Wall clock time and date at job start Sat Apr 11 2020 06:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48505 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47403 * 299.99819 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99615 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.48560 * 111.00474 * 169.99790 * 13 12 10 15 15 C 1.54379 * 104.59740 * 159.03563 * 14 13 12 16 16 H 1.08998 * 110.32169 * 95.04643 * 15 14 13 17 17 N 1.46503 * 110.32329 * 217.15040 * 15 14 13 18 18 C 1.34776 * 119.99743 * 273.54969 * 17 15 14 19 19 O 1.21285 * 120.00179 * 359.97438 * 18 17 15 20 20 C 1.50699 * 119.99708 * 180.02562 * 18 17 15 21 21 H 1.09003 * 110.43598 * 298.90996 * 20 18 17 22 22 C 1.54628 * 110.48729 * 176.22503 * 20 18 17 23 23 C 1.54480 * 101.76447 * 266.11860 * 22 20 18 24 24 N 1.46763 * 105.47569 * 334.58165 * 23 22 20 25 25 C 1.34418 * 111.29863 * 17.01752 * 24 23 22 26 26 O 1.21279 * 124.94055 * 179.62759 * 25 24 23 27 27 C 1.54261 * 105.06252 * 336.14904 * 15 14 13 28 28 H 1.09001 * 110.32400 * 118.89318 * 27 15 14 29 29 O 1.42894 * 110.32396 * 241.00098 * 27 15 14 30 30 C 1.48563 * 110.99878 * 285.41634 * 13 12 10 31 31 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 34 34 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 35 35 H 1.08996 * 110.41135 * 277.82078 * 14 13 12 36 36 H 1.09005 * 110.40955 * 40.25927 * 14 13 12 37 37 H 0.97001 * 119.99775 * 93.54695 * 17 15 14 38 38 H 1.09006 * 110.96850 * 24.23685 * 22 20 18 39 39 H 1.09000 * 110.97028 * 147.99889 * 22 20 18 40 40 H 1.09007 * 110.24432 * 215.58317 * 23 22 20 41 41 H 1.09000 * 110.32120 * 93.62728 * 23 22 20 42 42 H 0.96994 * 124.34804 * 196.99456 * 24 23 22 43 43 H 0.96702 * 114.00083 * 179.97438 * 29 27 15 44 44 H 1.09000 * 110.40996 * 319.73962 * 30 13 12 45 45 H 1.09002 * 110.41366 * 82.17706 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 1.5061 -7.2706 0.2654 15 6 2.4749 -8.3419 -0.2795 16 1 3.0987 -8.7323 0.5245 17 7 1.7261 -9.4290 -0.9151 18 6 1.2710 -10.4577 -0.1727 19 8 1.4819 -10.4837 1.0214 20 6 0.5013 -11.5762 -0.8265 21 1 -0.4102 -11.1933 -1.2856 22 6 0.1691 -12.6795 0.2046 23 6 1.3497 -13.6569 0.0115 24 7 1.8157 -13.4412 -1.3633 25 6 1.3588 -12.2774 -1.8569 26 8 1.5985 -11.8518 -2.9670 27 6 3.3422 -7.6054 -1.3211 28 1 4.3918 -7.6343 -1.0283 29 8 3.1719 -8.1921 -2.6129 30 6 2.8245 -6.1510 -1.3179 31 1 -0.4850 0.8400 -0.0004 32 1 0.3533 -2.3906 0.0005 33 1 0.6167 -4.9162 0.9030 34 1 0.6174 -4.9252 -0.8769 35 1 1.3409 -7.4151 1.3331 36 1 0.5597 -7.3040 -0.2745 37 1 1.5578 -9.4083 -1.8702 38 1 0.1580 -12.2764 1.2174 39 1 -0.7793 -13.1618 -0.0320 40 1 1.0124 -14.6856 0.1385 41 1 2.1471 -13.4319 0.7198 42 1 2.3811 -14.0590 -1.8528 43 1 3.6934 -7.7693 -3.3088 44 1 2.0845 -6.0091 -2.1055 45 1 3.6520 -5.4526 -1.4424 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220132221.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:52 Heat of formation + Delta-G solvation = -134.521009 kcal Electronic energy + Delta-G solvation = -29845.265447 eV Core-core repulsion = 25477.096482 eV Total energy + Delta-G solvation = -4368.168965 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.33030 -39.90198 -38.71275 -37.84225 -36.67336 -35.79627 -34.38984 -33.81254 -32.05257 -31.27083 -30.28407 -28.53559 -27.77491 -26.40680 -24.30345 -23.02850 -21.94337 -21.49348 -20.61515 -20.30179 -19.19394 -18.21837 -17.92366 -17.82198 -17.41556 -16.19322 -16.05887 -16.01230 -15.62893 -15.18011 -14.92633 -14.75175 -14.52407 -14.28669 -14.05988 -13.94791 -13.86071 -13.57317 -13.39577 -13.10365 -12.92861 -12.85944 -12.13292 -12.10480 -11.98664 -11.76146 -11.55417 -11.46883 -11.31274 -11.10161 -10.88712 -10.44127 -10.34558 -10.23049 -10.11423 -10.06811 -9.56461 -9.50842 -9.23478 -8.58253 -8.07562 -7.95702 -6.41794 -3.82585 1.94172 2.33976 2.80088 2.98702 3.16159 3.26752 3.33866 3.80091 3.85376 3.90286 3.94932 4.11777 4.29486 4.36640 4.53019 4.59330 4.59396 4.70871 4.99659 5.05702 5.09861 5.14607 5.23361 5.26057 5.40164 5.42442 5.56760 5.63716 5.74049 5.80569 5.89733 5.95854 6.17029 6.22440 6.26433 6.28099 6.50574 6.94807 7.08162 7.33629 7.46548 7.55294 7.75526 7.98303 8.06091 8.61551 9.18140 9.54328 10.06003 10.76090 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029402 B = 0.002052 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.095707 B =13644.681000 C =14010.087891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.297 4.297 8 H 0.104 0.896 9 N -0.565 5.565 10 C 0.446 3.554 11 O -0.577 6.577 12 C 0.035 3.965 13 N -0.477 5.477 14 C 0.020 3.980 15 C 0.151 3.849 16 H 0.105 0.895 17 N -0.700 5.700 18 C 0.530 3.470 19 O -0.532 6.532 20 C -0.151 4.151 21 H 0.134 0.866 22 C -0.120 4.120 23 C 0.099 3.901 24 N -0.728 5.728 25 C 0.529 3.471 26 O -0.516 6.516 27 C 0.093 3.907 28 H 0.079 0.921 29 O -0.563 6.563 30 C 0.006 3.994 31 H 0.271 0.729 32 H 0.392 0.608 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.049 0.951 37 H 0.417 0.583 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.413 0.587 43 H 0.387 0.613 44 H 0.051 0.949 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.508 -27.120 -2.452 27.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.181 4.181 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.231 3.769 11 O -0.461 6.461 12 C -0.096 4.096 13 N -0.202 5.202 14 C -0.109 4.109 15 C 0.045 3.955 16 H 0.123 0.877 17 N -0.353 5.353 18 C 0.314 3.686 19 O -0.409 6.409 20 C -0.176 4.176 21 H 0.151 0.849 22 C -0.158 4.158 23 C -0.026 4.026 24 N -0.384 5.384 25 C 0.313 3.687 26 O -0.391 6.391 27 C 0.033 3.967 28 H 0.097 0.903 29 O -0.369 6.369 30 C -0.122 4.122 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.255 0.745 38 H 0.130 0.870 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.252 0.748 43 H 0.235 0.765 44 H 0.070 0.930 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.603 -26.906 -1.396 26.949 hybrid contribution -0.477 0.915 -1.522 1.838 sum -1.080 -25.991 -2.917 26.177 Atomic orbital electron populations 1.69622 1.05932 1.28036 1.50761 1.25268 0.95648 0.99734 0.97409 0.85798 0.79694 0.81145 0.77689 1.19228 1.20799 1.20751 1.19741 0.93364 0.82163 1.47411 0.87866 1.41870 1.09188 1.04581 1.64602 1.19660 0.88377 0.84413 0.84455 1.90506 1.13622 1.86976 1.55003 1.22075 0.94050 0.91597 1.01910 1.65094 1.27134 1.00947 1.26989 1.23608 0.95810 0.89231 1.02246 1.21781 0.92539 0.86329 0.94807 0.87672 1.45807 1.55161 1.21254 1.13114 1.19735 0.79436 0.82434 0.87038 1.90715 1.57407 1.78320 1.14486 1.22162 1.00928 0.96411 0.98109 0.84867 1.22620 0.98258 0.93821 1.01085 1.22158 0.97278 1.00385 0.82751 1.46155 1.53089 1.22688 1.16510 1.20307 0.79924 0.81536 0.86896 1.90818 1.59655 1.68413 1.20195 1.22832 0.99034 0.91511 0.83308 0.90316 1.86300 1.71842 1.60665 1.18122 1.23919 1.00998 0.96409 0.90920 0.91937 0.77512 0.89068 0.92998 0.89004 0.93258 0.74468 0.87001 0.89146 0.89779 0.90394 0.74761 0.76459 0.93045 0.87933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.57 -14.33 5.29 -10.96 -0.06 -14.39 16 10 C 0.45 10.50 7.63 -10.99 -0.08 10.42 16 11 O -0.58 -15.48 14.80 5.55 0.08 -15.40 16 12 C 0.04 0.64 5.32 -4.98 -0.03 0.61 16 13 N -0.48 -7.93 4.98 -231.41 -1.15 -9.09 16 14 C 0.02 0.28 6.17 -2.18 -0.01 0.27 16 15 C 0.15 1.93 3.36 -66.55 -0.22 1.70 16 16 H 0.11 1.42 7.64 -51.93 -0.40 1.02 16 17 N -0.70 -8.18 4.83 -52.46 -0.25 -8.43 16 18 C 0.53 5.95 7.18 -10.99 -0.08 5.87 16 19 O -0.53 -7.19 15.15 5.55 0.08 -7.11 16 20 C -0.15 -1.24 3.33 -91.78 -0.31 -1.55 16 21 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 22 C -0.12 -0.67 6.53 -25.10 -0.16 -0.83 16 23 C 0.10 0.48 7.78 -3.12 -0.02 0.46 16 24 N -0.73 -4.88 6.24 -59.20 -0.37 -5.25 16 25 C 0.53 5.15 7.65 -10.86 -0.08 5.06 16 26 O -0.52 -6.88 17.85 5.56 0.10 -6.78 16 27 C 0.09 1.15 4.42 -25.35 -0.11 1.03 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 29 O -0.56 -6.16 11.51 -35.23 -0.41 -6.56 16 30 C 0.01 0.09 5.67 -2.18 -0.01 0.08 16 31 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 32 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 33 H 0.09 1.50 8.08 -51.93 -0.42 1.08 16 34 H 0.05 0.85 7.76 -51.93 -0.40 0.45 16 35 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.05 0.65 7.91 -51.93 -0.41 0.24 16 37 H 0.42 4.95 6.97 -40.82 -0.28 4.67 16 38 H 0.11 0.73 6.92 -51.93 -0.36 0.37 16 39 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.08 0.20 8.14 -51.92 -0.42 -0.23 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.41 2.13 8.96 -40.82 -0.37 1.76 16 43 H 0.39 2.85 9.12 45.56 0.42 3.26 16 44 H 0.05 0.76 7.69 -51.93 -0.40 0.36 16 45 H 0.10 1.77 7.24 -51.93 -0.38 1.40 16 LS Contribution 375.29 15.07 5.66 5.66 Total: -1.00 -35.54 375.29 -7.35 -42.89 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -5.37 Total: 17.10 kcal Atomic # 6 Polarization: 16.54 SS G_CDS: -1.37 Total: 15.17 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: -1.11 Total: -61.01 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -0.14 Total: -35.85 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.54 -7.35 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220132221.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.631 kcal (2) G-P(sol) polarization free energy of solvation -35.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds