Wall clock time and date at job start Sat Apr 11 2020 06:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86807 * 119.99913 * 2 1 4 4 H 1.48500 * 109.46721 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47371 * 300.00530 * 3 2 1 6 6 H 1.48498 * 109.46725 * 60.00791 * 3 2 1 7 7 C 1.38946 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99571 * 179.97438 * 7 2 1 9 9 N 1.37090 * 120.00187 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00510 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99576 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00427 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47021 * 179.97438 * 12 10 9 14 14 C 1.47901 * 110.99787 * 170.00039 * 13 12 10 15 15 C 1.53991 * 107.05988 * 145.85184 * 14 13 12 16 16 H 1.08997 * 110.31391 * 117.69014 * 15 14 13 17 17 N 1.46506 * 110.30664 * 239.85889 * 15 14 13 18 18 C 1.34778 * 119.99889 * 270.71230 * 17 15 14 19 19 O 1.21276 * 119.99892 * 0.02562 * 18 17 15 20 20 C 1.50699 * 119.99557 * 180.02562 * 18 17 15 21 21 H 1.09001 * 110.21838 * 41.93170 * 20 18 17 22 22 C 1.54483 * 110.24691 * 279.99685 * 20 18 17 23 23 C 1.54621 * 101.76669 * 215.58845 * 22 20 18 24 24 C 1.51286 * 104.19831 * 24.80012 * 23 22 20 25 25 O 1.21281 * 124.94355 * 163.78811 * 24 23 22 26 26 N 1.34416 * 110.11121 * 343.74406 * 24 23 22 27 27 C 1.54596 * 105.13803 * 358.77312 * 15 14 13 28 28 H 1.08993 * 110.72459 * 96.58443 * 27 15 14 29 29 O 1.42905 * 110.72301 * 219.68961 * 27 15 14 30 30 C 1.48721 * 111.05024 * 287.57731 * 13 12 10 31 31 H 0.97004 * 119.99681 * 359.97438 * 1 2 3 32 32 H 0.97007 * 120.00003 * 0.02562 * 9 7 2 33 33 H 1.09011 * 109.46936 * 59.99962 * 12 10 9 34 34 H 1.08998 * 109.47165 * 299.99943 * 12 10 9 35 35 H 1.09005 * 109.92028 * 26.49147 * 14 13 12 36 36 H 1.09007 * 109.91927 * 265.20463 * 14 13 12 37 37 H 0.97000 * 119.99658 * 90.70959 * 17 15 14 38 38 H 1.08996 * 110.96957 * 333.70700 * 22 20 18 39 39 H 1.08999 * 110.97001 * 97.43037 * 22 20 18 40 40 H 1.09003 * 110.48942 * 143.47738 * 23 22 20 41 41 H 1.09008 * 110.48980 * 266.12066 * 23 22 20 42 42 H 0.97008 * 124.34818 * 179.58828 * 26 24 23 43 43 H 0.96696 * 114.00036 * 177.54910 * 29 27 15 44 44 H 1.09007 * 110.83986 * 81.96249 * 30 13 12 45 45 H 1.09003 * 110.58879 * 318.77565 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3966 -1.2123 6 1 1.8894 2.3963 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2032 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2101 -3.5578 -0.0010 12 6 1.2437 -4.8629 -0.0011 13 7 2.1984 -5.9794 -0.0016 14 6 1.5092 -7.2660 0.2376 15 6 2.2556 -8.3370 -0.5793 16 1 2.6802 -9.0908 0.0836 17 7 1.3498 -8.9614 -1.5468 18 6 0.6321 -10.0466 -1.1950 19 8 0.7358 -10.5059 -0.0774 20 6 -0.2991 -10.6891 -2.1904 21 1 0.1721 -10.7345 -3.1723 22 6 -1.6246 -9.8995 -2.2695 23 6 -2.6538 -11.0323 -2.4890 24 6 -1.9878 -12.2576 -1.9027 25 8 -2.5580 -13.2900 -1.6202 26 7 -0.6719 -12.0357 -1.7413 27 6 3.3812 -7.5729 -1.3136 28 1 4.3193 -7.6458 -0.7636 29 8 3.5392 -8.0636 -2.6465 30 6 2.8641 -6.1124 -1.3248 31 1 -0.4850 0.8401 0.0004 32 1 0.3533 -2.3906 -0.0005 33 1 0.6174 -4.9204 -0.8915 34 1 0.6168 -4.9209 0.8886 35 1 0.4733 -7.2000 -0.0953 36 1 1.5459 -7.5154 1.2981 37 1 1.2666 -8.5937 -2.4406 38 1 -1.8197 -9.3705 -1.3367 39 1 -1.6176 -9.2091 -3.1129 40 1 -3.5815 -10.8126 -1.9604 41 1 -2.8443 -11.1739 -3.5530 42 1 -0.0487 -12.6826 -1.3750 43 1 4.2076 -7.5924 -3.1624 44 1 3.6939 -5.4112 -1.4137 45 1 2.1462 -5.9646 -2.1317 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220799327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:02 Heat of formation + Delta-G solvation = -135.652498 kcal Electronic energy + Delta-G solvation = -29674.917871 eV Core-core repulsion = 25306.699840 eV Total energy + Delta-G solvation = -4368.218030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.23133 -40.07810 -38.89072 -37.91760 -36.49409 -35.94952 -34.52100 -33.87524 -31.77170 -31.35638 -30.64202 -28.88504 -27.93623 -26.43169 -24.32124 -23.26193 -21.60967 -21.34249 -20.87167 -20.59457 -19.29433 -18.34579 -18.02528 -17.78222 -17.37355 -16.48101 -16.29464 -15.91826 -15.51627 -15.30810 -15.08806 -14.85009 -14.67963 -14.23599 -14.07544 -13.99666 -13.73143 -13.56362 -13.45682 -13.31162 -13.09335 -12.91802 -12.48900 -12.25366 -12.12331 -11.74914 -11.65186 -11.54443 -11.39696 -11.15047 -10.98226 -10.45857 -10.39181 -10.28465 -10.25505 -10.16813 -9.56664 -9.54036 -9.40824 -8.61517 -8.11954 -8.01562 -6.47505 -3.88478 2.14127 2.16896 2.55834 3.05284 3.11773 3.22913 3.29497 3.60022 3.83082 3.83255 3.90853 4.04272 4.20865 4.24247 4.41067 4.43447 4.48149 4.54935 4.87372 4.97443 5.05086 5.12329 5.16883 5.18482 5.26029 5.27395 5.39989 5.51304 5.67355 5.68129 5.77331 5.84399 6.05661 6.14760 6.19945 6.30218 6.59803 6.89375 7.00757 7.14555 7.31978 7.49798 7.79737 7.87783 7.99982 8.55161 9.12306 9.47947 9.99260 10.70239 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018036 B = 0.002183 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.071257 B =12825.377656 C =13794.612329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.444 3.556 11 O -0.578 6.578 12 C 0.038 3.962 13 N -0.486 5.486 14 C 0.024 3.976 15 C 0.145 3.855 16 H 0.104 0.896 17 N -0.702 5.702 18 C 0.505 3.495 19 O -0.530 6.530 20 C 0.114 3.886 21 H 0.108 0.892 22 C -0.123 4.123 23 C -0.155 4.155 24 C 0.523 3.477 25 O -0.531 6.531 26 N -0.709 5.709 27 C 0.093 3.907 28 H 0.086 0.914 29 O -0.564 6.564 30 C 0.010 3.990 31 H 0.271 0.729 32 H 0.392 0.608 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.091 0.909 37 H 0.408 0.592 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.416 0.584 43 H 0.387 0.613 44 H 0.104 0.896 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.646 -18.029 -9.057 20.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.229 3.771 11 O -0.462 6.462 12 C -0.093 4.093 13 N -0.211 5.211 14 C -0.105 4.105 15 C 0.039 3.961 16 H 0.122 0.878 17 N -0.355 5.355 18 C 0.289 3.711 19 O -0.405 6.405 20 C 0.005 3.995 21 H 0.126 0.874 22 C -0.161 4.161 23 C -0.195 4.195 24 C 0.309 3.691 25 O -0.407 6.407 26 N -0.365 5.365 27 C 0.033 3.967 28 H 0.104 0.896 29 O -0.369 6.369 30 C -0.118 4.118 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.244 0.756 38 H 0.108 0.892 39 H 0.121 0.879 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.256 0.744 43 H 0.235 0.765 44 H 0.122 0.878 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.353 -18.967 -7.537 20.454 hybrid contribution -0.132 1.265 -0.970 1.600 sum -1.485 -17.702 -8.507 19.696 Atomic orbital electron populations 1.69618 1.05948 1.28106 1.50601 1.25269 0.95642 0.99755 0.97312 0.85803 0.79697 0.81125 0.77742 1.19218 1.20767 1.20712 1.19733 0.93365 0.82144 1.47542 0.87855 1.41869 1.09188 1.04602 1.64448 1.19657 0.88385 0.84416 0.84604 1.90503 1.13621 1.86958 1.55133 1.22079 0.93938 0.91555 1.01756 1.64447 1.26827 1.00996 1.28848 1.23415 0.96745 0.89023 1.01302 1.21878 0.88777 0.95007 0.90423 0.87760 1.45755 1.42896 1.29767 1.17036 1.20668 0.80913 0.80659 0.88821 1.90759 1.65460 1.62990 1.21318 1.21587 0.96546 0.83929 0.97472 0.87443 1.22636 0.91031 0.97427 1.05016 1.22376 1.00135 0.93008 1.03954 1.20842 0.82226 0.89019 0.76989 1.90778 1.67750 1.30227 1.51976 1.45947 1.10195 1.15201 1.65190 1.23045 0.97895 0.92212 0.83585 0.89594 1.86330 1.63852 1.61917 1.24812 1.24023 1.00584 0.96654 0.90533 0.91887 0.77522 0.93143 0.89144 0.92862 0.89084 0.75585 0.89182 0.87873 0.87402 0.87203 0.74433 0.76490 0.87785 0.93313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.87 13.05 55.50 0.72 -23.15 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 20.46 29.55 -169.99 -5.02 15.44 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.03 9.68 -14.94 -0.14 -8.18 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.56 -13.70 5.29 -10.97 -0.06 -13.76 16 10 C 0.44 9.90 7.61 -10.99 -0.08 9.82 16 11 O -0.58 -14.77 14.64 5.55 0.08 -14.69 16 12 C 0.04 0.63 5.20 -4.98 -0.03 0.61 16 13 N -0.49 -7.21 4.90 -231.72 -1.14 -8.35 16 14 C 0.02 0.29 6.46 -2.76 -0.02 0.27 16 15 C 0.14 1.49 3.30 -66.57 -0.22 1.27 16 16 H 0.10 1.18 7.56 -51.93 -0.39 0.79 16 17 N -0.70 -5.82 4.61 -52.49 -0.24 -6.07 16 18 C 0.51 4.66 7.03 -10.99 -0.08 4.58 16 19 O -0.53 -7.05 16.19 5.56 0.09 -6.96 16 20 C 0.11 0.71 3.93 -68.16 -0.27 0.45 16 21 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 22 C -0.12 -0.58 6.67 -25.10 -0.17 -0.75 16 23 C -0.15 -0.88 6.86 -26.74 -0.18 -1.06 16 24 C 0.52 5.17 8.43 -10.86 -0.09 5.07 16 25 O -0.53 -7.58 18.03 5.56 0.10 -7.48 16 26 N -0.71 -6.00 5.46 -53.88 -0.29 -6.29 16 27 C 0.09 0.92 4.34 -24.87 -0.11 0.81 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 29 O -0.56 -4.45 12.10 -35.23 -0.43 -4.87 16 30 C 0.01 0.13 5.67 -1.79 -0.01 0.12 16 31 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.39 9.10 7.90 -40.82 -0.32 8.78 16 33 H 0.05 0.74 7.84 -51.92 -0.41 0.33 16 34 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 35 H 0.05 0.60 7.56 -51.93 -0.39 0.21 16 36 H 0.09 1.12 8.14 -51.92 -0.42 0.69 16 37 H 0.41 2.70 7.86 -40.82 -0.32 2.38 16 38 H 0.09 0.53 7.90 -51.93 -0.41 0.12 16 39 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 40 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.11 0.41 8.14 -51.92 -0.42 -0.02 16 42 H 0.42 3.61 8.94 -40.82 -0.36 3.25 16 43 H 0.39 1.82 9.12 45.56 0.42 2.23 16 44 H 0.10 1.62 7.11 -51.93 -0.37 1.25 16 45 H 0.05 0.60 7.81 -51.93 -0.41 0.19 16 LS Contribution 377.82 15.07 5.69 5.69 Total: -1.00 -35.94 377.82 -7.42 -43.36 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -5.44 Total: 13.63 kcal Atomic # 6 Polarization: 14.98 SS G_CDS: -1.49 Total: 13.49 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -1.01 Total: -57.61 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.15 Total: -34.01 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.94 -7.42 -43.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220799327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.289 kcal (2) G-P(sol) polarization free energy of solvation -35.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds