Wall clock time and date at job start Sat Apr 11 2020 06:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48499 * 109.47268 * 269.99735 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99994 * 3 2 1 6 6 H 1.48505 * 109.46734 * 149.99787 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.47276 * 111.00247 * 291.56716 * 13 12 10 15 15 C 1.54157 * 106.40564 * 219.39298 * 14 13 12 16 16 H 1.08999 * 111.00399 * 146.28802 * 15 14 13 17 17 O 1.42316 * 109.42968 * 268.29573 * 15 14 13 18 18 C 1.43250 * 113.36132 * 173.09520 * 17 15 14 19 19 C 1.53060 * 107.86123 * 290.58206 * 18 17 15 20 20 N 1.45530 * 110.10245 * 49.17574 * 19 18 17 21 21 C 1.34775 * 117.48874 * 153.58635 * 20 19 18 22 22 O 1.21280 * 119.99720 * 179.97438 * 21 20 19 23 23 C 1.50696 * 120.00193 * 359.97438 * 21 20 19 24 24 C 1.50703 * 109.47285 * 180.02562 * 23 21 20 25 25 N 1.34782 * 119.99808 * 180.02562 * 24 23 21 26 26 O 1.21277 * 119.99595 * 0.02562 * 24 23 21 27 27 C 1.44680 * 125.01890 * 333.56402 * 20 19 18 28 28 H 1.09001 * 108.84645 * 138.59765 * 27 20 19 29 29 C 1.47192 * 110.99573 * 169.99840 * 13 12 10 30 30 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 33 33 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 34 34 H 1.08997 * 110.07191 * 338.63655 * 14 13 12 35 35 H 1.09005 * 110.06628 * 100.15936 * 14 13 12 36 36 H 1.09000 * 109.78269 * 50.17275 * 18 17 15 37 37 H 1.09002 * 109.78327 * 170.93801 * 18 17 15 38 38 H 1.08997 * 109.37043 * 169.36999 * 19 18 17 39 39 H 1.08997 * 109.36642 * 289.11714 * 19 18 17 40 40 H 1.09008 * 109.47465 * 300.00286 * 23 21 20 41 41 H 1.09003 * 109.46997 * 59.99965 * 23 21 20 42 42 H 0.96994 * 120.00476 * 359.97438 * 25 24 23 43 43 H 0.97000 * 119.99161 * 180.02562 * 25 24 23 44 44 H 1.09007 * 109.82287 * 243.16381 * 29 13 12 45 45 H 1.08995 * 109.82726 * 4.03639 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.9258 -6.0516 -1.2803 15 6 3.0564 -7.5489 -1.6231 16 1 3.0139 -7.7082 -2.7005 17 8 4.2801 -8.0500 -1.0970 18 6 4.4164 -9.4698 -1.2300 19 6 3.4096 -10.1288 -0.2841 20 7 2.0929 -9.5353 -0.4628 21 6 1.0218 -10.2948 -0.1589 22 8 -0.0970 -9.8455 -0.2904 23 6 1.2143 -11.7022 0.3441 24 6 -0.1302 -12.3300 0.6073 25 7 -0.2050 -13.5949 1.0667 26 8 -1.1448 -11.6970 0.4057 27 6 1.8454 -8.1925 -0.9411 28 1 1.0057 -8.2153 -1.6357 29 6 1.5128 -7.2598 0.2365 30 1 -0.4850 0.8401 -0.0004 31 1 0.3535 -2.3906 0.0002 32 1 0.6170 -4.9209 0.8886 33 1 0.6176 -4.9205 -0.8913 34 1 2.3639 -5.5370 -2.0597 35 1 3.9143 -5.6046 -1.1742 36 1 4.2057 -9.7659 -2.2576 37 1 5.4289 -9.7701 -0.9599 38 1 3.3571 -11.1961 -0.4986 39 1 3.7329 -9.9827 0.7466 40 1 1.7472 -12.2866 -0.4061 41 1 1.7933 -11.6820 1.2675 42 1 0.6064 -14.1013 1.2276 43 1 -1.0705 -13.9990 1.2357 44 1 1.8664 -7.7008 1.1685 45 1 0.4362 -7.0984 0.2891 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217560794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:40 Heat of formation + Delta-G solvation = -117.104801 kcal Electronic energy + Delta-G solvation = -30284.757533 eV Core-core repulsion = 25917.343792 eV Total energy + Delta-G solvation = -4367.413742 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.31456 -39.92833 -38.58233 -38.07299 -36.64869 -35.23112 -33.99281 -33.82561 -32.00239 -31.14462 -30.70400 -28.79512 -28.30965 -26.44225 -24.27000 -23.64762 -22.40929 -21.20713 -20.66284 -19.15273 -19.08143 -18.05377 -17.78440 -17.73527 -17.28693 -16.67837 -16.30091 -15.96401 -15.81969 -15.59312 -14.99807 -14.81665 -14.58554 -14.35708 -14.12841 -13.96841 -13.77492 -13.55449 -13.21988 -12.98625 -12.91081 -12.53925 -12.42415 -12.12292 -11.84139 -11.77631 -11.45894 -11.38907 -11.15210 -10.89743 -10.69569 -10.51623 -10.34574 -10.15966 -10.03887 -10.02260 -9.68089 -9.43438 -8.90059 -8.37374 -7.90215 -7.79030 -6.35145 -3.75810 2.24150 2.39758 2.44326 3.18346 3.22240 3.30412 3.36653 3.52069 3.92741 3.97947 4.08548 4.24790 4.31254 4.41804 4.48877 4.54680 4.60686 4.74917 4.77055 4.82125 4.96305 5.17463 5.23364 5.28126 5.31545 5.33089 5.50205 5.64906 5.79587 5.89003 5.97309 5.99308 6.27132 6.35313 6.39548 6.44630 6.86088 6.95049 7.02537 7.29067 7.31419 7.61319 7.86482 8.02132 8.12947 8.69066 9.24834 9.61781 10.13926 10.82754 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020349 B = 0.002348 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.642562 B =11920.907853 C =13033.841679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.020 3.980 3 Si 0.930 3.070 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.296 4.296 8 H 0.103 0.897 9 N -0.567 5.567 10 C 0.445 3.555 11 O -0.576 6.576 12 C 0.039 3.961 13 N -0.500 5.500 14 C 0.067 3.933 15 C 0.077 3.923 16 H 0.076 0.924 17 O -0.352 6.352 18 C 0.047 3.953 19 C 0.074 3.926 20 N -0.598 5.598 21 C 0.505 3.495 22 O -0.486 6.486 23 C -0.165 4.165 24 C 0.514 3.486 25 N -0.861 5.861 26 O -0.494 6.494 27 C 0.105 3.895 28 H 0.096 0.904 29 C 0.042 3.958 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.109 0.891 36 H 0.058 0.942 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.399 0.601 43 H 0.403 0.597 44 H 0.077 0.923 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.816 -29.960 -1.449 30.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.181 4.181 3 Si 0.757 3.243 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.426 4.426 8 H 0.121 0.879 9 N -0.204 5.204 10 C 0.230 3.770 11 O -0.459 6.459 12 C -0.092 4.092 13 N -0.224 5.224 14 C -0.061 4.061 15 C 0.017 3.983 16 H 0.094 0.906 17 O -0.270 6.270 18 C -0.031 4.031 19 C -0.049 4.049 20 N -0.334 5.334 21 C 0.290 3.710 22 O -0.357 6.357 23 C -0.208 4.208 24 C 0.296 3.704 25 N -0.427 5.427 26 O -0.365 6.365 27 C -0.001 4.001 28 H 0.114 0.886 29 C -0.087 4.087 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.127 0.873 36 H 0.076 0.924 37 H 0.128 0.872 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.227 0.773 43 H 0.234 0.766 44 H 0.096 0.904 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.822 -28.696 -1.238 29.124 hybrid contribution -0.832 -0.072 -0.475 0.960 sum 3.990 -28.767 -1.713 29.093 Atomic orbital electron populations 1.69620 1.05912 1.28056 1.50850 1.25258 0.95633 0.99682 0.97518 0.85862 0.79234 0.80903 0.78302 1.20490 1.20991 1.19432 1.19689 0.93332 0.82208 1.47373 0.87929 1.41865 1.09187 1.04563 1.64752 1.19726 0.88414 0.84480 0.84366 1.90516 1.13584 1.86984 1.54846 1.22176 0.93849 0.91397 1.01781 1.62839 1.25462 1.01241 1.32854 1.22826 1.02192 0.91028 0.90038 1.23050 0.83201 0.95549 0.96458 0.90632 1.88173 1.36682 1.20121 1.81997 1.22917 0.99583 0.82357 0.98196 1.22068 0.83500 0.97713 1.01599 1.46991 1.06137 1.13340 1.66936 1.20080 0.84848 0.86983 0.79069 1.90884 1.22842 1.72615 1.49366 1.21655 0.98091 0.95920 1.05170 1.20003 0.90978 0.81921 0.77530 1.43853 1.12490 1.15313 1.71019 1.90937 1.36427 1.60868 1.48307 1.21889 0.98948 0.81792 0.97442 0.88636 1.23108 0.98334 0.89202 0.98042 0.91943 0.77502 0.89173 0.93136 0.92104 0.87326 0.92406 0.87183 0.89651 0.90592 0.86058 0.85865 0.77317 0.76579 0.90446 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.16 13.05 55.50 0.72 -24.44 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.49 29.55 -169.99 -5.02 16.47 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.43 9.68 -14.94 -0.14 -8.58 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 9 N -0.57 -14.78 5.29 -10.96 -0.06 -14.83 16 10 C 0.45 10.84 7.57 -10.98 -0.08 10.76 16 11 O -0.58 -15.87 14.67 5.55 0.08 -15.79 16 12 C 0.04 0.75 5.00 -4.97 -0.02 0.73 16 13 N -0.50 -8.98 4.84 -234.19 -1.13 -10.11 16 14 C 0.07 1.10 5.38 -3.01 -0.02 1.09 16 15 C 0.08 0.99 3.60 -26.05 -0.09 0.89 16 16 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 17 O -0.35 -4.44 10.36 -35.23 -0.36 -4.80 16 18 C 0.05 0.35 7.01 37.19 0.26 0.61 16 19 C 0.07 0.48 5.98 -4.53 -0.03 0.45 16 20 N -0.60 -6.13 2.77 -167.56 -0.46 -6.60 16 21 C 0.51 5.69 7.42 -10.99 -0.08 5.61 16 22 O -0.49 -8.02 13.53 -18.96 -0.26 -8.28 16 23 C -0.17 -0.99 4.67 -29.04 -0.14 -1.13 16 24 C 0.51 4.55 8.09 -10.98 -0.09 4.46 16 25 N -0.86 -3.49 8.87 31.22 0.28 -3.21 16 26 O -0.49 -7.53 15.02 -18.96 -0.28 -7.82 16 27 C 0.10 1.35 2.82 -68.38 -0.19 1.16 16 28 H 0.10 1.31 7.56 -51.93 -0.39 0.91 16 29 C 0.04 0.65 6.31 -3.22 -0.02 0.63 16 30 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.39 9.83 7.90 -40.82 -0.32 9.51 16 32 H 0.09 1.61 8.03 -51.93 -0.42 1.19 16 33 H 0.05 0.88 7.87 -51.93 -0.41 0.47 16 34 H 0.06 0.99 7.54 -51.93 -0.39 0.60 16 35 H 0.11 2.10 7.49 -51.93 -0.39 1.71 16 36 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 37 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.22 6.24 -51.93 -0.32 -0.10 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.12 0.29 7.24 -51.92 -0.38 -0.09 16 41 H 0.12 0.39 8.04 -51.93 -0.42 -0.03 16 42 H 0.40 0.12 8.83 -40.82 -0.36 -0.24 16 43 H 0.40 1.53 8.93 -40.82 -0.36 1.17 16 44 H 0.08 1.21 7.99 -51.93 -0.41 0.80 16 45 H 0.06 1.02 7.54 -51.93 -0.39 0.63 16 LS Contribution 367.49 15.07 5.54 5.54 Total: -1.00 -40.13 367.49 -7.88 -48.00 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.17 Total: 8.72 kcal Atomic # 6 Polarization: 17.89 SS G_CDS: -0.74 Total: 17.14 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: -0.65 Total: -59.19 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -0.82 Total: -36.69 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -40.13 -7.88 -48.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217560794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.100 kcal (2) G-P(sol) polarization free energy of solvation -40.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds