Wall clock time and date at job start Sat Apr 11 2020 05:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00060 * 2 1 4 4 H 1.48493 * 109.47322 * 239.99732 * 3 2 1 5 5 H 1.48502 * 109.47114 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47151 * 119.99784 * 3 2 1 7 7 C 1.38808 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00092 * 195.64936 * 7 2 1 9 9 N 1.36936 * 120.00269 * 15.64750 * 7 2 1 10 10 C 1.47610 * 118.64049 * 26.49112 * 9 7 2 11 11 C 1.53944 * 112.17087 * 137.86679 * 10 9 7 12 12 C 1.50881 * 110.07253 * 319.44559 * 11 10 9 13 13 C 1.52573 * 109.37719 * 91.86860 * 12 11 10 14 14 H 1.09007 * 108.50874 * 36.07708 * 13 12 11 15 15 N 1.46500 * 108.51040 * 153.72099 * 13 12 11 16 16 C 1.34777 * 119.99581 * 205.00297 * 15 13 12 17 17 O 1.21281 * 120.00258 * 0.02562 * 16 15 13 18 18 C 1.50706 * 119.99721 * 179.97438 * 16 15 13 19 19 C 1.52995 * 109.47101 * 179.97438 * 18 16 15 20 20 N 1.46500 * 109.46960 * 180.02562 * 19 18 16 21 21 C 1.35053 * 126.03331 * 124.72238 * 20 19 18 22 22 C 1.35371 * 107.72659 * 179.83719 * 21 20 19 23 23 Cl 1.73602 * 126.04632 * 180.17546 * 22 21 20 24 24 C 1.39932 * 107.90828 * 0.42286 * 22 21 20 25 25 N 1.30853 * 108.21208 * 359.73665 * 24 22 21 26 26 C 1.47087 * 114.32848 * 274.97876 * 13 12 11 27 27 C 1.44579 * 118.64585 * 206.47368 * 9 7 2 28 28 H 0.97000 * 120.00069 * 359.97438 * 1 2 3 29 29 H 1.08997 * 108.94899 * 258.55495 * 10 9 7 30 30 H 1.09000 * 108.94454 * 17.27584 * 10 9 7 31 31 H 1.09004 * 109.40087 * 199.24827 * 11 10 9 32 32 H 1.09002 * 109.36269 * 79.62010 * 11 10 9 33 33 H 1.08997 * 109.48771 * 331.89439 * 12 11 10 34 34 H 1.08997 * 109.49265 * 211.84670 * 12 11 10 35 35 H 0.96998 * 120.00383 * 24.99883 * 15 13 12 36 36 H 1.08993 * 109.47476 * 300.00526 * 18 16 15 37 37 H 1.09010 * 109.46768 * 60.00233 * 18 16 15 38 38 H 1.09002 * 109.47695 * 300.00936 * 19 18 16 39 39 H 1.09006 * 109.47217 * 60.00849 * 19 18 16 40 40 H 1.07994 * 126.13478 * 359.97438 * 21 20 19 41 41 H 1.07999 * 125.89699 * 179.71451 * 24 22 21 42 42 H 1.08995 * 109.32850 * 183.06457 * 26 13 12 43 43 H 1.09007 * 109.32579 * 302.53873 * 26 13 12 44 44 H 1.09005 * 109.45006 * 150.68581 * 27 9 7 45 45 H 1.08994 * 109.45062 * 30.76110 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0603 -1.2194 0.2529 9 7 1.3636 -2.3662 -0.3188 10 6 0.1790 -2.2996 -1.1969 11 6 0.1699 -3.4256 -2.2466 12 6 1.5609 -3.6369 -2.7915 13 6 2.2699 -4.7079 -1.9681 14 1 1.5384 -5.4625 -1.6786 15 7 3.2853 -5.3456 -2.8100 16 6 3.6931 -6.6013 -2.5396 17 8 3.2192 -7.2037 -1.5996 18 6 4.7372 -7.2575 -3.4059 19 6 5.0180 -8.6686 -2.8858 20 7 6.0334 -9.3062 -3.7276 21 6 7.1982 -9.8401 -3.3009 22 6 7.8482 -10.3294 -4.3829 23 17 9.3923 -11.1228 -4.3745 24 6 7.0579 -10.0776 -5.5099 25 7 5.9703 -9.4646 -5.1180 26 6 2.9226 -4.2030 -0.7505 27 6 1.8696 -3.6098 0.2177 28 1 -0.4850 0.8400 0.0004 29 1 -0.7198 -2.3789 -0.5854 30 1 0.1733 -1.3385 -1.7111 31 1 -0.5006 -3.1549 -3.0623 32 1 -0.1810 -4.3481 -1.7840 33 1 2.1202 -2.7032 -2.7324 34 1 1.4993 -3.9588 -3.8310 35 1 3.6639 -4.8640 -3.5621 36 1 4.3747 -7.3136 -4.4323 37 1 5.6551 -6.6703 -3.3764 38 1 5.3806 -8.6122 -1.8594 39 1 4.1003 -9.2561 -2.9151 40 1 7.5474 -9.8728 -2.2795 41 1 7.3034 -10.3431 -6.5275 42 1 3.4467 -5.0211 -0.2564 43 1 3.6409 -3.4289 -1.0208 44 1 1.0472 -4.3153 0.3361 45 1 2.3316 -3.4254 1.1875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273474146.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:05 Heat of formation + Delta-G solvation = 36.038524 kcal Electronic energy + Delta-G solvation = -26822.718169 eV Core-core repulsion = 22902.654385 eV Total energy + Delta-G solvation = -3920.063784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.28404 -41.17056 -39.25687 -37.36898 -36.44442 -35.24889 -34.11180 -33.32206 -32.13397 -31.31499 -30.21916 -27.91146 -26.13084 -25.52245 -24.60576 -22.23907 -22.07001 -21.52076 -21.33958 -20.80308 -18.73624 -18.56985 -17.69475 -17.33947 -16.95948 -16.82370 -16.14999 -15.84426 -15.60662 -15.37866 -15.24919 -15.22502 -14.80609 -14.39460 -14.26173 -14.15756 -13.96853 -13.60276 -13.46960 -13.16138 -13.01463 -12.73839 -12.67628 -12.46130 -12.43437 -12.26016 -12.10802 -12.06061 -11.73545 -11.54497 -11.49514 -11.44858 -11.34678 -10.90382 -10.58947 -10.43011 -10.06262 -9.42911 -8.64236 -7.83578 -5.29769 0.72251 0.95178 1.47991 1.48952 1.55928 1.58876 1.62552 1.76922 2.26152 2.53055 3.29965 3.47557 3.62127 3.68073 3.78250 3.83607 3.92667 4.05115 4.13155 4.31064 4.34379 4.40269 4.45792 4.46255 4.60918 4.69356 4.70756 4.78666 4.80783 4.97092 5.00001 5.13566 5.16443 5.24993 5.34131 5.37141 5.51213 5.57416 5.59968 5.69602 5.80986 5.83133 6.42620 6.50804 6.58026 7.20672 7.25192 7.96597 8.35946 9.21388 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.023363 B = 0.001849 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.164073 B =15143.735110 C =15655.020660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.963 3.037 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.279 1.279 7 C -0.261 4.261 8 H 0.064 0.936 9 N -0.601 5.601 10 C 0.187 3.813 11 C -0.130 4.130 12 C -0.102 4.102 13 C 0.170 3.830 14 H 0.060 0.940 15 N -0.716 5.716 16 C 0.518 3.482 17 O -0.580 6.580 18 C -0.139 4.139 19 C 0.152 3.848 20 N -0.367 5.367 21 C 0.080 3.920 22 C -0.205 4.205 23 Cl -0.042 7.042 24 C 0.062 3.938 25 N -0.310 5.310 26 C -0.135 4.135 27 C 0.158 3.842 28 H 0.248 0.752 29 H -0.009 1.009 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.412 0.588 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.090 0.910 40 H 0.209 0.791 41 H 0.210 0.790 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.036 0.964 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.824 -19.874 -11.862 27.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.791 3.209 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.205 1.205 7 C -0.392 4.392 8 H 0.082 0.918 9 N -0.324 5.324 10 C 0.062 3.938 11 C -0.169 4.169 12 C -0.140 4.140 13 C 0.066 3.934 14 H 0.078 0.922 15 N -0.367 5.367 16 C 0.305 3.695 17 O -0.461 6.461 18 C -0.179 4.179 19 C 0.032 3.968 20 N -0.148 5.148 21 C -0.069 4.069 22 C -0.243 4.243 23 Cl -0.014 7.014 24 C -0.125 4.125 25 N -0.132 5.132 26 C -0.176 4.176 27 C 0.031 3.969 28 H 0.057 0.943 29 H 0.009 0.991 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.249 0.751 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.139 0.861 39 H 0.109 0.891 40 H 0.226 0.774 41 H 0.227 0.773 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.054 0.946 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.244 -19.654 -11.461 26.325 hybrid contribution 1.106 0.968 0.307 1.502 sum 14.350 -18.685 -11.153 26.067 Atomic orbital electron populations 1.70225 1.06511 1.25680 1.55718 1.25744 0.95996 1.01292 1.01385 0.85414 0.77567 0.79617 0.78260 1.20257 1.22301 1.20501 1.19427 0.92482 0.86041 1.41246 0.91827 1.43846 1.32370 1.02184 1.53952 1.20800 0.86999 0.96146 0.89856 1.21832 0.97073 0.99073 0.98918 1.21122 0.95927 0.98269 0.98674 1.19698 0.89409 0.94107 0.90223 0.92163 1.46290 1.42245 1.15062 1.33112 1.20728 0.82685 0.81498 0.84629 1.90720 1.58656 1.64525 1.32153 1.21775 0.99360 0.95719 1.01062 1.21542 0.90453 0.92067 0.92776 1.48652 1.15817 1.44912 1.05443 1.22795 0.86622 0.96319 1.01115 1.20924 0.94095 1.14649 0.94669 1.98332 1.25570 1.78803 1.98740 1.24303 0.90528 0.96900 1.00737 1.77446 1.22564 1.22848 0.90304 1.21595 0.99436 0.99393 0.97167 1.20668 0.94632 0.87317 0.94332 0.94261 0.99125 0.93721 0.90551 0.92752 0.92185 0.89747 0.75124 0.86712 0.86693 0.86130 0.89149 0.77387 0.77299 0.92411 0.92849 0.94610 0.94481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.41 11.01 21.65 0.24 -54.17 16 2 C -0.05 -2.67 4.87 84.86 0.41 -2.26 16 3 Si 0.96 44.08 29.58 68.60 2.03 46.11 16 4 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.26 -13.92 9.44 84.03 0.79 -13.13 16 8 H 0.06 3.33 7.88 -2.91 -0.02 3.30 16 9 N -0.60 -29.02 2.27 -698.36 -1.59 -30.61 16 10 C 0.19 8.73 4.66 86.49 0.40 9.14 16 11 C -0.13 -4.49 5.71 30.22 0.17 -4.31 16 12 C -0.10 -3.05 4.97 29.76 0.15 -2.90 16 13 C 0.17 5.00 1.93 43.01 0.08 5.08 16 14 H 0.06 1.98 6.81 -2.38 -0.02 1.97 16 15 N -0.72 -15.72 4.95 -452.04 -2.24 -17.95 16 16 C 0.52 11.32 7.57 87.66 0.66 11.99 16 17 O -0.58 -17.18 15.15 -3.03 -0.05 -17.23 16 18 C -0.14 -1.98 5.88 29.85 0.18 -1.80 16 19 C 0.15 2.19 5.80 86.38 0.50 2.69 16 20 N -0.37 -5.69 3.68 -347.94 -1.28 -6.97 16 21 C 0.08 1.04 11.43 83.53 0.95 1.99 16 22 C -0.20 -2.98 6.65 22.02 0.15 -2.83 16 23 Cl -0.04 -0.58 29.30 -2.72 -0.08 -0.66 16 24 C 0.06 0.93 12.02 85.25 1.02 1.95 16 25 N -0.31 -5.65 12.42 -56.97 -0.71 -6.36 16 26 C -0.13 -4.60 5.16 29.39 0.15 -4.45 16 27 C 0.16 6.56 5.66 87.37 0.49 7.06 16 28 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 29 H -0.01 -0.49 8.03 -2.39 -0.02 -0.51 16 30 H 0.04 2.34 6.33 -2.39 -0.02 2.32 16 31 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 32 H 0.05 1.82 7.32 -2.39 -0.02 1.80 16 33 H 0.06 2.11 7.48 -2.39 -0.02 2.09 16 34 H 0.08 1.99 8.04 -2.39 -0.02 1.97 16 35 H 0.41 6.75 8.56 -92.71 -0.79 5.95 16 36 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.12 1.46 8.03 -2.39 -0.02 1.44 16 39 H 0.09 1.48 8.10 -2.38 -0.02 1.46 16 40 H 0.21 1.44 8.06 -2.91 -0.02 1.41 16 41 H 0.21 1.99 8.06 -2.91 -0.02 1.96 16 42 H 0.06 1.93 7.45 -2.39 -0.02 1.91 16 43 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 44 H 0.04 1.45 8.06 -2.38 -0.02 1.43 16 45 H 0.04 1.59 7.99 -2.39 -0.02 1.57 16 Total: -1.00 -68.12 378.51 2.66 -65.45 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.21 Total: 14.18 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 6.12 Total: 8.21 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -5.57 Total: -116.06 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.05 Total: -17.23 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.08 Total: -0.66 kcal Total: -68.12 2.66 -65.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273474146.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.492 kcal (2) G-P(sol) polarization free energy of solvation -68.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds