Wall clock time and date at job start Sat Apr 11 2020 06:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86808 * 119.99710 * 2 1 4 4 H 1.48500 * 109.46811 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47034 * 299.99625 * 3 2 1 6 6 H 1.48498 * 109.47008 * 60.00067 * 3 2 1 7 7 C 1.38947 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99975 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99814 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99810 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99949 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99988 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.46855 * 180.02562 * 12 10 9 14 14 C 1.47904 * 110.99728 * 189.99753 * 13 12 10 15 15 C 1.53995 * 107.05925 * 145.84345 * 14 13 12 16 16 H 1.09003 * 110.31010 * 117.78702 * 15 14 13 17 17 N 1.46497 * 110.31014 * 239.86250 * 15 14 13 18 18 C 1.34777 * 119.99525 * 272.20504 * 17 15 14 19 19 O 1.21283 * 120.00463 * 0.02562 * 18 17 15 20 20 C 1.50700 * 119.99675 * 179.72583 * 18 17 15 21 21 H 1.08994 * 110.43808 * 57.73827 * 20 18 17 22 22 C 1.54629 * 110.48588 * 180.27739 * 20 18 17 23 23 C 1.54482 * 101.76290 * 93.88051 * 22 20 18 24 24 N 1.46754 * 105.47608 * 25.41759 * 23 22 20 25 25 C 1.34416 * 111.29988 * 342.98160 * 24 23 22 26 26 O 1.21286 * 124.94403 * 180.45599 * 25 24 23 27 27 C 1.54604 * 105.22569 * 358.82815 * 15 14 13 28 28 H 1.08995 * 110.72737 * 96.34942 * 27 15 14 29 29 O 1.42895 * 110.72275 * 219.63723 * 27 15 14 30 30 C 1.48529 * 111.00268 * 307.39377 * 13 12 10 31 31 H 0.96998 * 120.00056 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00165 * 0.02562 * 9 7 2 33 33 H 1.08996 * 109.47161 * 59.99819 * 12 10 9 34 34 H 1.08996 * 109.46731 * 299.99750 * 12 10 9 35 35 H 1.08997 * 109.92034 * 26.49360 * 14 13 12 36 36 H 1.09005 * 110.08105 * 265.28698 * 14 13 12 37 37 H 0.97000 * 120.00580 * 92.21250 * 17 15 14 38 38 H 1.08996 * 110.97226 * 211.99673 * 22 20 18 39 39 H 1.09001 * 110.97035 * 335.72805 * 22 20 18 40 40 H 1.09000 * 110.24689 * 144.41941 * 23 22 20 41 41 H 1.09004 * 110.24509 * 266.41163 * 23 22 20 42 42 H 0.97000 * 124.35497 * 162.98567 * 24 23 22 43 43 H 0.96700 * 114.00228 * 179.97438 * 29 27 15 44 44 H 1.09002 * 110.66684 * 318.71767 * 30 13 12 45 45 H 1.08999 * 110.66849 * 81.84854 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6179 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0026 11 8 3.2102 -3.5578 0.0031 12 6 1.2438 -4.8629 0.0032 13 7 2.1984 -5.9794 0.0050 14 6 1.5095 -7.2661 -0.2341 15 6 2.4746 -8.1516 -1.0441 16 1 2.7327 -9.0464 -0.4776 17 7 1.8713 -8.5196 -2.3273 18 6 1.0949 -9.6177 -2.4166 19 8 0.8952 -10.3008 -1.4346 20 6 0.4693 -9.9928 -3.7353 21 1 1.2378 -10.1284 -4.4963 22 6 -0.3774 -11.2781 -3.5865 23 6 -1.7845 -10.6991 -3.3192 24 7 -1.7805 -9.3637 -3.9278 25 6 -0.5275 -8.9400 -4.1671 26 8 -0.2381 -7.8689 -4.6571 27 6 3.7309 -7.2799 -1.2720 28 1 4.4931 -7.4986 -0.5242 29 8 4.2457 -7.4702 -2.5914 30 6 3.1852 -5.8377 -1.0960 31 1 -0.4850 0.8400 0.0004 32 1 0.3533 -2.3906 0.0016 33 1 0.6175 -4.9213 -0.8869 34 1 0.6169 -4.9200 0.8930 35 1 0.5948 -7.0977 -0.8024 36 1 1.2733 -7.7464 0.7155 37 1 2.0308 -7.9732 -3.1128 38 1 -0.3644 -11.8626 -4.5064 39 1 -0.0341 -11.8758 -2.7420 40 1 -2.5448 -11.3245 -3.7870 41 1 -1.9641 -10.6244 -2.2467 42 1 -2.5793 -8.8525 -4.1311 43 1 5.0343 -6.9452 -2.7854 44 1 2.6968 -5.4968 -2.0089 45 1 3.9862 -5.1562 -0.8095 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220132220.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:47 Heat of formation + Delta-G solvation = -166.149773 kcal Electronic energy + Delta-G solvation = -30391.259343 eV Core-core repulsion = 26021.718852 eV Total energy + Delta-G solvation = -4369.540491 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.12601 -41.08826 -40.07240 -39.19364 -37.41839 -36.92972 -35.99178 -35.21276 -33.36220 -32.73593 -31.45116 -29.40784 -28.76284 -27.91054 -26.04348 -23.82185 -22.73874 -22.56931 -21.59975 -21.11926 -21.09488 -19.91252 -19.01791 -18.56268 -18.37643 -17.84544 -17.01923 -16.92158 -16.71970 -16.60587 -16.32032 -16.02249 -15.86669 -15.60622 -15.17007 -15.02142 -14.75338 -14.70683 -14.47939 -14.18189 -14.03312 -13.79251 -13.66531 -13.52023 -13.30094 -13.00658 -12.80410 -12.57667 -12.45710 -12.43085 -12.30667 -12.13502 -11.93011 -11.51970 -11.29165 -11.04125 -10.96203 -10.30544 -10.23878 -10.16173 -10.04795 -9.46572 -8.49778 -5.98869 1.11557 1.34519 1.40210 1.49893 1.54580 1.97417 2.00097 2.25812 2.36593 2.68361 3.05976 3.16434 3.22111 3.27227 3.39905 3.51423 3.65815 3.71379 4.02137 4.05568 4.15372 4.19799 4.22377 4.31101 4.40933 4.44292 4.50096 4.61689 4.74900 4.81337 4.82261 5.01619 5.08938 5.12341 5.30629 5.38619 5.68551 5.69608 5.78874 5.88367 5.99957 6.37348 6.55087 6.73254 7.02691 7.08397 7.08711 7.49740 8.04179 8.68010 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015419 B = 0.002643 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.489091 B =10589.582769 C =11511.190951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.995 3.005 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.331 4.331 8 H 0.083 0.917 9 N -0.571 5.571 10 C 0.441 3.559 11 O -0.609 6.609 12 C 0.048 3.952 13 N -0.497 5.497 14 C 0.029 3.971 15 C 0.146 3.854 16 H 0.111 0.889 17 N -0.700 5.700 18 C 0.530 3.470 19 O -0.554 6.554 20 C -0.149 4.149 21 H 0.150 0.850 22 C -0.111 4.111 23 C 0.095 3.905 24 N -0.718 5.718 25 C 0.520 3.480 26 O -0.568 6.568 27 C 0.106 3.894 28 H 0.100 0.900 29 O -0.564 6.564 30 C 0.011 3.989 31 H 0.278 0.722 32 H 0.395 0.605 33 H 0.058 0.942 34 H 0.111 0.889 35 H 0.043 0.957 36 H 0.102 0.898 37 H 0.411 0.589 38 H 0.120 0.880 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.072 0.928 42 H 0.420 0.580 43 H 0.402 0.598 44 H 0.027 0.973 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.973 -24.889 -7.993 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.460 4.460 8 H 0.101 0.899 9 N -0.208 5.208 10 C 0.228 3.772 11 O -0.496 6.496 12 C -0.084 4.084 13 N -0.223 5.223 14 C -0.100 4.100 15 C 0.040 3.960 16 H 0.129 0.871 17 N -0.351 5.351 18 C 0.315 3.685 19 O -0.433 6.433 20 C -0.173 4.173 21 H 0.167 0.833 22 C -0.149 4.149 23 C -0.028 4.028 24 N -0.373 5.373 25 C 0.305 3.695 26 O -0.447 6.447 27 C 0.045 3.955 28 H 0.117 0.883 29 O -0.371 6.371 30 C -0.117 4.117 31 H 0.087 0.913 32 H 0.228 0.772 33 H 0.076 0.924 34 H 0.129 0.871 35 H 0.062 0.938 36 H 0.120 0.880 37 H 0.248 0.752 38 H 0.138 0.862 39 H 0.124 0.876 40 H 0.137 0.863 41 H 0.090 0.910 42 H 0.260 0.740 43 H 0.253 0.747 44 H 0.046 0.954 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.452 -25.132 -7.043 26.215 hybrid contribution -0.565 2.245 -1.052 2.543 sum -3.017 -22.887 -8.095 24.463 Atomic orbital electron populations 1.69687 1.06970 1.29309 1.50277 1.26094 0.96543 1.02581 0.96195 0.84840 0.78104 0.76917 0.78294 1.19533 1.19695 1.19572 1.19720 0.92771 0.83739 1.49811 0.89935 1.41930 1.09296 1.04773 1.64817 1.20508 0.88296 0.85722 0.82630 1.90411 1.15153 1.87471 1.56516 1.21998 0.94318 0.89019 1.03034 1.64585 1.13398 1.00688 1.43603 1.23450 0.95915 0.89820 1.00836 1.21845 0.91122 0.98025 0.84998 0.87081 1.45877 1.49295 1.27311 1.12655 1.20164 0.78297 0.80125 0.89899 1.90685 1.61678 1.52503 1.38421 1.22215 0.99843 0.97983 0.97250 0.83266 1.22692 0.91967 0.94063 1.06174 1.22379 0.99368 0.81958 0.99073 1.46264 1.07729 1.21203 1.62071 1.20669 0.85381 0.86349 0.77111 1.90806 1.82601 1.25028 1.46218 1.22951 0.94782 0.91786 0.85939 0.88264 1.86313 1.50162 1.70215 1.30428 1.24073 0.97422 0.98422 0.91800 0.91277 0.77180 0.92441 0.87086 0.93819 0.88027 0.75239 0.86218 0.87565 0.86292 0.90958 0.74024 0.74732 0.95423 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.52 13.05 21.66 0.28 -50.23 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 3 Si 0.99 43.21 29.55 68.60 2.03 45.24 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.33 -18.90 9.68 84.04 0.81 -18.09 16 8 H 0.08 4.98 7.16 -2.91 -0.02 4.96 16 9 N -0.57 -29.95 5.29 -306.98 -1.62 -31.57 16 10 C 0.44 21.36 7.49 87.66 0.66 22.01 16 11 O -0.61 -32.78 13.09 -3.06 -0.04 -32.82 16 12 C 0.05 1.79 5.52 85.56 0.47 2.26 16 13 N -0.50 -16.82 5.26 -887.03 -4.67 -21.48 16 14 C 0.03 0.79 6.50 86.45 0.56 1.36 16 15 C 0.15 3.62 3.27 45.87 0.15 3.77 16 16 H 0.11 2.64 7.60 -2.39 -0.02 2.62 16 17 N -0.70 -16.81 4.61 -438.36 -2.02 -18.83 16 18 C 0.53 11.83 7.16 87.66 0.63 12.45 16 19 O -0.55 -14.36 15.15 -3.04 -0.05 -14.41 16 20 C -0.15 -2.41 3.33 -11.55 -0.04 -2.44 16 21 H 0.15 1.90 8.14 -2.39 -0.02 1.88 16 22 C -0.11 -1.03 6.50 31.65 0.21 -0.83 16 23 C 0.10 0.84 7.78 86.83 0.68 1.51 16 24 N -0.72 -10.35 6.24 -459.82 -2.87 -13.22 16 25 C 0.52 11.03 7.72 87.90 0.68 11.70 16 26 O -0.57 -17.32 18.03 -3.05 -0.05 -17.37 16 27 C 0.11 2.61 4.36 31.89 0.14 2.75 16 28 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 29 O -0.56 -12.15 12.08 -148.98 -1.80 -13.95 16 30 C 0.01 0.37 5.04 86.74 0.44 0.80 16 31 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 32 H 0.39 19.94 7.90 -92.71 -0.73 19.21 16 33 H 0.06 2.07 7.81 -2.39 -0.02 2.05 16 34 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 35 H 0.04 1.28 7.35 -2.39 -0.02 1.26 16 36 H 0.10 2.58 8.14 -2.38 -0.02 2.56 16 37 H 0.41 10.51 7.81 -92.71 -0.72 9.79 16 38 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.11 1.16 6.96 -2.39 -0.02 1.15 16 40 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 41 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.42 5.10 8.96 -92.71 -0.83 4.27 16 43 H 0.40 5.91 9.12 -74.06 -0.68 5.24 16 44 H 0.03 1.01 8.02 -2.39 -0.02 0.99 16 45 H 0.09 3.74 5.97 -2.39 -0.01 3.72 16 Total: -1.00 -76.67 373.47 -6.84 -83.50 By element: Atomic # 1 Polarization: 50.07 SS G_CDS: -1.87 Total: 48.19 kcal Atomic # 6 Polarization: 31.10 SS G_CDS: 5.85 Total: 36.95 kcal Atomic # 7 Polarization: -124.45 SS G_CDS: -10.90 Total: -135.34 kcal Atomic # 8 Polarization: -76.60 SS G_CDS: -1.94 Total: -78.54 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -76.67 -6.84 -83.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220132220.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.645 kcal (2) G-P(sol) polarization free energy of solvation -76.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds