Wall clock time and date at job start Sat Apr 11 2020 05:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99843 * 2 1 4 4 H 1.48506 * 109.46934 * 240.00245 * 3 2 1 5 5 H 1.48497 * 109.47097 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47153 * 120.00444 * 3 2 1 7 7 C 1.38811 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00133 * 160.39904 * 7 2 1 9 9 N 1.36939 * 119.99488 * 340.40090 * 7 2 1 10 10 C 1.50168 * 120.54273 * 336.70670 * 9 7 2 11 11 C 1.46237 * 107.53517 * 109.56327 * 10 9 7 12 12 C 1.52528 * 114.27517 * 58.40856 * 11 10 9 13 13 C 1.50128 * 105.41748 * 270.59372 * 12 11 10 14 14 H 1.08998 * 109.20897 * 337.34066 * 13 12 11 15 15 N 1.46502 * 109.20999 * 217.98206 * 13 12 11 16 16 C 1.34779 * 120.00125 * 154.36563 * 15 13 12 17 17 O 1.21284 * 119.99722 * 359.97438 * 16 15 13 18 18 C 1.50699 * 120.00170 * 180.02562 * 16 15 13 19 19 C 1.52997 * 109.47130 * 179.97438 * 18 16 15 20 20 N 1.46502 * 109.47085 * 179.97438 * 19 18 16 21 21 C 1.35039 * 126.03718 * 124.71459 * 20 19 18 22 22 C 1.35380 * 107.72905 * 179.83814 * 21 20 19 23 23 Cl 1.73596 * 126.04807 * 180.15867 * 22 21 20 24 24 C 1.39933 * 107.90567 * 0.42489 * 22 21 20 25 25 N 1.30858 * 108.21041 * 359.73637 * 24 22 21 26 26 C 1.54848 * 110.81417 * 97.68406 * 13 12 11 27 27 C 1.43437 * 120.53407 * 156.68393 * 9 7 2 28 28 H 0.97002 * 119.99787 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.84204 * 350.06192 * 10 9 7 30 30 H 1.09000 * 109.84742 * 229.07121 * 10 9 7 31 31 H 1.08996 * 108.52599 * 297.17036 * 11 10 9 32 32 H 1.08993 * 108.40693 * 179.55975 * 11 10 9 33 33 H 1.08999 * 110.24849 * 151.62467 * 12 11 10 34 34 H 1.09001 * 110.37115 * 29.63017 * 12 11 10 35 35 H 0.97003 * 119.99828 * 334.35534 * 15 13 12 36 36 H 1.08999 * 109.46952 * 299.99523 * 18 16 15 37 37 H 1.09003 * 109.46952 * 59.99412 * 18 16 15 38 38 H 1.08999 * 109.47074 * 299.99767 * 19 18 16 39 39 H 1.08995 * 109.47141 * 59.99870 * 19 18 16 40 40 H 1.07997 * 126.13923 * 359.97438 * 21 20 19 41 41 H 1.07991 * 125.89583 * 179.76062 * 24 22 21 42 42 H 1.08997 * 109.35767 * 81.33670 * 26 13 12 43 43 H 1.09001 * 109.36020 * 200.93005 * 26 13 12 44 44 H 1.09000 * 108.15898 * 33.30749 * 27 9 7 45 45 H 1.08995 * 108.15893 * 149.87760 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0433 -1.2291 -0.3143 9 7 1.3851 -2.3538 0.3968 10 6 0.1863 -2.2990 1.2995 11 6 -0.9806 -2.6835 0.5063 12 6 -0.8830 -4.0704 -0.1209 13 6 -0.2326 -3.8592 -1.4574 14 1 -0.3835 -2.8261 -1.7704 15 7 -0.8477 -4.7552 -2.4398 16 6 -0.8355 -4.4311 -3.7480 17 8 -0.3157 -3.3974 -4.1118 18 6 -1.4687 -5.3524 -4.7585 19 6 -1.3185 -4.7542 -6.1587 20 7 -1.9336 -5.6502 -7.1411 21 6 -2.8925 -5.3152 -8.0309 22 6 -3.1860 -6.4201 -8.7562 23 17 -4.3539 -6.5211 -10.0366 24 6 -2.3858 -7.4678 -8.2870 25 7 -1.6350 -7.0072 -7.3192 26 6 1.2861 -4.1522 -1.3827 27 6 1.8644 -3.6322 -0.0430 28 1 -0.4850 0.8401 0.0004 29 1 0.0567 -1.2863 1.6813 30 1 0.3154 -2.9944 2.1289 31 1 -1.1141 -1.9518 -0.2905 32 1 -1.8591 -2.6561 1.1508 33 1 -1.8777 -4.4974 -0.2488 34 1 -0.2691 -4.7245 0.4982 35 1 -1.2636 -5.5818 -2.1488 36 1 -0.9758 -6.3240 -4.7234 37 1 -2.5270 -5.4733 -4.5270 38 1 -1.8117 -3.7828 -6.1935 39 1 -0.2604 -4.6330 -6.3904 40 1 -3.3429 -4.3403 -8.1451 41 1 -2.3872 -8.4814 -8.6596 42 1 1.4505 -5.2273 -1.4542 43 1 1.7911 -3.6556 -2.2112 44 1 2.9483 -3.5732 -0.1410 45 1 1.6381 -4.3647 0.7317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273474149.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:08 Heat of formation + Delta-G solvation = 62.545966 kcal Electronic energy + Delta-G solvation = -27195.756374 eV Core-core repulsion = 23276.842039 eV Total energy + Delta-G solvation = -3918.914335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.59174 -39.75760 -37.79453 -36.71823 -34.81919 -34.34687 -32.34871 -31.59490 -30.98849 -30.12651 -29.27263 -26.25288 -24.99214 -23.94456 -22.82201 -21.54797 -21.21293 -20.43582 -19.70935 -19.13426 -17.91382 -16.74284 -16.60856 -16.06983 -15.75463 -15.13401 -15.03042 -14.75037 -14.52675 -14.28409 -13.80275 -13.65984 -13.55701 -13.30271 -13.15099 -12.71131 -12.43741 -12.25588 -12.04397 -11.85770 -11.76123 -11.56480 -11.45269 -11.25724 -10.78602 -10.77314 -10.63425 -10.41393 -10.26997 -10.07816 -9.92179 -9.78667 -9.54542 -9.49826 -9.37204 -8.74472 -8.63539 -8.37757 -6.71016 -5.77669 -3.16294 1.40243 1.62877 2.25687 2.46166 2.80131 3.41345 3.42325 3.46869 3.48690 4.21888 4.40140 4.51128 4.53460 4.64768 4.88911 5.04523 5.15182 5.24157 5.33733 5.38589 5.44665 5.53235 5.53986 5.70341 5.84872 5.98935 6.01952 6.24180 6.26902 6.38583 6.45271 6.47693 6.67881 6.83594 6.87157 6.91496 6.99410 7.09323 7.19655 7.20038 7.57631 7.74647 7.78045 7.96083 8.44248 8.44643 9.20663 9.88074 10.40250 11.30098 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019151 B = 0.002090 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.742097 B =13392.575681 C =14051.679213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.249 4.249 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.165 3.835 11 C -0.129 4.129 12 C -0.121 4.121 13 C 0.155 3.845 14 H 0.103 0.897 15 N -0.725 5.725 16 C 0.511 3.489 17 O -0.534 6.534 18 C -0.153 4.153 19 C 0.149 3.851 20 N -0.360 5.360 21 C 0.077 3.923 22 C -0.193 4.193 23 Cl -0.046 7.046 24 C 0.062 3.938 25 N -0.281 5.281 26 C -0.151 4.151 27 C 0.161 3.839 28 H 0.253 0.747 29 H 0.091 0.909 30 H 0.006 0.994 31 H 0.103 0.897 32 H 0.029 0.971 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.392 0.608 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.184 0.816 41 H 0.190 0.810 42 H 0.044 0.956 43 H 0.056 0.944 44 H 0.033 0.967 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.834 -14.873 -12.024 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.378 4.378 8 H 0.084 0.916 9 N -0.309 5.309 10 C 0.041 3.959 11 C -0.168 4.168 12 C -0.159 4.159 13 C 0.052 3.948 14 H 0.121 0.879 15 N -0.375 5.375 16 C 0.295 3.705 17 O -0.411 6.411 18 C -0.194 4.194 19 C 0.029 3.971 20 N -0.141 5.141 21 C -0.071 4.071 22 C -0.232 4.232 23 Cl -0.018 7.018 24 C -0.125 4.125 25 N -0.102 5.102 26 C -0.193 4.193 27 C 0.032 3.968 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.024 0.976 31 H 0.121 0.879 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.225 0.775 36 H 0.124 0.876 37 H 0.114 0.886 38 H 0.129 0.871 39 H 0.119 0.881 40 H 0.201 0.799 41 H 0.207 0.793 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.052 0.948 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -7.663 -14.110 -11.385 19.683 hybrid contribution -0.657 0.556 -0.807 1.180 sum -8.320 -13.554 -12.192 20.039 Atomic orbital electron populations 1.69944 1.05073 1.25322 1.54229 1.24884 0.95247 0.98219 1.01150 0.86389 0.78972 0.83544 0.78001 1.21047 1.21762 1.21231 1.19154 0.93641 0.85295 1.39720 0.91556 1.44261 1.33732 1.00891 1.52035 1.20166 0.85252 1.00557 0.89893 1.20929 0.98495 0.94971 1.02406 1.21365 0.98705 0.99793 0.96077 1.21310 0.92132 0.94891 0.86452 0.87861 1.46517 1.58985 1.25168 1.06830 1.20183 0.80110 0.86619 0.83550 1.90790 1.45161 1.25502 1.79608 1.21891 1.03443 1.00933 0.93172 1.21601 1.00507 0.90347 0.84670 1.48667 1.29575 1.08152 1.27735 1.22342 0.92784 1.00054 0.91919 1.20776 1.04751 0.95581 1.02094 1.98327 1.56745 1.98375 1.48371 1.23885 0.94027 0.99990 0.94570 1.77488 1.23054 0.90098 1.19540 1.23303 0.95265 0.98496 1.02238 1.20352 0.96408 0.88225 0.91847 0.93730 0.89130 0.97585 0.87906 0.95190 0.92887 0.91869 0.77481 0.87637 0.88581 0.87144 0.88122 0.79874 0.79270 0.93713 0.92537 0.94826 0.95340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.75 9.43 55.49 0.52 -24.22 16 2 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 21.67 29.60 -169.99 -5.03 16.64 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.25 -6.68 9.63 -15.06 -0.14 -6.83 16 8 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 9 N -0.59 -14.11 2.60 -175.08 -0.46 -14.56 16 10 C 0.16 3.71 5.25 -5.20 -0.03 3.68 16 11 C -0.13 -2.64 5.02 -30.19 -0.15 -2.79 16 12 C -0.12 -2.04 5.33 -28.40 -0.15 -2.19 16 13 C 0.15 2.81 2.23 -68.38 -0.15 2.66 16 14 H 0.10 2.44 6.25 -51.93 -0.32 2.12 16 15 N -0.72 -10.20 4.96 -54.25 -0.27 -10.47 16 16 C 0.51 7.42 7.79 -10.98 -0.09 7.33 16 17 O -0.53 -10.28 15.64 5.55 0.09 -10.20 16 18 C -0.15 -1.55 5.88 -27.88 -0.16 -1.71 16 19 C 0.15 1.50 5.80 -4.04 -0.02 1.47 16 20 N -0.36 -3.62 3.68 -61.33 -0.23 -3.84 16 21 C 0.08 0.68 11.43 -17.16 -0.20 0.48 16 22 C -0.19 -1.76 6.65 -39.97 -0.27 -2.02 16 23 Cl -0.05 -0.38 29.30 -51.86 -1.52 -1.90 16 24 C 0.06 0.57 12.02 -17.33 -0.21 0.36 16 25 N -0.28 -3.09 12.42 30.64 0.38 -2.70 16 26 C -0.15 -2.84 5.99 -24.75 -0.15 -2.99 16 27 C 0.16 3.31 5.17 -4.66 -0.02 3.29 16 28 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.09 2.30 6.05 -51.93 -0.31 1.98 16 30 H 0.01 0.13 8.12 -51.93 -0.42 -0.30 16 31 H 0.10 2.50 5.29 -51.93 -0.27 2.23 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.76 7.86 -51.93 -0.41 0.36 16 34 H 0.06 1.02 6.30 -51.93 -0.33 0.69 16 35 H 0.39 4.17 8.49 -40.82 -0.35 3.82 16 36 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.11 1.02 8.03 -51.93 -0.42 0.60 16 39 H 0.10 1.11 8.10 -51.93 -0.42 0.69 16 40 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.19 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.04 0.73 8.12 -51.93 -0.42 0.31 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.03 0.70 7.99 -51.93 -0.41 0.28 16 45 H 0.03 0.53 6.89 -51.93 -0.36 0.17 16 LS Contribution 374.41 15.07 5.64 5.64 Total: -1.00 -31.01 374.41 -9.23 -40.24 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.53 Total: 4.64 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -1.83 Total: 0.74 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.05 Total: -55.81 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.52 Total: -1.90 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.01 -9.23 -40.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273474149.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.786 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds