Wall clock time and date at job start Sat Apr 11 2020 05:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99796 * 2 1 4 4 H 1.48500 * 109.47490 * 239.99961 * 3 2 1 5 5 H 1.48498 * 109.47532 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46607 * 120.00386 * 3 2 1 7 7 C 1.38812 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99628 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00337 * 0.02562 * 7 2 1 10 10 C 1.46491 * 120.00298 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.52361 * 59.91618 * 10 9 7 12 12 O 1.42901 * 109.47244 * 305.07725 * 11 10 9 13 13 C 1.53070 * 109.38960 * 299.74800 * 10 9 7 14 14 C 1.53039 * 109.65812 * 301.27583 * 13 10 9 15 15 C 1.53191 * 109.31416 * 298.69913 * 14 13 10 16 16 N 1.46928 * 108.77343 * 54.63452 * 15 14 13 17 17 C 1.34783 * 120.62874 * 126.37163 * 16 15 14 18 18 O 1.21274 * 119.99655 * 180.02562 * 17 16 15 19 19 C 1.50698 * 119.99922 * 0.02562 * 17 16 15 20 20 C 1.52999 * 109.47009 * 180.02562 * 19 17 16 21 21 H 1.09001 * 110.54001 * 57.82571 * 20 19 17 22 22 N 1.47317 * 110.59406 * 294.99874 * 20 19 17 23 23 C 1.34526 * 106.61929 * 241.47083 * 22 20 19 24 24 O 1.21539 * 123.77168 * 179.97438 * 23 22 20 25 25 N 1.33795 * 112.45907 * 0.02562 * 23 22 20 26 26 C 1.34763 * 111.64197 * 359.97438 * 25 23 22 27 27 O 1.21235 * 127.15750 * 180.02562 * 26 25 23 28 28 C 1.46919 * 118.73982 * 306.39079 * 16 15 14 29 29 H 0.97003 * 120.00245 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99146 * 359.97438 * 9 7 2 31 31 H 1.08994 * 109.47376 * 65.08673 * 11 10 9 32 32 H 1.09007 * 109.47311 * 185.07993 * 11 10 9 33 33 H 0.96703 * 113.99998 * 179.97438 * 12 11 10 34 34 H 1.09007 * 109.35101 * 181.25336 * 13 10 9 35 35 H 1.09002 * 109.45432 * 61.36491 * 13 10 9 36 36 H 1.09002 * 109.49876 * 178.74890 * 14 13 10 37 37 H 1.09001 * 109.49731 * 58.65147 * 14 13 10 38 38 H 1.08998 * 109.58966 * 294.84519 * 15 14 13 39 39 H 1.08999 * 109.58758 * 174.41876 * 15 14 13 40 40 H 1.09001 * 109.47385 * 300.00399 * 19 17 16 41 41 H 1.08997 * 109.47457 * 60.00250 * 19 17 16 42 42 H 0.97003 * 126.69093 * 61.51334 * 22 20 19 43 43 H 0.96995 * 124.18121 * 179.97438 * 25 23 22 44 44 H 1.09002 * 109.58751 * 173.39743 * 28 16 15 45 45 H 1.08996 * 109.58750 * 293.67928 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6567 -0.0016 11 6 2.9387 -3.7387 1.2468 12 8 3.7868 -2.5902 1.3077 13 6 2.9335 -3.7381 -1.2546 14 6 2.0563 -3.6269 -2.5037 15 6 1.0637 -4.7934 -2.5311 16 7 0.3148 -4.8068 -1.2671 17 6 -1.0330 -4.8052 -1.2674 18 8 -1.6396 -4.8160 -0.2173 19 6 -1.7862 -4.7901 -2.5726 20 6 -3.2905 -4.7907 -2.2934 21 1 -3.5660 -3.9328 -1.6800 22 7 -3.6956 -6.0470 -1.6392 23 6 -4.5725 -6.6456 -2.4653 24 8 -5.1059 -7.7114 -2.2270 25 7 -4.7910 -5.9372 -3.5790 26 6 -4.0736 -4.7964 -3.5912 27 8 -4.0580 -3.9504 -4.4595 28 6 1.0630 -4.8216 -0.0028 29 1 -0.4851 0.8401 0.0004 30 1 0.3556 -2.3880 -0.0016 31 1 2.3078 -3.7721 2.1350 32 1 3.5502 -4.6400 1.2016 33 1 4.3740 -2.5752 2.0759 34 1 3.4612 -4.6918 -1.2652 35 1 3.6572 -2.9230 -1.2453 36 1 2.6845 -3.6628 -3.3938 37 1 1.5095 -2.6843 -2.4815 38 1 1.6059 -5.7321 -2.6446 39 1 0.3723 -4.6653 -3.3640 40 1 -1.5217 -3.8943 -3.1344 41 1 -1.5239 -5.6741 -3.1538 42 1 -3.3901 -6.3778 -0.7800 43 1 -5.3915 -6.2108 -4.2899 44 1 0.3713 -4.7123 0.8325 45 1 1.6032 -5.7636 0.0911 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273886681.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:11 Heat of formation + Delta-G solvation = -103.697009 kcal Electronic energy + Delta-G solvation = -31432.757609 eV Core-core repulsion = 27065.925272 eV Total energy + Delta-G solvation = -4366.832336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.55813 -40.15781 -38.79840 -38.07048 -36.36343 -35.82895 -34.20654 -33.90566 -32.19070 -31.49439 -30.87198 -28.72878 -26.45195 -25.48254 -24.50279 -23.48960 -22.88589 -21.88783 -21.65349 -19.50740 -18.58260 -18.31293 -17.44673 -17.25665 -16.94727 -16.81038 -16.33476 -15.97566 -15.71650 -15.49423 -15.09909 -14.90470 -14.35058 -14.27035 -14.18554 -13.88279 -13.56318 -13.38707 -13.24007 -13.05093 -12.84773 -12.39214 -12.05550 -12.02037 -11.83634 -11.30383 -11.24770 -10.78862 -10.76359 -10.61559 -10.51813 -10.48847 -10.41082 -10.15262 -9.95764 -9.71222 -9.65147 -9.52533 -9.01653 -8.77812 -8.39506 -6.88781 -5.62670 -2.89778 1.35085 2.24070 2.68095 2.79406 2.89604 3.14854 3.50693 3.55935 3.56766 3.78606 4.30745 4.56486 4.67285 4.68672 4.83783 5.00819 5.15964 5.26188 5.28809 5.35809 5.42442 5.46833 5.57674 5.67799 5.73446 5.78794 5.81530 5.86244 5.98699 6.04257 6.06082 6.27074 6.45360 6.62738 6.67137 6.71911 6.74052 6.91452 7.02419 7.15906 7.52430 7.96959 8.07867 8.23466 8.32858 8.55478 9.67517 10.17723 10.54339 11.60055 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013982 B = 0.003501 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.095918 B = 7995.278559 C = 8940.560357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.023 4.023 3 Si 0.903 3.097 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.289 1.289 7 C -0.206 4.206 8 H 0.091 0.909 9 N -0.704 5.704 10 C 0.188 3.812 11 C 0.074 3.926 12 O -0.535 6.535 13 C -0.117 4.117 14 C -0.130 4.130 15 C 0.108 3.892 16 N -0.592 5.592 17 C 0.525 3.475 18 O -0.541 6.541 19 C -0.141 4.141 20 C 0.109 3.891 21 H 0.143 0.857 22 N -0.707 5.707 23 C 0.701 3.299 24 O -0.551 6.551 25 N -0.681 5.681 26 C 0.530 3.470 27 O -0.461 6.461 28 C 0.115 3.885 29 H 0.251 0.749 30 H 0.383 0.617 31 H 0.036 0.964 32 H 0.023 0.977 33 H 0.351 0.649 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.124 0.876 41 H 0.101 0.899 42 H 0.448 0.552 43 H 0.432 0.568 44 H 0.095 0.905 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.601 -14.378 -6.155 15.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.217 4.217 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.217 1.217 7 C -0.338 4.338 8 H 0.109 0.891 9 N -0.344 5.344 10 C 0.095 3.905 11 C -0.007 4.007 12 O -0.337 6.337 13 C -0.157 4.157 14 C -0.168 4.168 15 C -0.015 4.015 16 N -0.324 5.324 17 C 0.313 3.687 18 O -0.419 6.419 19 C -0.182 4.182 20 C -0.001 4.001 21 H 0.160 0.840 22 N -0.373 5.373 23 C 0.400 3.600 24 O -0.425 6.425 25 N -0.352 5.352 26 C 0.315 3.685 27 O -0.329 6.329 28 C -0.007 4.007 29 H 0.061 0.939 30 H 0.218 0.782 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.196 0.804 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.142 0.858 41 H 0.120 0.880 42 H 0.294 0.706 43 H 0.274 0.726 44 H 0.113 0.887 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.351 -14.138 -6.450 15.598 hybrid contribution 0.468 0.695 0.582 1.020 sum -0.883 -13.442 -5.869 14.694 Atomic orbital electron populations 1.69659 1.04972 1.25255 1.59164 1.24723 0.95349 0.97419 1.04227 0.86318 0.78354 0.84136 0.77616 1.21714 1.22260 1.21656 1.19485 0.91816 0.83050 1.39404 0.89105 1.42376 1.05319 0.99119 1.87575 1.19953 0.90448 0.87693 0.92405 1.22704 0.92133 0.86768 0.99118 1.86928 1.54727 1.43696 1.48356 1.21883 0.98375 1.00359 0.95108 1.21816 0.97656 0.99435 0.97861 1.21830 0.95225 0.99348 0.85095 1.47803 1.04941 1.72017 1.07646 1.20054 0.82223 0.76070 0.90397 1.90690 1.67456 1.50601 1.33197 1.21886 0.91716 1.06457 0.98142 1.21826 0.94806 0.91175 0.92295 0.84009 1.45689 1.46031 1.22266 1.23333 1.15927 0.80435 0.83376 0.80250 1.91047 1.54415 1.20646 1.76409 1.44322 1.45292 1.22943 1.22663 1.20769 0.79303 0.80616 0.87820 1.90878 1.62901 1.38833 1.40277 1.21724 0.94872 0.97568 0.86570 0.93921 0.78244 0.94579 0.95872 0.80408 0.94068 0.90693 0.92064 0.89122 0.91788 0.90367 0.85769 0.88040 0.70567 0.72640 0.88677 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.95 13.06 55.49 0.72 -27.23 16 2 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 3 Si 0.90 22.56 29.55 -169.99 -5.02 17.54 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.21 -5.37 8.13 -15.06 -0.12 -5.50 16 8 H 0.09 2.38 5.29 -52.49 -0.28 2.10 16 9 N -0.70 -16.08 4.23 -47.11 -0.20 -16.28 16 10 C 0.19 3.29 0.69 -131.69 -0.09 3.20 16 11 C 0.07 1.22 6.10 37.16 0.23 1.44 16 12 O -0.53 -9.67 9.92 -35.23 -0.35 -10.02 16 13 C -0.12 -1.87 4.42 -26.67 -0.12 -1.98 16 14 C -0.13 -1.87 5.93 -26.61 -0.16 -2.03 16 15 C 0.11 1.23 6.34 -3.71 -0.02 1.21 16 16 N -0.59 -8.08 2.88 -172.77 -0.50 -8.58 16 17 C 0.53 7.25 7.58 -10.98 -0.08 7.17 16 18 O -0.54 -8.93 14.26 5.56 0.08 -8.85 16 19 C -0.14 -1.45 3.82 -27.88 -0.11 -1.56 16 20 C 0.11 1.13 3.19 -68.20 -0.22 0.91 16 21 H 0.14 1.59 8.07 -51.93 -0.42 1.17 16 22 N -0.71 -7.37 5.85 -59.19 -0.35 -7.72 16 23 C 0.70 7.83 8.99 -88.02 -0.79 7.04 16 24 O -0.55 -7.98 18.04 5.33 0.10 -7.89 16 25 N -0.68 -6.09 5.70 -15.79 -0.09 -6.18 16 26 C 0.53 5.45 8.14 -10.56 -0.09 5.37 16 27 O -0.46 -5.97 18.02 5.60 0.10 -5.87 16 28 C 0.12 1.73 5.14 -3.71 -0.02 1.71 16 29 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.38 9.80 7.65 -40.82 -0.31 9.48 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.35 4.69 9.12 45.56 0.42 5.11 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 1.40 6.98 -51.93 -0.36 1.04 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.69 7.54 -51.93 -0.39 1.30 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.73 5.93 -51.93 -0.31 0.42 16 40 H 0.12 1.28 7.69 -51.93 -0.40 0.88 16 41 H 0.10 0.81 7.94 -51.93 -0.41 0.40 16 42 H 0.45 4.81 8.01 -40.82 -0.33 4.48 16 43 H 0.43 2.91 8.96 -40.82 -0.37 2.54 16 44 H 0.09 1.61 7.00 -51.93 -0.36 1.25 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 364.18 15.07 5.49 5.49 Total: -1.00 -34.81 364.18 -6.90 -41.71 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -5.20 Total: 17.64 kcal Atomic # 6 Polarization: 17.92 SS G_CDS: -1.69 Total: 16.23 kcal Atomic # 7 Polarization: -65.58 SS G_CDS: -0.41 Total: -65.99 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -0.07 Total: -32.62 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.81 -6.90 -41.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273886681.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.989 kcal (2) G-P(sol) polarization free energy of solvation -34.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds