 * 3 2 1 5 5 H 1.48496 * 109.47032 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46754 * 120.00136 * 3 2 1 7 7 C 1.38942 * 120.00334 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00123 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00304 * 359.97438 * 7 2 1 10 10 C 1.34772 * 120.00163 * 179.97438 * 9 7 2 11 11 O 1.21285 * 120.00080 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99865 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47060 * 180.02562 * 12 10 9 14 14 C 1.46903 * 110.99931 * 180.02562 * 13 12 10 15 15 H 1.08995 * 109.52525 * 324.92404 * 14 13 12 16 16 C 1.53046 * 109.49439 * 85.00053 * 14 13 12 17 17 C 1.53046 * 109.53579 * 181.31473 * 16 14 13 18 18 C 1.53187 * 109.31363 * 298.63645 * 17 16 14 19 19 N 1.46928 * 108.77625 * 54.63376 * 18 17 16 20 20 C 1.34775 * 120.62932 * 126.41524 * 19 18 17 21 21 O 1.21288 * 120.00275 * 179.97438 * 20 19 18 22 22 C 1.50700 * 120.00217 * 359.97291 * 20 19 18 23 23 H 1.09002 * 110.50713 * 319.30263 * 22 20 19 24 24 C 1.54091 * 110.56404 * 82.04531 * 22 20 19 25 25 O 1.46047 * 103.84654 * 118.53196 * 24 22 20 26 26 C 1.33773 * 109.50476 * 0.12155 * 25 24 22 27 27 O 1.21513 * 123.06410 * 179.87852 * 26 25 24 28 28 N 1.33998 * 113.86021 * 359.91837 * 26 25 24 29 29 C 1.46921 * 118.73936 * 306.39044 * 19 18 17 30 30 H 0.96996 * 120.00536 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99251 * 0.02562 * 9 7 2 32 32 H 1.09003 * 109.46607 * 60.00725 * 12 10 9 33 33 H 1.09001 * 109.47006 * 300.00907 * 12 10 9 34 34 H 1.00898 * 111.00340 * 56.04629 * 13 12 10 35 35 H 1.08993 * 109.45866 * 301.33648 * 16 14 13 36 36 H 1.09000 * 109.45949 * 61.29984 * 16 14 13 37 37 H 1.09001 * 109.49519 * 58.58791 * 17 16 14 38 38 H 1.08996 * 109.49601 * 178.68448 * 17 16 14 39 39 H 1.09000 * 109.59097 * 294.84726 * 18 17 16 40 40 H 1.09002 * 109.70548 * 174.49212 * 18 17 16 41 41 H 1.08994 * 110.52447 * 237.20793 * 24 22 20 42 42 H 1.09004 * 110.51904 * 359.94138 * 24 22 20 43 43 H 0.97000 * 125.55694 * 179.97438 * 28 26 25 44 44 H 1.08996 * 109.58905 * 293.82203 * 29 19 18 45 45 H 1.09001 * 109.70481 * 173.46556 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.1017 1.6966 -1.2124 5 1 1.2829 2.7465 0.0006 6 1 3.1018 1.6965 1.2126 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9975 -3.5577 -0.0016 11 8 3.2103 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 7 2.1987 -5.9794 -0.0027 14 6 1.4984 -7.2708 -0.0039 15 1 0.5855 -7.1907 0.5862 16 6 1.1449 -7.6588 -1.4415 17 6 0.3865 -8.9881 -1.4411 18 6 1.2820 -10.0821 -0.8513 19 7 1.7444 -9.6508 0.4750 20 6 1.5651 -10.4379 1.5542 21 8 1.9517 -10.0707 2.6436 22 6 0.8841 -11.7742 1.4075 23 1 0.0389 -11.6990 0.7232 24 6 1.8835 -12.8401 0.9182 25 8 1.9035 -13.8226 1.9987 26 6 1.0695 -13.4350 2.9702 27 8 0.8943 -14.0753 3.9880 28 7 0.4446 -12.2769 2.7181 29 6 2.4065 -8.3454 0.6022 30 1 -0.4851 0.8400 0.0004 31 1 0.3535 -2.3906 -0.0005 32 1 0.6171 -4.9201 -0.8921 33 1 0.6176 -4.9212 0.8880 34 1 2.8335 -5.9127 0.7787 35 1 0.5189 -6.8836 -1.8833 36 1 2.0598 -7.7629 -2.0249 37 1 -0.5159 -8.8918 -0.8374 38 1 0.1147 -9.2521 -2.4630 39 1 2.1406 -10.2425 -1.5032 40 1 0.7163 -11.0091 -0.7574 41 1 1.5336 -13.2952 -0.0084 42 1 2.8721 -12.4023 0.7804 43 1 -0.1939 -11.8412 3.3042 44 1 3.3568 -8.3641 0.0687 45 1 2.5827 -8.1237 1.6548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207960438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:23 Heat of formation + Delta-G solvation = -127.244387 kcal Electronic energy + Delta-G solvation = -29425.266844 eV Core-core repulsion = 25057.413417 eV Total energy + Delta-G solvation = -4367.853427 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.35812 -40.48176 -38.60342 -37.87083 -37.53074 -35.42350 -35.15566 -33.92043 -32.67690 -31.35589 -31.05351 -29.71675 -26.48875 -26.38068 -24.72402 -23.89282 -22.95981 -22.85961 -20.92712 -19.87953 -19.26433 -18.78012 -18.31589 -17.94672 -17.47066 -16.95251 -16.37351 -16.10722 -15.56235 -15.42828 -15.15988 -14.95671 -14.79910 -14.66731 -14.49727 -14.26155 -14.07807 -13.90787 -13.75296 -13.57971 -13.31985 -12.93394 -12.65771 -12.32042 -12.02173 -11.62795 -11.56606 -11.44761 -11.31932 -11.17407 -11.14089 -10.99267 -10.93259 -10.82300 -10.47275 -10.25313 -9.78650 -9.54167 -9.19678 -8.54044 -8.20234 -8.00873 -6.45652 -3.86740 1.79840 1.94963 2.20711 2.41107 2.95231 3.17402 3.23460 3.27758 3.37941 3.58676 3.84989 3.89540 3.98503 4.17310 4.30261 4.41274 4.43705 4.48529 4.58761 4.69026 4.74767 4.88105 5.04779 5.06721 5.18786 5.23018 5.33084 5.47055 5.55144 5.63325 5.71138 5.84230 5.88467 5.92213 6.08482 6.21752 6.22925 6.65978 6.75316 7.07524 7.45717 7.51173 7.51491 7.59856 8.01515 8.56361 9.13526 9.49322 10.00428 10.71894 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027241 B = 0.001848 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.599638 B =15146.764105 C =15523.054894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.053 3.947 13 N -0.661 5.661 14 C 0.075 3.925 15 H 0.046 0.954 16 C -0.111 4.111 17 C -0.136 4.136 18 C 0.099 3.901 19 N -0.601 5.601 20 C 0.502 3.498 21 O -0.516 6.516 22 C 0.075 3.925 23 H 0.129 0.871 24 C 0.056 3.944 25 O -0.322 6.322 26 C 0.652 3.348 27 O -0.515 6.515 28 N -0.710 5.710 29 C 0.110 3.890 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.352 0.648 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.122 0.878 42 H 0.111 0.889 43 H 0.441 0.559 44 H 0.085 0.915 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.887 -24.680 -5.134 25.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.467 6.467 12 C -0.080 4.080 13 N -0.294 5.294 14 C -0.036 4.036 15 H 0.064 0.936 16 C -0.150 4.150 17 C -0.174 4.174 18 C -0.023 4.023 19 N -0.335 5.335 20 C 0.287 3.713 21 O -0.390 6.390 22 C -0.035 4.035 23 H 0.146 0.854 24 C -0.020 4.020 25 O -0.232 6.232 26 C 0.404 3.596 27 O -0.399 6.399 28 N -0.383 5.383 29 C -0.013 4.013 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.172 0.828 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.140 0.860 42 H 0.130 0.870 43 H 0.285 0.715 44 H 0.103 0.897 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.718 -24.935 -4.776 25.533 hybrid contribution -1.016 1.418 0.897 1.961 sum -3.734 -23.517 -3.879 24.125 Atomic orbital electron populations 1.69598 1.05945 1.28327 1.50421 1.25270 0.95650 0.99769 0.97234 0.85907 0.78764 0.80384 0.79108 1.19852 1.20966 1.19889 1.19655 0.93362 0.82206 1.47774 0.87936 1.41854 1.09193 1.04610 1.64242 1.19762 0.88383 0.84671 0.84684 1.90526 1.13714 1.87023 1.55454 1.21713 0.94262 0.90857 1.01177 1.60092 1.18718 0.99257 1.51329 1.21832 0.95822 0.89430 0.96510 0.93598 1.21570 1.00997 0.95944 0.96450 1.21948 0.98568 0.95223 1.01685 1.21977 0.99069 0.97869 0.83422 1.48069 1.58781 1.18854 1.07827 1.20524 0.80268 0.85955 0.84564 1.90806 1.49262 1.73348 1.25625 1.22359 0.99618 0.93503 0.88045 0.85361 1.24323 1.01003 0.86323 0.90346 1.87368 1.60234 1.46007 1.29608 1.18403 0.77352 0.80883 0.82960 1.91111 1.66150 1.58442 1.24177 1.45693 1.47765 1.23629 1.21233 1.21828 0.95654 0.80612 1.03197 0.91784 0.77474 0.89570 0.93826 0.82781 0.91091 0.90616 0.91401 0.89929 0.90067 0.89933 0.85987 0.87046 0.71454 0.89724 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.17 13.05 55.50 0.72 -23.45 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.30 -8.26 9.68 -14.94 -0.14 -8.40 16 8 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 9 N -0.56 -13.95 5.29 -10.97 -0.06 -14.00 16 10 C 0.44 10.05 7.82 -10.98 -0.09 9.96 16 11 O -0.58 -15.42 15.78 5.55 0.09 -15.34 16 12 C 0.05 0.87 5.97 -4.98 -0.03 0.84 16 13 N -0.66 -9.58 5.93 -107.86 -0.64 -10.22 16 14 C 0.08 0.78 2.64 -67.59 -0.18 0.60 16 15 H 0.05 0.50 7.80 -51.93 -0.41 0.10 16 16 C -0.11 -0.92 5.40 -26.68 -0.14 -1.07 16 17 C -0.14 -0.63 6.08 -26.61 -0.16 -0.79 16 18 C 0.10 0.32 6.25 -3.71 -0.02 0.30 16 19 N -0.60 -4.02 2.97 -172.77 -0.51 -4.54 16 20 C 0.50 4.05 6.81 -10.99 -0.07 3.98 16 21 O -0.52 -6.68 16.00 5.55 0.09 -6.59 16 22 C 0.08 0.36 3.16 -68.19 -0.22 0.14 16 23 H 0.13 0.14 6.64 -51.93 -0.34 -0.20 16 24 C 0.06 0.21 7.62 37.73 0.29 0.50 16 25 O -0.32 -2.87 11.10 -37.84 -0.42 -3.29 16 26 C 0.65 7.03 9.16 53.71 0.49 7.52 16 27 O -0.52 -7.70 18.04 -19.12 -0.34 -8.05 16 28 N -0.71 -5.33 5.64 -59.36 -0.33 -5.66 16 29 C 0.11 1.02 5.69 -3.71 -0.02 1.00 16 30 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.39 9.27 7.90 -40.82 -0.32 8.94 16 32 H 0.09 1.29 7.42 -51.93 -0.39 0.91 16 33 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 34 H 0.35 5.43 8.07 -39.29 -0.32 5.11 16 35 H 0.07 0.67 7.43 -51.93 -0.39 0.29 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.08 0.01 5.42 -51.93 -0.28 -0.27 16 41 H 0.12 -0.02 8.14 -51.93 -0.42 -0.45 16 42 H 0.11 0.37 7.72 -51.93 -0.40 -0.03 16 43 H 0.44 2.91 8.96 -40.82 -0.37 2.54 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 1.06 7.01 -51.93 -0.36 0.70 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -37.39 373.20 -7.24 -44.63 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.04 Total: 10.03 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: -0.40 Total: 15.07 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.82 Total: -57.87 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -0.59 Total: -33.26 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.39 -7.24 -44.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207960438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.612 kcal (2) G-P(sol) polarization free energy of solvation -37.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds