Wall clock time and date at job start Sat Apr 11 2020 06:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86806 * 119.99565 * 2 1 4 4 H 1.48492 * 109.47076 * 239.99811 * 3 2 1 5 5 H 1.48496 * 109.47032 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46754 * 120.00136 * 3 2 1 7 7 C 1.38942 * 120.00334 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00123 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00304 * 359.97438 * 7 2 1 10 10 C 1.34772 * 120.00163 * 179.97438 * 9 7 2 11 11 O 1.21285 * 120.00080 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99865 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47060 * 180.02562 * 12 10 9 14 14 C 1.46903 * 110.99931 * 180.02562 * 13 12 10 15 15 H 1.08995 * 109.52525 * 324.92404 * 14 13 12 16 16 C 1.53046 * 109.49439 * 85.00053 * 14 13 12 17 17 C 1.53046 * 109.53579 * 181.31473 * 16 14 13 18 18 C 1.53187 * 109.31363 * 298.63645 * 17 16 14 19 19 N 1.46928 * 108.77625 * 54.63376 * 18 17 16 20 20 C 1.34775 * 120.62932 * 126.41524 * 19 18 17 21 21 O 1.21288 * 120.00275 * 179.97438 * 20 19 18 22 22 C 1.50700 * 120.00217 * 359.97291 * 20 19 18 23 23 H 1.09002 * 110.50713 * 319.30263 * 22 20 19 24 24 C 1.54091 * 110.56404 * 82.04531 * 22 20 19 25 25 O 1.46047 * 103.84654 * 118.53196 * 24 22 20 26 26 C 1.33773 * 109.50476 * 0.12155 * 25 24 22 27 27 O 1.21513 * 123.06410 * 179.87852 * 26 25 24 28 28 N 1.33998 * 113.86021 * 359.91837 * 26 25 24 29 29 C 1.46921 * 118.73936 * 306.39044 * 19 18 17 30 30 H 0.96996 * 120.00536 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99251 * 0.02562 * 9 7 2 32 32 H 1.09003 * 109.46607 * 60.00725 * 12 10 9 33 33 H 1.09001 * 109.47006 * 300.00907 * 12 10 9 34 34 H 1.00898 * 111.00340 * 56.04629 * 13 12 10 35 35 H 1.08993 * 109.45866 * 301.33648 * 16 14 13 36 36 H 1.09000 * 109.45949 * 61.29984 * 16 14 13 37 37 H 1.09001 * 109.49519 * 58.58791 * 17 16 14 38 38 H 1.08996 * 109.49601 * 178.68448 * 17 16 14 39 39 H 1.09000 * 109.59097 * 294.84726 * 18 17 16 40 40 H 1.09002 * 109.70548 * 174.49212 * 18 17 16 41 41 H 1.08994 * 110.52447 * 237.20793 * 24 22 20 42 42 H 1.09004 * 110.51904 * 359.94138 * 24 22 20 43 43 H 0.97000 * 125.55694 * 179.97438 * 28 26 25 44 44 H 1.08996 * 109.58905 * 293.82203 * 29 19 18 45 45 H 1.09001 * 109.70481 * 173.46556 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.1017 1.6966 -1.2124 5 1 1.2829 2.7465 0.0006 6 1 3.1018 1.6965 1.2126 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9975 -3.5577 -0.0016 11 8 3.2103 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 7 2.1987 -5.9794 -0.0027 14 6 1.4984 -7.2708 -0.0039 15 1 0.5855 -7.1907 0.5862 16 6 1.1449 -7.6588 -1.4415 17 6 0.3865 -8.9881 -1.4411 18 6 1.2820 -10.0821 -0.8513 19 7 1.7444 -9.6508 0.4750 20 6 1.5651 -10.4379 1.5542 21 8 1.9517 -10.0707 2.6436 22 6 0.8841 -11.7742 1.4075 23 1 0.0389 -11.6990 0.7232 24 6 1.8835 -12.8401 0.9182 25 8 1.9035 -13.8226 1.9987 26 6 1.0695 -13.4350 2.9702 27 8 0.8943 -14.0753 3.9880 28 7 0.4446 -12.2769 2.7181 29 6 2.4065 -8.3454 0.6022 30 1 -0.4851 0.8400 0.0004 31 1 0.3535 -2.3906 -0.0005 32 1 0.6171 -4.9201 -0.8921 33 1 0.6176 -4.9212 0.8880 34 1 2.8335 -5.9127 0.7787 35 1 0.5189 -6.8836 -1.8833 36 1 2.0598 -7.7629 -2.0249 37 1 -0.5159 -8.8918 -0.8374 38 1 0.1147 -9.2521 -2.4630 39 1 2.1406 -10.2425 -1.5032 40 1 0.7163 -11.0091 -0.7574 41 1 1.5336 -13.2952 -0.0084 42 1 2.8721 -12.4023 0.7804 43 1 -0.1939 -11.8412 3.3042 44 1 3.3568 -8.3641 0.0687 45 1 2.5827 -8.1237 1.6548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207960438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:22 Heat of formation + Delta-G solvation = -160.794467 kcal Electronic energy + Delta-G solvation = -29426.721684 eV Core-core repulsion = 25057.413417 eV Total energy + Delta-G solvation = -4369.308268 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.95275 -41.15393 -40.18731 -38.88569 -38.33945 -36.45605 -35.87506 -35.72992 -33.38578 -33.22812 -31.84321 -30.45170 -27.93347 -26.94309 -25.95474 -24.86389 -23.60814 -23.50271 -21.65947 -21.16177 -20.38286 -19.91126 -19.32750 -18.85990 -18.19816 -17.81644 -17.57758 -16.98956 -16.75290 -16.47605 -16.23248 -16.09044 -15.69388 -15.50880 -15.33685 -15.30263 -15.15952 -14.90553 -14.57067 -14.36393 -14.14706 -13.84500 -13.59659 -13.48280 -13.35157 -13.20003 -12.89977 -12.44913 -12.36760 -12.13802 -12.07623 -11.98841 -11.81059 -11.80058 -11.63429 -11.51647 -11.50495 -10.39308 -10.35988 -10.03742 -9.80982 -9.41095 -8.48198 -5.97153 1.19770 1.33357 1.38858 1.41133 1.51906 1.59274 1.77845 2.02764 2.28062 2.49786 2.89864 3.01164 3.14258 3.18800 3.44678 3.67094 3.75764 3.88350 3.95655 4.10386 4.10760 4.27249 4.28753 4.38550 4.40991 4.44701 4.54144 4.56322 4.70118 4.79588 4.83600 5.01852 5.09736 5.27250 5.33104 5.39420 5.49504 5.60843 5.86425 6.04164 6.06292 6.23517 6.30068 6.57789 6.83541 6.93820 7.10608 7.53799 8.08914 8.68838 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027241 B = 0.001848 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.599638 B =15146.764105 C =15523.054894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.572 5.572 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.069 3.931 13 N -0.673 5.673 14 C 0.079 3.921 15 H 0.043 0.957 16 C -0.111 4.111 17 C -0.129 4.129 18 C 0.092 3.908 19 N -0.592 5.592 20 C 0.499 3.501 21 O -0.576 6.576 22 C 0.082 3.918 23 H 0.182 0.818 24 C 0.051 3.949 25 O -0.339 6.339 26 C 0.649 3.351 27 O -0.572 6.572 28 N -0.704 5.704 29 C 0.115 3.885 30 H 0.278 0.722 31 H 0.396 0.604 32 H 0.107 0.893 33 H 0.060 0.940 34 H 0.342 0.658 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.127 0.873 41 H 0.177 0.823 42 H 0.115 0.885 43 H 0.444 0.556 44 H 0.086 0.914 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.223 -26.046 -7.582 27.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.464 4.464 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.509 6.509 12 C -0.063 4.063 13 N -0.305 5.305 14 C -0.031 4.031 15 H 0.061 0.939 16 C -0.150 4.150 17 C -0.167 4.167 18 C -0.029 4.029 19 N -0.325 5.325 20 C 0.286 3.714 21 O -0.455 6.455 22 C -0.027 4.027 23 H 0.199 0.801 24 C -0.023 4.023 25 O -0.248 6.248 26 C 0.402 3.598 27 O -0.460 6.460 28 N -0.375 5.375 29 C -0.008 4.008 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.125 0.875 33 H 0.078 0.922 34 H 0.161 0.839 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.126 0.874 39 H 0.117 0.883 40 H 0.145 0.855 41 H 0.195 0.805 42 H 0.133 0.867 43 H 0.288 0.712 44 H 0.104 0.896 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.093 -26.304 -7.308 27.606 hybrid contribution -0.551 1.864 1.574 2.501 sum -4.644 -24.440 -5.735 25.530 Atomic orbital electron populations 1.69657 1.06795 1.29405 1.50166 1.26045 0.96575 1.02434 0.96236 0.84989 0.77771 0.76636 0.78954 1.19600 1.19462 1.19831 1.19627 0.92720 0.84024 1.50078 0.90304 1.41928 1.09336 1.04730 1.64974 1.20856 0.88265 0.86153 0.82307 1.90493 1.15831 1.87942 1.56654 1.21537 0.93903 0.88040 1.02836 1.60153 1.18815 1.00506 1.51046 1.21918 0.95268 0.87573 0.98323 0.93947 1.21590 1.01137 0.98026 0.94198 1.21939 0.98127 0.93183 1.03474 1.22388 1.00139 0.98978 0.81364 1.48125 1.57786 1.17383 1.09198 1.21176 0.79473 0.86990 0.83781 1.90795 1.51794 1.74871 1.28013 1.22714 1.01203 0.91344 0.87421 0.80150 1.24898 1.01447 0.85380 0.90599 1.87330 1.59581 1.47500 1.30407 1.18559 0.77387 0.81216 0.82667 1.91054 1.68061 1.60286 1.26573 1.45723 1.46810 1.22588 1.22404 1.21553 0.95859 0.82040 1.01387 0.91256 0.76972 0.87500 0.92230 0.83880 0.92345 0.91076 0.91271 0.87351 0.88314 0.85509 0.80526 0.86674 0.71215 0.89629 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.11 13.05 21.66 0.28 -48.83 16 2 C -0.01 -0.69 5.50 84.92 0.47 -0.22 16 3 Si 0.99 42.60 29.55 68.60 2.03 44.63 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.33 -18.90 9.68 84.04 0.81 -18.08 16 8 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 9 N -0.57 -29.03 5.29 -307.00 -1.62 -30.66 16 10 C 0.44 20.41 7.82 87.66 0.69 21.09 16 11 O -0.62 -34.08 15.78 -3.04 -0.05 -34.13 16 12 C 0.07 2.27 5.97 85.56 0.51 2.78 16 13 N -0.67 -19.56 5.93 -495.16 -2.94 -22.49 16 14 C 0.08 1.56 2.64 44.99 0.12 1.68 16 15 H 0.04 0.88 7.80 -2.39 -0.02 0.86 16 16 C -0.11 -1.58 5.40 30.63 0.17 -1.41 16 17 C -0.13 -0.61 6.08 30.67 0.19 -0.42 16 18 C 0.09 0.11 6.25 86.36 0.54 0.65 16 19 N -0.59 -6.31 2.97 -818.92 -2.43 -8.75 16 20 C 0.50 7.02 6.81 87.66 0.60 7.61 16 21 O -0.58 -15.05 16.00 -3.06 -0.05 -15.10 16 22 C 0.08 0.46 3.16 44.50 0.14 0.60 16 23 H 0.18 -0.81 6.64 -2.39 -0.02 -0.83 16 24 C 0.05 0.17 7.62 72.35 0.55 0.72 16 25 O -0.34 -5.41 11.10 -47.33 -0.53 -5.94 16 26 C 0.65 13.67 9.16 129.91 1.19 14.86 16 27 O -0.57 -17.72 18.04 19.64 0.35 -17.37 16 28 N -0.70 -9.47 5.64 -573.42 -3.23 -12.71 16 29 C 0.12 2.08 5.69 86.36 0.49 2.57 16 30 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 31 H 0.40 19.02 7.90 -92.71 -0.73 18.29 16 32 H 0.11 3.08 7.42 -2.39 -0.02 3.06 16 33 H 0.06 1.78 8.06 -2.39 -0.02 1.76 16 34 H 0.34 10.96 8.07 -89.70 -0.72 10.24 16 35 H 0.06 0.98 7.43 -2.39 -0.02 0.97 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 40 H 0.13 -0.92 5.42 -2.39 -0.01 -0.94 16 41 H 0.18 -1.30 8.14 -2.39 -0.02 -1.32 16 42 H 0.12 0.35 7.72 -2.38 -0.02 0.33 16 43 H 0.44 5.49 8.96 -92.71 -0.83 4.66 16 44 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.07 1.58 7.01 -2.39 -0.02 1.57 16 Total: -1.00 -88.47 373.20 -2.94 -91.41 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -1.21 Total: 27.51 kcal Atomic # 6 Polarization: 25.97 SS G_CDS: 6.46 Total: 32.43 kcal Atomic # 7 Polarization: -113.49 SS G_CDS: -9.95 Total: -123.44 kcal Atomic # 8 Polarization: -72.27 SS G_CDS: -0.27 Total: -72.54 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -88.47 -2.94 -91.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207960438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.386 kcal (2) G-P(sol) polarization free energy of solvation -88.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds