Wall clock time and date at job start Sat Apr 11 2020 06:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 119.99581 * 2 1 4 4 H 1.48506 * 109.47275 * 269.99821 * 3 2 1 5 5 H 1.48498 * 109.47199 * 30.00106 * 3 2 1 6 6 H 1.48507 * 109.46779 * 150.00013 * 3 2 1 7 7 C 1.38943 * 120.00300 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00335 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00153 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00144 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00052 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99715 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46883 * 180.02562 * 12 10 9 14 14 C 1.47903 * 110.99954 * 190.00170 * 13 12 10 15 15 C 1.53993 * 107.05634 * 145.84175 * 14 13 12 16 16 H 1.09004 * 110.30556 * 117.79344 * 15 14 13 17 17 N 1.46497 * 110.31151 * 239.85683 * 15 14 13 18 18 C 1.34772 * 120.00348 * 273.55138 * 17 15 14 19 19 O 1.21287 * 119.99765 * 4.92876 * 18 17 15 20 20 C 1.50700 * 120.00205 * 184.65175 * 18 17 15 21 21 C 1.50697 * 115.55083 * 64.80696 * 20 18 17 22 22 N 1.34776 * 120.00398 * 65.54668 * 21 20 18 23 23 O 1.21283 * 119.99784 * 245.55446 * 21 20 18 24 24 C 1.53004 * 117.50120 * 279.13402 * 20 18 17 25 25 C 1.53004 * 117.49842 * 210.47576 * 20 18 17 26 26 C 1.54594 * 105.14134 * 358.77436 * 15 14 13 27 27 H 1.09003 * 110.72036 * 96.40048 * 26 15 14 28 28 O 1.42892 * 110.72664 * 219.68085 * 26 15 14 29 29 C 1.48533 * 110.99731 * 307.39748 * 13 12 10 30 30 H 0.96997 * 119.99819 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99871 * 0.02562 * 9 7 2 32 32 H 1.09003 * 109.46873 * 60.00102 * 12 10 9 33 33 H 1.08998 * 109.47327 * 300.00125 * 12 10 9 34 34 H 1.09002 * 109.91833 * 26.49171 * 14 13 12 35 35 H 1.09002 * 109.91486 * 265.19601 * 14 13 12 36 36 H 0.97004 * 119.99775 * 93.54237 * 17 15 14 37 37 H 0.97003 * 119.99830 * 355.02923 * 22 21 20 38 38 H 0.96996 * 120.00159 * 175.03742 * 22 21 20 39 39 H 1.09004 * 117.49298 * 359.97438 * 24 20 18 40 40 H 1.08995 * 117.50020 * 145.01719 * 24 20 18 41 41 H 1.09004 * 117.49613 * 214.97998 * 25 20 18 42 42 H 1.08994 * 117.49967 * 359.97438 * 25 20 18 43 43 H 0.96705 * 114.00464 * 180.02562 * 28 26 15 44 44 H 1.08998 * 110.67262 * 318.71517 * 29 13 12 45 45 H 1.08999 * 110.67085 * 81.67980 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0466 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0890 -1.2033 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9975 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2439 -4.8629 0.0000 13 7 2.1986 -5.9795 0.0005 14 6 1.5095 -7.2661 -0.2387 15 6 2.4741 -8.1511 -1.0498 16 1 2.7326 -9.0462 -0.4839 17 7 1.8699 -8.5186 -2.3327 18 6 1.0716 -9.6013 -2.4162 19 8 0.7812 -10.2192 -1.4138 20 6 0.5348 -10.0403 -3.7542 21 6 1.5677 -10.5059 -4.7479 22 7 2.2818 -11.6227 -4.5044 23 8 1.7563 -9.8756 -5.7667 24 6 -0.6894 -9.3030 -4.3007 25 6 -0.8288 -10.7339 -3.7751 26 6 3.7286 -7.2770 -1.2782 27 1 4.4920 -7.4955 -0.5315 28 8 4.2422 -7.4648 -2.5984 29 6 3.1846 -5.8372 -1.1012 30 1 -0.4850 0.8400 -0.0004 31 1 0.3535 -2.3907 -0.0005 32 1 0.6170 -4.9208 -0.8897 33 1 0.6176 -4.9205 0.8902 34 1 0.5944 -7.0973 -0.8063 35 1 1.2768 -7.7451 0.7124 36 1 2.0444 -7.9826 -3.1222 37 1 2.1832 -12.0866 -3.6582 38 1 2.8945 -11.9624 -5.1752 39 1 -1.1067 -8.5007 -3.6923 40 1 -0.7479 -9.1550 -5.3790 41 1 -0.9789 -11.5268 -4.5080 42 1 -1.3374 -10.8731 -2.8212 43 1 5.0302 -6.9389 -2.7924 44 1 2.6956 -5.4958 -2.0135 45 1 3.9842 -5.1535 -0.8160 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220246201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:55 Heat of formation + Delta-G solvation = -111.383436 kcal Electronic energy + Delta-G solvation = -30159.161926 eV Core-core repulsion = 25791.996281 eV Total energy + Delta-G solvation = -4367.165645 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.03890 -39.85730 -38.82957 -37.87482 -36.25387 -35.79558 -34.39952 -33.96872 -33.82919 -31.37622 -30.34833 -28.15066 -26.74857 -25.59483 -24.24394 -22.90520 -22.51263 -21.44658 -20.55640 -20.00613 -19.30500 -18.54821 -17.95308 -17.53136 -17.39239 -16.41308 -16.32280 -15.82855 -15.61836 -15.42104 -15.00205 -14.85988 -14.60102 -14.38549 -14.24441 -14.13110 -13.62360 -13.48230 -13.32326 -12.96942 -12.74681 -12.21739 -12.11414 -12.04764 -11.64195 -11.59026 -11.51928 -11.38291 -11.14418 -11.02588 -10.78466 -10.49659 -10.41825 -10.27486 -10.09667 -10.02074 -9.95789 -9.54100 -9.33431 -8.48757 -8.09471 -7.97892 -6.47326 -3.88576 2.01997 2.24330 2.70057 2.93548 3.13798 3.23281 3.28655 3.41524 3.76791 3.82262 4.09299 4.29153 4.32128 4.34321 4.43527 4.48128 4.51908 4.65955 5.05416 5.10426 5.16098 5.19842 5.25509 5.27285 5.40847 5.43495 5.63702 5.68152 5.74025 5.84486 5.86771 6.05618 6.16484 6.22689 6.35510 6.47754 6.87541 7.01658 7.12645 7.28079 7.49189 7.49964 7.81930 7.93447 7.99353 8.54444 9.11549 9.46869 9.97701 10.70188 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017755 B = 0.002402 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.623226 B =11652.232101 C =11933.453104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.559 5.559 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.037 3.963 13 N -0.489 5.489 14 C 0.024 3.976 15 C 0.145 3.855 16 H 0.101 0.899 17 N -0.698 5.698 18 C 0.556 3.444 19 O -0.531 6.531 20 C -0.202 4.202 21 C 0.565 3.435 22 N -0.845 5.845 23 O -0.528 6.528 24 C -0.128 4.128 25 C -0.127 4.127 26 C 0.088 3.912 27 H 0.084 0.916 28 O -0.563 6.563 29 C 0.007 3.993 30 H 0.272 0.728 31 H 0.393 0.607 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.412 0.588 37 H 0.405 0.595 38 H 0.405 0.595 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.387 0.613 44 H 0.046 0.954 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.063 -22.168 -7.080 23.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.195 5.195 10 C 0.227 3.773 11 O -0.468 6.468 12 C -0.095 4.095 13 N -0.214 5.214 14 C -0.105 4.105 15 C 0.039 3.961 16 H 0.119 0.881 17 N -0.349 5.349 18 C 0.340 3.660 19 O -0.408 6.408 20 C -0.209 4.209 21 C 0.348 3.652 22 N -0.409 5.409 23 O -0.403 6.403 24 C -0.166 4.166 25 C -0.164 4.164 26 C 0.028 3.972 27 H 0.102 0.898 28 O -0.368 6.368 29 C -0.120 4.120 30 H 0.082 0.918 31 H 0.226 0.774 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.248 0.752 37 H 0.234 0.766 38 H 0.236 0.764 39 H 0.128 0.872 40 H 0.134 0.866 41 H 0.126 0.874 42 H 0.134 0.866 43 H 0.235 0.765 44 H 0.064 0.936 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.300 -22.296 -6.483 23.221 hybrid contribution 0.055 1.192 -0.869 1.476 sum 0.354 -21.104 -7.352 22.351 Atomic orbital electron populations 1.69611 1.05977 1.28295 1.50199 1.25281 0.95639 0.99804 0.97145 0.85850 0.79257 0.80733 0.78408 1.20379 1.20865 1.19368 1.19695 0.93359 0.82131 1.47814 0.87851 1.41852 1.09248 1.04582 1.63817 1.19654 0.88318 0.84620 0.84727 1.90417 1.13701 1.86711 1.55999 1.22124 0.94462 0.91068 1.01809 1.64610 1.13402 1.00269 1.43145 1.23439 0.96059 0.90939 1.00102 1.21910 0.91516 0.98118 0.84531 0.88139 1.45802 1.48034 1.28340 1.12743 1.19025 0.78502 0.80367 0.88130 1.90726 1.58091 1.55525 1.36455 1.21469 0.91799 1.11326 0.96264 1.19010 0.80407 0.80272 0.85537 1.43735 1.45848 1.28785 1.22503 1.90785 1.66853 1.54898 1.27800 1.23129 0.94492 0.95981 1.02952 1.23098 0.92726 0.96310 1.04274 1.23111 0.94492 0.94686 0.84895 0.89775 1.86345 1.49320 1.70069 1.31081 1.24198 0.98559 0.96344 0.92936 0.91769 0.77409 0.93261 0.88925 0.92921 0.89145 0.75194 0.76599 0.76351 0.87157 0.86643 0.87430 0.86577 0.76489 0.93597 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.18 13.05 55.50 0.72 -23.46 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 8 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 9 N -0.56 -13.87 5.29 -10.96 -0.06 -13.92 16 10 C 0.44 10.07 7.49 -10.98 -0.08 9.98 16 11 O -0.58 -14.80 13.09 5.55 0.07 -14.73 16 12 C 0.04 0.65 5.52 -4.97 -0.03 0.62 16 13 N -0.49 -7.88 5.26 -231.89 -1.22 -9.10 16 14 C 0.02 0.32 6.49 -2.75 -0.02 0.30 16 15 C 0.14 1.77 3.22 -66.58 -0.21 1.56 16 16 H 0.10 1.23 7.72 -51.93 -0.40 0.83 16 17 N -0.70 -8.17 4.66 -52.49 -0.24 -8.41 16 18 C 0.56 6.46 7.06 -10.99 -0.08 6.38 16 19 O -0.53 -7.34 16.42 5.55 0.09 -7.25 16 20 C -0.20 -1.95 2.28 -156.81 -0.36 -2.31 16 21 C 0.57 5.83 7.34 -10.99 -0.08 5.75 16 22 N -0.85 -5.86 8.87 31.22 0.28 -5.59 16 23 O -0.53 -7.30 17.54 5.56 0.10 -7.20 16 24 C -0.13 -1.08 9.76 -26.69 -0.26 -1.34 16 25 C -0.13 -0.95 9.76 -26.69 -0.26 -1.21 16 26 C 0.09 1.07 4.35 -24.87 -0.11 0.97 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 28 O -0.56 -6.24 12.05 -35.23 -0.42 -6.66 16 29 C 0.01 0.12 5.03 -1.90 -0.01 0.11 16 30 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 32 H 0.05 0.81 7.81 -51.93 -0.41 0.40 16 33 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.05 0.71 7.35 -51.93 -0.38 0.33 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.41 5.00 7.77 -40.82 -0.32 4.68 16 37 H 0.41 2.22 8.83 -40.82 -0.36 1.86 16 38 H 0.41 2.20 8.93 -40.82 -0.36 1.84 16 39 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.12 0.96 8.00 -51.93 -0.42 0.55 16 41 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.12 0.89 7.98 -51.93 -0.41 0.47 16 43 H 0.39 3.01 9.12 45.56 0.42 3.43 16 44 H 0.05 0.76 8.02 -51.93 -0.42 0.34 16 45 H 0.12 2.29 5.96 -51.93 -0.31 1.98 16 LS Contribution 382.13 15.07 5.76 5.76 Total: -1.00 -33.98 382.13 -7.00 -40.98 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: -5.32 Total: 20.89 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: -1.74 Total: 13.00 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: -0.52 Total: -60.48 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -0.16 Total: -35.84 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.98 -7.00 -40.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220246201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.404 kcal (2) G-P(sol) polarization free energy of solvation -33.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds