Wall clock time and date at job start Sat Apr 11 2020 06:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48499 * 109.47268 * 269.99735 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99994 * 3 2 1 6 6 H 1.48505 * 109.46734 * 149.99787 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.47276 * 111.00247 * 291.56716 * 13 12 10 15 15 C 1.54157 * 106.40564 * 219.39298 * 14 13 12 16 16 H 1.08999 * 111.00399 * 146.28802 * 15 14 13 17 17 O 1.42316 * 109.42968 * 268.29573 * 15 14 13 18 18 C 1.43250 * 113.36132 * 173.09520 * 17 15 14 19 19 C 1.53060 * 107.86123 * 290.58206 * 18 17 15 20 20 N 1.45530 * 110.10245 * 49.17574 * 19 18 17 21 21 C 1.34775 * 117.48874 * 153.58635 * 20 19 18 22 22 O 1.21280 * 119.99720 * 179.97438 * 21 20 19 23 23 C 1.50696 * 120.00193 * 359.97438 * 21 20 19 24 24 C 1.50703 * 109.47285 * 180.02562 * 23 21 20 25 25 N 1.34782 * 119.99808 * 180.02562 * 24 23 21 26 26 O 1.21277 * 119.99595 * 0.02562 * 24 23 21 27 27 C 1.44680 * 125.01890 * 333.56402 * 20 19 18 28 28 H 1.09001 * 108.84645 * 138.59765 * 27 20 19 29 29 C 1.47192 * 110.99573 * 169.99840 * 13 12 10 30 30 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 33 33 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 34 34 H 1.08997 * 110.07191 * 338.63655 * 14 13 12 35 35 H 1.09005 * 110.06628 * 100.15936 * 14 13 12 36 36 H 1.09000 * 109.78269 * 50.17275 * 18 17 15 37 37 H 1.09002 * 109.78327 * 170.93801 * 18 17 15 38 38 H 1.08997 * 109.37043 * 169.36999 * 19 18 17 39 39 H 1.08997 * 109.36642 * 289.11714 * 19 18 17 40 40 H 1.09008 * 109.47465 * 300.00286 * 23 21 20 41 41 H 1.09003 * 109.46997 * 59.99965 * 23 21 20 42 42 H 0.96994 * 120.00476 * 359.97438 * 25 24 23 43 43 H 0.97000 * 119.99161 * 180.02562 * 25 24 23 44 44 H 1.09007 * 109.82287 * 243.16381 * 29 13 12 45 45 H 1.08995 * 109.82726 * 4.03639 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.9258 -6.0516 -1.2803 15 6 3.0564 -7.5489 -1.6231 16 1 3.0139 -7.7082 -2.7005 17 8 4.2801 -8.0500 -1.0970 18 6 4.4164 -9.4698 -1.2300 19 6 3.4096 -10.1288 -0.2841 20 7 2.0929 -9.5353 -0.4628 21 6 1.0218 -10.2948 -0.1589 22 8 -0.0970 -9.8455 -0.2904 23 6 1.2143 -11.7022 0.3441 24 6 -0.1302 -12.3300 0.6073 25 7 -0.2050 -13.5949 1.0667 26 8 -1.1448 -11.6970 0.4057 27 6 1.8454 -8.1925 -0.9411 28 1 1.0057 -8.2153 -1.6357 29 6 1.5128 -7.2598 0.2365 30 1 -0.4850 0.8401 -0.0004 31 1 0.3535 -2.3906 0.0002 32 1 0.6170 -4.9209 0.8886 33 1 0.6176 -4.9205 -0.8913 34 1 2.3639 -5.5370 -2.0597 35 1 3.9143 -5.6046 -1.1742 36 1 4.2057 -9.7659 -2.2576 37 1 5.4289 -9.7701 -0.9599 38 1 3.3571 -11.1961 -0.4986 39 1 3.7329 -9.9827 0.7466 40 1 1.7472 -12.2866 -0.4061 41 1 1.7933 -11.6820 1.2675 42 1 0.6064 -14.1013 1.2276 43 1 -1.0705 -13.9990 1.2357 44 1 1.8664 -7.7008 1.1685 45 1 0.4362 -7.0984 0.2891 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217560794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:39 Heat of formation + Delta-G solvation = -153.564165 kcal Electronic energy + Delta-G solvation = -30286.338530 eV Core-core repulsion = 25917.343792 eV Total energy + Delta-G solvation = -4368.994738 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.19451 -40.82480 -40.08744 -39.14362 -37.95199 -36.09267 -35.90359 -34.58444 -33.37520 -32.92219 -31.39794 -29.79628 -29.44049 -27.92771 -26.11230 -24.39231 -23.25631 -22.48103 -21.43803 -20.99706 -19.90098 -19.86380 -18.74876 -18.44759 -18.03919 -17.63179 -17.45172 -17.07866 -16.85461 -16.57547 -16.52397 -15.99491 -15.80258 -15.56224 -15.51414 -15.07789 -15.02852 -14.53037 -14.40052 -14.18102 -13.96536 -13.84092 -13.59376 -13.42231 -13.11684 -12.97899 -12.84745 -12.77546 -12.52164 -12.41688 -12.22209 -12.11863 -11.65093 -11.49024 -11.29640 -10.82260 -10.55402 -10.51997 -10.33427 -10.01614 -9.75706 -9.24040 -8.46255 -5.95390 1.37924 1.41078 1.54558 1.57085 1.68315 1.75067 2.03582 2.28031 2.65976 2.68184 2.80108 3.17503 3.21128 3.32011 3.47316 3.51798 3.88417 3.90985 4.05432 4.10927 4.18838 4.23021 4.28779 4.31643 4.39444 4.41426 4.45309 4.49725 4.58906 4.62267 4.75810 4.85254 4.96256 5.02146 5.40792 5.48658 5.78942 5.94799 5.98077 6.05028 6.15485 6.26877 6.57650 6.59956 7.12317 7.16614 7.50043 7.55026 8.10598 8.71355 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020349 B = 0.002348 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.642562 B =11920.907853 C =13033.841679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.016 4.016 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.331 4.331 8 H 0.080 0.920 9 N -0.575 5.575 10 C 0.444 3.556 11 O -0.611 6.611 12 C 0.052 3.948 13 N -0.519 5.519 14 C 0.065 3.935 15 C 0.093 3.907 16 H 0.098 0.902 17 O -0.382 6.382 18 C 0.038 3.962 19 C 0.068 3.932 20 N -0.596 5.596 21 C 0.496 3.504 22 O -0.548 6.548 23 C -0.153 4.153 24 C 0.506 3.494 25 N -0.836 5.836 26 O -0.571 6.571 27 C 0.113 3.887 28 H 0.085 0.915 29 C 0.049 3.951 30 H 0.277 0.723 31 H 0.395 0.605 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.081 0.919 40 H 0.171 0.829 41 H 0.162 0.838 42 H 0.421 0.579 43 H 0.406 0.594 44 H 0.073 0.927 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.280 -32.742 -1.475 33.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.216 4.216 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.460 4.460 8 H 0.098 0.902 9 N -0.213 5.213 10 C 0.231 3.769 11 O -0.497 6.497 12 C -0.079 4.079 13 N -0.244 5.244 14 C -0.063 4.063 15 C 0.033 3.967 16 H 0.116 0.884 17 O -0.301 6.301 18 C -0.038 4.038 19 C -0.053 4.053 20 N -0.330 5.330 21 C 0.284 3.716 22 O -0.424 6.424 23 C -0.194 4.194 24 C 0.290 3.710 25 N -0.402 5.402 26 O -0.448 6.448 27 C 0.007 3.993 28 H 0.103 0.897 29 C -0.080 4.080 30 H 0.087 0.913 31 H 0.229 0.771 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.099 0.901 40 H 0.188 0.812 41 H 0.180 0.820 42 H 0.253 0.747 43 H 0.237 0.763 44 H 0.091 0.909 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.345 -31.578 -1.242 32.233 hybrid contribution -1.215 0.676 -0.421 1.453 sum 5.130 -30.902 -1.663 31.369 Atomic orbital electron populations 1.69691 1.06921 1.29283 1.50476 1.26094 0.96576 1.02551 0.96340 0.84889 0.77834 0.76676 0.78689 1.19497 1.19591 1.19700 1.19671 0.92713 0.83848 1.49777 0.90154 1.41935 1.09272 1.04715 1.65345 1.20599 0.88263 0.85665 0.82378 1.90486 1.15418 1.87772 1.55988 1.22014 0.93578 0.89093 1.03258 1.62724 1.25751 1.01954 1.33979 1.22706 1.00083 0.94098 0.89429 1.22787 0.83632 0.92715 0.97534 0.88422 1.88126 1.36036 1.23607 1.82292 1.23324 1.01482 0.79443 0.99575 1.22452 0.80973 1.00164 1.01750 1.47105 1.07787 1.11974 1.66175 1.21041 0.83912 0.88774 0.77878 1.90873 1.25351 1.74192 1.51952 1.21746 0.97201 0.92416 1.08081 1.20580 0.91197 0.82629 0.76628 1.43668 1.13853 1.13932 1.68728 1.90923 1.38988 1.62973 1.51936 1.21571 0.98538 0.83200 0.96037 0.89738 1.23033 0.97397 0.88536 0.99058 0.91332 0.77145 0.87904 0.91230 0.92486 0.90723 0.90916 0.84546 0.84477 0.90087 0.81179 0.82015 0.74687 0.76341 0.90893 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.62 13.05 21.66 0.28 -51.33 16 2 C -0.02 -0.90 5.50 84.92 0.47 -0.43 16 3 Si 1.00 44.22 29.55 68.60 2.03 46.24 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 7 C -0.33 -19.41 9.68 84.04 0.81 -18.60 16 8 H 0.08 4.99 7.16 -2.91 -0.02 4.97 16 9 N -0.58 -31.08 5.29 -306.98 -1.62 -32.70 16 10 C 0.44 22.50 7.57 87.66 0.66 23.16 16 11 O -0.61 -35.27 14.67 -3.07 -0.05 -35.31 16 12 C 0.05 2.04 5.00 85.56 0.43 2.47 16 13 N -0.52 -19.22 4.84 -894.83 -4.33 -23.56 16 14 C 0.06 2.22 5.38 86.62 0.47 2.69 16 15 C 0.09 2.33 3.60 31.04 0.11 2.44 16 16 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 17 O -0.38 -9.07 10.36 -148.98 -1.54 -10.62 16 18 C 0.04 0.42 7.01 72.00 0.50 0.92 16 19 C 0.07 0.57 5.98 86.58 0.52 1.08 16 20 N -0.60 -10.81 2.77 -802.43 -2.22 -13.03 16 21 C 0.50 10.27 7.42 87.66 0.65 10.92 16 22 O -0.55 -18.45 13.53 20.41 0.28 -18.17 16 23 C -0.15 -1.19 4.67 29.10 0.14 -1.05 16 24 C 0.51 7.94 8.09 87.66 0.71 8.65 16 25 N -0.84 -4.30 8.87 -173.53 -1.54 -5.84 16 26 O -0.57 -17.72 15.02 20.42 0.31 -17.42 16 27 C 0.11 2.87 2.82 45.67 0.13 2.99 16 28 H 0.08 2.34 7.56 -2.39 -0.02 2.32 16 29 C 0.05 1.51 6.31 86.54 0.55 2.06 16 30 H 0.28 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.39 20.46 7.90 -92.71 -0.73 19.73 16 32 H 0.10 3.76 8.03 -2.39 -0.02 3.74 16 33 H 0.07 2.47 7.87 -2.39 -0.02 2.45 16 34 H 0.06 1.94 7.54 -2.39 -0.02 1.92 16 35 H 0.07 3.06 7.49 -2.38 -0.02 3.04 16 36 H 0.07 0.61 8.09 -2.39 -0.02 0.59 16 37 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.14 -0.26 6.24 -2.39 -0.01 -0.27 16 39 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.17 -0.35 7.24 -2.38 -0.02 -0.37 16 41 H 0.16 0.06 8.04 -2.39 -0.02 0.04 16 42 H 0.42 -1.62 8.83 -92.71 -0.82 -2.44 16 43 H 0.41 2.26 8.93 -92.71 -0.83 1.43 16 44 H 0.07 2.30 7.99 -2.38 -0.02 2.28 16 45 H 0.05 1.81 7.54 -2.39 -0.02 1.79 16 Total: -1.00 -95.44 367.49 -3.58 -99.01 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: -1.31 Total: 25.42 kcal Atomic # 6 Polarization: 31.15 SS G_CDS: 6.14 Total: 37.30 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -9.43 Total: -126.46 kcal Atomic # 8 Polarization: -80.51 SS G_CDS: -1.01 Total: -81.52 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -95.44 -3.58 -99.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217560794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.549 kcal (2) G-P(sol) polarization free energy of solvation -95.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds