Wall clock time and date at job start Sat Apr 11 2020 06:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 119.99581 * 2 1 4 4 H 1.48506 * 109.47275 * 269.99821 * 3 2 1 5 5 H 1.48498 * 109.47199 * 30.00106 * 3 2 1 6 6 H 1.48507 * 109.46779 * 150.00013 * 3 2 1 7 7 C 1.38943 * 120.00300 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00335 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00153 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00144 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00052 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99715 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46883 * 180.02562 * 12 10 9 14 14 C 1.47903 * 110.99954 * 190.00170 * 13 12 10 15 15 C 1.53993 * 107.05634 * 145.84175 * 14 13 12 16 16 H 1.09004 * 110.30556 * 117.79344 * 15 14 13 17 17 N 1.46497 * 110.31151 * 239.85683 * 15 14 13 18 18 C 1.34772 * 120.00348 * 273.55138 * 17 15 14 19 19 O 1.21287 * 119.99765 * 4.92876 * 18 17 15 20 20 C 1.50700 * 120.00205 * 184.65175 * 18 17 15 21 21 C 1.50697 * 115.55083 * 64.80696 * 20 18 17 22 22 N 1.34776 * 120.00398 * 65.54668 * 21 20 18 23 23 O 1.21283 * 119.99784 * 245.55446 * 21 20 18 24 24 C 1.53004 * 117.50120 * 279.13402 * 20 18 17 25 25 C 1.53004 * 117.49842 * 210.47576 * 20 18 17 26 26 C 1.54594 * 105.14134 * 358.77436 * 15 14 13 27 27 H 1.09003 * 110.72036 * 96.40048 * 26 15 14 28 28 O 1.42892 * 110.72664 * 219.68085 * 26 15 14 29 29 C 1.48533 * 110.99731 * 307.39748 * 13 12 10 30 30 H 0.96997 * 119.99819 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99871 * 0.02562 * 9 7 2 32 32 H 1.09003 * 109.46873 * 60.00102 * 12 10 9 33 33 H 1.08998 * 109.47327 * 300.00125 * 12 10 9 34 34 H 1.09002 * 109.91833 * 26.49171 * 14 13 12 35 35 H 1.09002 * 109.91486 * 265.19601 * 14 13 12 36 36 H 0.97004 * 119.99775 * 93.54237 * 17 15 14 37 37 H 0.97003 * 119.99830 * 355.02923 * 22 21 20 38 38 H 0.96996 * 120.00159 * 175.03742 * 22 21 20 39 39 H 1.09004 * 117.49298 * 359.97438 * 24 20 18 40 40 H 1.08995 * 117.50020 * 145.01719 * 24 20 18 41 41 H 1.09004 * 117.49613 * 214.97998 * 25 20 18 42 42 H 1.08994 * 117.49967 * 359.97438 * 25 20 18 43 43 H 0.96705 * 114.00464 * 180.02562 * 28 26 15 44 44 H 1.08998 * 110.67262 * 318.71517 * 29 13 12 45 45 H 1.08999 * 110.67085 * 81.67980 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0466 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0890 -1.2033 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9975 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2439 -4.8629 0.0000 13 7 2.1986 -5.9795 0.0005 14 6 1.5095 -7.2661 -0.2387 15 6 2.4741 -8.1511 -1.0498 16 1 2.7326 -9.0462 -0.4839 17 7 1.8699 -8.5186 -2.3327 18 6 1.0716 -9.6013 -2.4162 19 8 0.7812 -10.2192 -1.4138 20 6 0.5348 -10.0403 -3.7542 21 6 1.5677 -10.5059 -4.7479 22 7 2.2818 -11.6227 -4.5044 23 8 1.7563 -9.8756 -5.7667 24 6 -0.6894 -9.3030 -4.3007 25 6 -0.8288 -10.7339 -3.7751 26 6 3.7286 -7.2770 -1.2782 27 1 4.4920 -7.4955 -0.5315 28 8 4.2422 -7.4648 -2.5984 29 6 3.1846 -5.8372 -1.1012 30 1 -0.4850 0.8400 -0.0004 31 1 0.3535 -2.3907 -0.0005 32 1 0.6170 -4.9208 -0.8897 33 1 0.6176 -4.9205 0.8902 34 1 0.5944 -7.0973 -0.8063 35 1 1.2768 -7.7451 0.7124 36 1 2.0444 -7.9826 -3.1222 37 1 2.1832 -12.0866 -3.6582 38 1 2.8945 -11.9624 -5.1752 39 1 -1.1067 -8.5007 -3.6923 40 1 -0.7479 -9.1550 -5.3790 41 1 -0.9789 -11.5268 -4.5080 42 1 -1.3374 -10.8731 -2.8212 43 1 5.0302 -6.9389 -2.7924 44 1 2.6956 -5.4958 -2.0135 45 1 3.9842 -5.1535 -0.8160 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220246201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:54 Heat of formation + Delta-G solvation = -144.127222 kcal Electronic energy + Delta-G solvation = -30160.581803 eV Core-core repulsion = 25791.996281 eV Total energy + Delta-G solvation = -4368.585522 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.91720 -40.98513 -40.06500 -39.26280 -37.01289 -36.92271 -35.97479 -35.22719 -34.67933 -33.33661 -31.59138 -29.28056 -28.19882 -26.62829 -25.83902 -23.57755 -23.35283 -22.70223 -21.56989 -21.08635 -20.83202 -19.89037 -19.33863 -18.51096 -18.11872 -17.82096 -17.24688 -17.00105 -16.72023 -16.61110 -16.34088 -16.18364 -15.86100 -15.77241 -15.35438 -15.15243 -14.95223 -14.82147 -14.30190 -14.06717 -14.00205 -13.76997 -13.49677 -13.29657 -12.98840 -12.78882 -12.66229 -12.54383 -12.42696 -12.25518 -12.14847 -12.00229 -11.70636 -11.49451 -11.29944 -11.03111 -10.89023 -10.77617 -10.32932 -10.21255 -10.02688 -9.42100 -8.48235 -5.96974 1.18255 1.36829 1.40881 1.41463 1.53809 1.83808 2.00701 2.26434 2.27694 2.63600 2.75333 3.07621 3.18474 3.28972 3.47135 3.59285 3.66820 3.70306 3.70769 3.83127 4.06591 4.18470 4.24293 4.33598 4.42292 4.49262 4.54867 4.63613 4.65786 4.80753 4.84483 4.85657 5.07933 5.10974 5.27662 5.40049 5.72325 5.76157 5.82426 6.02629 6.23082 6.35328 6.57541 6.70658 7.00588 7.10596 7.15973 7.52662 8.07376 8.69210 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017755 B = 0.002402 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.623226 B =11652.232101 C =11933.453104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.331 4.331 8 H 0.082 0.918 9 N -0.571 5.571 10 C 0.441 3.559 11 O -0.611 6.611 12 C 0.048 3.952 13 N -0.500 5.500 14 C 0.029 3.971 15 C 0.148 3.852 16 H 0.108 0.892 17 N -0.696 5.696 18 C 0.559 3.441 19 O -0.552 6.552 20 C -0.214 4.214 21 C 0.565 3.435 22 N -0.827 5.827 23 O -0.569 6.569 24 C -0.130 4.130 25 C -0.108 4.108 26 C 0.105 3.895 27 H 0.096 0.904 28 O -0.565 6.565 29 C 0.012 3.988 30 H 0.278 0.722 31 H 0.395 0.605 32 H 0.065 0.935 33 H 0.111 0.889 34 H 0.054 0.946 35 H 0.100 0.900 36 H 0.410 0.590 37 H 0.415 0.585 38 H 0.414 0.586 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.127 0.873 42 H 0.118 0.882 43 H 0.401 0.599 44 H 0.032 0.968 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.317 -23.507 -7.252 24.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.460 4.460 8 H 0.100 0.900 9 N -0.208 5.208 10 C 0.228 3.772 11 O -0.497 6.497 12 C -0.084 4.084 13 N -0.226 5.226 14 C -0.100 4.100 15 C 0.042 3.958 16 H 0.125 0.875 17 N -0.346 5.346 18 C 0.345 3.655 19 O -0.431 6.431 20 C -0.220 4.220 21 C 0.348 3.652 22 N -0.391 5.391 23 O -0.448 6.448 24 C -0.167 4.167 25 C -0.145 4.145 26 C 0.044 3.956 27 H 0.114 0.886 28 O -0.373 6.373 29 C -0.116 4.116 30 H 0.087 0.913 31 H 0.229 0.771 32 H 0.083 0.917 33 H 0.129 0.871 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.246 0.754 37 H 0.245 0.755 38 H 0.246 0.754 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.145 0.855 42 H 0.136 0.864 43 H 0.252 0.748 44 H 0.050 0.950 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.071 -23.681 -6.648 24.596 hybrid contribution 0.210 1.522 -0.816 1.739 sum 0.139 -22.159 -7.463 23.383 Atomic orbital electron populations 1.69674 1.06897 1.29333 1.50279 1.26049 0.96519 1.02476 0.96266 0.84931 0.77935 0.76880 0.78630 1.19661 1.19666 1.19630 1.19664 0.92741 0.83810 1.49825 0.90028 1.41922 1.09320 1.04722 1.64861 1.20576 0.88296 0.85800 0.82532 1.90417 1.15288 1.87501 1.56529 1.22015 0.94262 0.88704 1.03406 1.64585 1.13554 1.00820 1.43620 1.23453 0.96090 0.89556 1.00899 1.21851 0.91136 0.98024 0.84752 0.87455 1.45807 1.48011 1.28423 1.12396 1.19254 0.77900 0.79829 0.88553 1.90716 1.58831 1.56112 1.37394 1.21413 0.92389 1.13022 0.95184 1.19114 0.80510 0.80568 0.85022 1.43626 1.44826 1.27623 1.23019 1.90769 1.68152 1.56351 1.29493 1.23186 0.93690 0.96843 1.03012 1.23212 0.90431 0.96189 1.04657 1.22906 0.94789 0.92102 0.85763 0.88580 1.86326 1.50244 1.70294 1.30428 1.24011 0.97533 0.98079 0.92008 0.91293 0.77092 0.91667 0.87102 0.92771 0.88192 0.75359 0.75486 0.75354 0.86965 0.86661 0.85525 0.86412 0.74791 0.94951 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.43 13.05 21.66 0.28 -49.15 16 2 C -0.01 -0.70 5.50 84.92 0.47 -0.24 16 3 Si 0.99 42.46 29.55 68.60 2.03 44.48 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.33 -18.46 9.68 84.04 0.81 -17.65 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.57 -28.89 5.29 -306.98 -1.62 -30.51 16 10 C 0.44 20.41 7.49 87.66 0.66 21.07 16 11 O -0.61 -31.88 13.09 -3.06 -0.04 -31.92 16 12 C 0.05 1.64 5.52 85.56 0.47 2.11 16 13 N -0.50 -15.72 5.26 -887.56 -4.67 -20.39 16 14 C 0.03 0.72 6.49 86.45 0.56 1.28 16 15 C 0.15 3.37 3.22 45.87 0.15 3.52 16 16 H 0.11 2.38 7.72 -2.38 -0.02 2.36 16 17 N -0.70 -15.27 4.66 -438.38 -2.04 -17.31 16 18 C 0.56 12.08 7.06 87.66 0.62 12.70 16 19 O -0.55 -14.21 16.42 -3.05 -0.05 -14.26 16 20 C -0.21 -3.79 2.28 -53.67 -0.12 -3.91 16 21 C 0.56 10.88 7.34 87.66 0.64 11.53 16 22 N -0.83 -9.97 8.87 -173.53 -1.54 -11.51 16 23 O -0.57 -15.34 17.54 -3.04 -0.05 -15.40 16 24 C -0.13 -2.00 9.76 30.62 0.30 -1.71 16 25 C -0.11 -1.38 9.76 30.62 0.30 -1.08 16 26 C 0.10 2.42 4.35 31.80 0.14 2.56 16 27 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 28 O -0.57 -11.78 12.05 -148.98 -1.80 -13.57 16 29 C 0.01 0.37 5.03 86.65 0.44 0.80 16 30 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 31 H 0.40 19.17 7.90 -92.71 -0.73 18.43 16 32 H 0.07 2.07 7.81 -2.39 -0.02 2.05 16 33 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 34 H 0.05 1.36 7.35 -2.39 -0.02 1.34 16 35 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.41 9.50 7.77 -92.71 -0.72 8.78 16 37 H 0.41 3.65 8.83 -92.71 -0.82 2.83 16 38 H 0.41 3.77 8.93 -92.71 -0.83 2.95 16 39 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.12 1.80 8.00 -2.39 -0.02 1.79 16 41 H 0.13 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.12 1.52 7.98 -2.39 -0.02 1.50 16 43 H 0.40 5.79 9.12 -74.05 -0.68 5.11 16 44 H 0.03 1.08 8.02 -2.39 -0.02 1.06 16 45 H 0.09 3.51 5.96 -2.39 -0.01 3.49 16 Total: -1.00 -73.40 382.13 -6.74 -80.14 By element: Atomic # 1 Polarization: 51.06 SS G_CDS: -2.67 Total: 48.39 kcal Atomic # 6 Polarization: 25.57 SS G_CDS: 5.43 Total: 31.00 kcal Atomic # 7 Polarization: -119.28 SS G_CDS: -9.59 Total: -128.87 kcal Atomic # 8 Polarization: -73.21 SS G_CDS: -1.94 Total: -75.15 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -73.40 -6.74 -80.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220246201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.986 kcal (2) G-P(sol) polarization free energy of solvation -73.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds