Wall clock time and date at job start Sat Apr 11 2020 06:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86808 * 119.99710 * 2 1 4 4 H 1.48500 * 109.46811 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47034 * 299.99625 * 3 2 1 6 6 H 1.48498 * 109.47008 * 60.00067 * 3 2 1 7 7 C 1.38947 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99975 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99814 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99810 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99949 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99988 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.46855 * 180.02562 * 12 10 9 14 14 C 1.47904 * 110.99728 * 189.99753 * 13 12 10 15 15 C 1.53995 * 107.05925 * 145.84345 * 14 13 12 16 16 H 1.09003 * 110.31010 * 117.78702 * 15 14 13 17 17 N 1.46497 * 110.31014 * 239.86250 * 15 14 13 18 18 C 1.34777 * 119.99525 * 272.20504 * 17 15 14 19 19 O 1.21283 * 120.00463 * 0.02562 * 18 17 15 20 20 C 1.50700 * 119.99675 * 179.72583 * 18 17 15 21 21 H 1.08994 * 110.43808 * 57.73827 * 20 18 17 22 22 C 1.54629 * 110.48588 * 180.27739 * 20 18 17 23 23 C 1.54482 * 101.76290 * 93.88051 * 22 20 18 24 24 N 1.46754 * 105.47608 * 25.41759 * 23 22 20 25 25 C 1.34416 * 111.29988 * 342.98160 * 24 23 22 26 26 O 1.21286 * 124.94403 * 180.45599 * 25 24 23 27 27 C 1.54604 * 105.22569 * 358.82815 * 15 14 13 28 28 H 1.08995 * 110.72737 * 96.34942 * 27 15 14 29 29 O 1.42895 * 110.72275 * 219.63723 * 27 15 14 30 30 C 1.48529 * 111.00268 * 307.39377 * 13 12 10 31 31 H 0.96998 * 120.00056 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00165 * 0.02562 * 9 7 2 33 33 H 1.08996 * 109.47161 * 59.99819 * 12 10 9 34 34 H 1.08996 * 109.46731 * 299.99750 * 12 10 9 35 35 H 1.08997 * 109.92034 * 26.49360 * 14 13 12 36 36 H 1.09005 * 110.08105 * 265.28698 * 14 13 12 37 37 H 0.97000 * 120.00580 * 92.21250 * 17 15 14 38 38 H 1.08996 * 110.97226 * 211.99673 * 22 20 18 39 39 H 1.09001 * 110.97035 * 335.72805 * 22 20 18 40 40 H 1.09000 * 110.24689 * 144.41941 * 23 22 20 41 41 H 1.09004 * 110.24509 * 266.41163 * 23 22 20 42 42 H 0.97000 * 124.35497 * 162.98567 * 24 23 22 43 43 H 0.96700 * 114.00228 * 179.97438 * 29 27 15 44 44 H 1.09002 * 110.66684 * 318.71767 * 30 13 12 45 45 H 1.08999 * 110.66849 * 81.84854 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6179 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0026 11 8 3.2102 -3.5578 0.0031 12 6 1.2438 -4.8629 0.0032 13 7 2.1984 -5.9794 0.0050 14 6 1.5095 -7.2661 -0.2341 15 6 2.4746 -8.1516 -1.0441 16 1 2.7327 -9.0464 -0.4776 17 7 1.8713 -8.5196 -2.3273 18 6 1.0949 -9.6177 -2.4166 19 8 0.8952 -10.3008 -1.4346 20 6 0.4693 -9.9928 -3.7353 21 1 1.2378 -10.1284 -4.4963 22 6 -0.3774 -11.2781 -3.5865 23 6 -1.7845 -10.6991 -3.3192 24 7 -1.7805 -9.3637 -3.9278 25 6 -0.5275 -8.9400 -4.1671 26 8 -0.2381 -7.8689 -4.6571 27 6 3.7309 -7.2799 -1.2720 28 1 4.4931 -7.4986 -0.5242 29 8 4.2457 -7.4702 -2.5914 30 6 3.1852 -5.8377 -1.0960 31 1 -0.4850 0.8400 0.0004 32 1 0.3533 -2.3906 0.0016 33 1 0.6175 -4.9213 -0.8869 34 1 0.6169 -4.9200 0.8930 35 1 0.5948 -7.0977 -0.8024 36 1 1.2733 -7.7464 0.7155 37 1 2.0308 -7.9732 -3.1128 38 1 -0.3644 -11.8626 -4.5064 39 1 -0.0341 -11.8758 -2.7420 40 1 -2.5448 -11.3245 -3.7870 41 1 -1.9641 -10.6244 -2.2467 42 1 -2.5793 -8.8525 -4.1311 43 1 5.0343 -6.9452 -2.7854 44 1 2.6968 -5.4968 -2.0089 45 1 3.9862 -5.1562 -0.8095 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220132220.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:48 Heat of formation + Delta-G solvation = -132.636251 kcal Electronic energy + Delta-G solvation = -30389.806088 eV Core-core repulsion = 26021.718852 eV Total energy + Delta-G solvation = -4368.087236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.29419 -39.89637 -38.72558 -37.79767 -36.61324 -35.75932 -34.34530 -33.79872 -32.00073 -31.33018 -30.24081 -28.43619 -27.75664 -26.38564 -24.27874 -23.02420 -21.88608 -21.40662 -20.55731 -20.22745 -19.26549 -18.17204 -17.92367 -17.77405 -17.36895 -16.25189 -16.01616 -15.81028 -15.70304 -15.10922 -14.87618 -14.75590 -14.58245 -14.20298 -14.02232 -13.92753 -13.81574 -13.47900 -13.32325 -13.13116 -12.92256 -12.69780 -12.18032 -12.09290 -11.90676 -11.76660 -11.59033 -11.55881 -11.32291 -11.07948 -10.74679 -10.39624 -10.34931 -10.25363 -10.07279 -9.93344 -9.51908 -9.49861 -9.26244 -8.44719 -8.05777 -7.94236 -6.44388 -3.85461 1.98070 2.38149 2.87381 3.06048 3.14551 3.25440 3.32261 3.82072 3.85962 3.88516 3.98335 4.12451 4.36083 4.39229 4.55325 4.62845 4.71434 4.73359 5.04669 5.10499 5.14389 5.16240 5.23124 5.32067 5.42954 5.46891 5.59164 5.70045 5.78993 5.88832 5.91118 6.11530 6.20863 6.28737 6.34080 6.52273 6.57501 7.06304 7.16894 7.34124 7.52736 7.53987 7.81662 7.98913 8.02683 8.57713 9.14607 9.50252 10.01123 10.73270 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015419 B = 0.002643 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.489091 B =10589.582769 C =11511.190951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.560 5.560 10 C 0.442 3.558 11 O -0.583 6.583 12 C 0.037 3.963 13 N -0.488 5.488 14 C 0.023 3.977 15 C 0.143 3.857 16 H 0.103 0.897 17 N -0.699 5.699 18 C 0.532 3.468 19 O -0.535 6.535 20 C -0.152 4.152 21 H 0.133 0.867 22 C -0.119 4.119 23 C 0.099 3.901 24 N -0.727 5.727 25 C 0.528 3.472 26 O -0.517 6.517 27 C 0.089 3.911 28 H 0.085 0.915 29 O -0.563 6.563 30 C 0.007 3.993 31 H 0.272 0.728 32 H 0.393 0.607 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.089 0.911 37 H 0.414 0.586 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.415 0.585 43 H 0.386 0.614 44 H 0.047 0.953 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.457 -23.121 -7.600 24.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.196 5.196 10 C 0.228 3.772 11 O -0.468 6.468 12 C -0.095 4.095 13 N -0.213 5.213 14 C -0.106 4.106 15 C 0.038 3.962 16 H 0.121 0.879 17 N -0.350 5.350 18 C 0.316 3.684 19 O -0.413 6.413 20 C -0.176 4.176 21 H 0.151 0.849 22 C -0.157 4.157 23 C -0.025 4.025 24 N -0.384 5.384 25 C 0.312 3.688 26 O -0.391 6.391 27 C 0.028 3.972 28 H 0.102 0.898 29 O -0.368 6.368 30 C -0.121 4.121 31 H 0.081 0.919 32 H 0.226 0.774 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.251 0.749 38 H 0.108 0.892 39 H 0.128 0.872 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.254 0.746 43 H 0.235 0.765 44 H 0.065 0.935 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.902 -23.316 -6.654 24.321 hybrid contribution -0.708 1.773 -1.175 2.242 sum -2.610 -21.543 -7.828 23.069 Atomic orbital electron populations 1.69621 1.05979 1.28144 1.50354 1.25285 0.95638 0.99798 0.97213 0.85791 0.79685 0.81078 0.77733 1.19198 1.20739 1.20705 1.19746 0.93381 0.82124 1.47625 0.87793 1.41856 1.09251 1.04590 1.63874 1.19650 0.88309 0.84615 0.84618 1.90415 1.13685 1.86728 1.55969 1.22120 0.94497 0.91095 1.01782 1.64600 1.13340 1.00224 1.43186 1.23432 0.96113 0.91043 0.99996 1.21904 0.91499 0.98128 0.84683 0.87906 1.45823 1.49065 1.27041 1.13085 1.19709 0.78854 0.80789 0.89075 1.90696 1.61074 1.52019 1.37467 1.22156 0.99556 0.97325 0.98592 0.84908 1.22606 0.92860 0.95386 1.04817 1.22153 0.98355 0.82848 0.99193 1.46159 1.08333 1.20387 1.63475 1.20305 0.84185 0.86698 0.77576 1.90836 1.81687 1.22941 1.43684 1.23158 0.94470 0.94681 0.84844 0.89754 1.86332 1.49195 1.70025 1.31258 1.24244 0.98460 0.96366 0.92984 0.91854 0.77421 0.93246 0.88991 0.93123 0.89233 0.74938 0.89206 0.87165 0.89780 0.90315 0.74622 0.76543 0.93512 0.85822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.30 -8.32 9.68 -14.94 -0.14 -8.46 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 10 C 0.44 10.43 7.49 -10.98 -0.08 10.35 16 11 O -0.58 -15.16 13.09 5.55 0.07 -15.08 16 12 C 0.04 0.68 5.52 -4.98 -0.03 0.66 16 13 N -0.49 -8.29 5.26 -231.72 -1.22 -9.51 16 14 C 0.02 0.34 6.50 -2.75 -0.02 0.32 16 15 C 0.14 1.86 3.27 -66.57 -0.22 1.65 16 16 H 0.10 1.32 7.60 -51.93 -0.39 0.92 16 17 N -0.70 -8.69 4.61 -52.49 -0.24 -8.94 16 18 C 0.53 6.29 7.16 -10.98 -0.08 6.21 16 19 O -0.54 -7.35 15.15 5.55 0.08 -7.27 16 20 C -0.15 -1.36 3.33 -91.78 -0.31 -1.66 16 21 H 0.13 0.98 8.14 -51.93 -0.42 0.55 16 22 C -0.12 -0.72 6.50 -25.10 -0.16 -0.89 16 23 C 0.10 0.57 7.78 -3.13 -0.02 0.54 16 24 N -0.73 -5.83 6.24 -59.21 -0.37 -6.20 16 25 C 0.53 5.83 7.72 -10.86 -0.08 5.75 16 26 O -0.52 -7.80 18.03 5.55 0.10 -7.70 16 27 C 0.09 1.13 4.36 -24.72 -0.11 1.02 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 O -0.56 -6.37 12.08 -35.23 -0.43 -6.80 16 30 C 0.01 0.12 5.04 -1.76 -0.01 0.11 16 31 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.39 9.68 7.90 -40.82 -0.32 9.35 16 33 H 0.05 0.89 7.81 -51.93 -0.41 0.48 16 34 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 35 H 0.05 0.76 7.35 -51.93 -0.38 0.38 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.41 5.37 7.81 -40.82 -0.32 5.05 16 38 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.11 0.75 6.96 -51.93 -0.36 0.39 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.41 2.79 8.96 -40.82 -0.37 2.42 16 43 H 0.39 3.04 9.12 45.56 0.42 3.46 16 44 H 0.05 0.83 8.02 -51.93 -0.42 0.41 16 45 H 0.12 2.36 5.97 -51.93 -0.31 2.05 16 LS Contribution 373.47 15.07 5.63 5.63 Total: -1.00 -34.78 373.47 -7.42 -42.20 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -5.33 Total: 19.77 kcal Atomic # 6 Polarization: 17.46 SS G_CDS: -1.36 Total: 16.10 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: -1.16 Total: -62.87 kcal Atomic # 8 Polarization: -36.68 SS G_CDS: -0.17 Total: -36.84 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.78 -7.42 -42.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220132220.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.441 kcal (2) G-P(sol) polarization free energy of solvation -34.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds