Wall clock time and date at job start Sat Apr 11 2020 05:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99796 * 2 1 4 4 H 1.48500 * 109.47490 * 239.99961 * 3 2 1 5 5 H 1.48498 * 109.47532 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46607 * 120.00386 * 3 2 1 7 7 C 1.38812 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99628 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00337 * 0.02562 * 7 2 1 10 10 C 1.46491 * 120.00298 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.52361 * 59.91618 * 10 9 7 12 12 O 1.42901 * 109.47244 * 305.07725 * 11 10 9 13 13 C 1.53070 * 109.38960 * 299.74800 * 10 9 7 14 14 C 1.53039 * 109.65812 * 301.27583 * 13 10 9 15 15 C 1.53191 * 109.31416 * 298.69913 * 14 13 10 16 16 N 1.46928 * 108.77343 * 54.63452 * 15 14 13 17 17 C 1.34783 * 120.62874 * 126.37163 * 16 15 14 18 18 O 1.21274 * 119.99655 * 180.02562 * 17 16 15 19 19 C 1.50698 * 119.99922 * 0.02562 * 17 16 15 20 20 C 1.52999 * 109.47009 * 180.02562 * 19 17 16 21 21 H 1.09001 * 110.54001 * 57.82571 * 20 19 17 22 22 N 1.47317 * 110.59406 * 294.99874 * 20 19 17 23 23 C 1.34526 * 106.61929 * 241.47083 * 22 20 19 24 24 O 1.21539 * 123.77168 * 179.97438 * 23 22 20 25 25 N 1.33795 * 112.45907 * 0.02562 * 23 22 20 26 26 C 1.34763 * 111.64197 * 359.97438 * 25 23 22 27 27 O 1.21235 * 127.15750 * 180.02562 * 26 25 23 28 28 C 1.46919 * 118.73982 * 306.39079 * 16 15 14 29 29 H 0.97003 * 120.00245 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99146 * 359.97438 * 9 7 2 31 31 H 1.08994 * 109.47376 * 65.08673 * 11 10 9 32 32 H 1.09007 * 109.47311 * 185.07993 * 11 10 9 33 33 H 0.96703 * 113.99998 * 179.97438 * 12 11 10 34 34 H 1.09007 * 109.35101 * 181.25336 * 13 10 9 35 35 H 1.09002 * 109.45432 * 61.36491 * 13 10 9 36 36 H 1.09002 * 109.49876 * 178.74890 * 14 13 10 37 37 H 1.09001 * 109.49731 * 58.65147 * 14 13 10 38 38 H 1.08998 * 109.58966 * 294.84519 * 15 14 13 39 39 H 1.08999 * 109.58758 * 174.41876 * 15 14 13 40 40 H 1.09001 * 109.47385 * 300.00399 * 19 17 16 41 41 H 1.08997 * 109.47457 * 60.00250 * 19 17 16 42 42 H 0.97003 * 126.69093 * 61.51334 * 22 20 19 43 43 H 0.96995 * 124.18121 * 179.97438 * 25 23 22 44 44 H 1.09002 * 109.58751 * 173.39743 * 28 16 15 45 45 H 1.08996 * 109.58750 * 293.67928 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6567 -0.0016 11 6 2.9387 -3.7387 1.2468 12 8 3.7868 -2.5902 1.3077 13 6 2.9335 -3.7381 -1.2546 14 6 2.0563 -3.6269 -2.5037 15 6 1.0637 -4.7934 -2.5311 16 7 0.3148 -4.8068 -1.2671 17 6 -1.0330 -4.8052 -1.2674 18 8 -1.6396 -4.8160 -0.2173 19 6 -1.7862 -4.7901 -2.5726 20 6 -3.2905 -4.7907 -2.2934 21 1 -3.5660 -3.9328 -1.6800 22 7 -3.6956 -6.0470 -1.6392 23 6 -4.5725 -6.6456 -2.4653 24 8 -5.1059 -7.7114 -2.2270 25 7 -4.7910 -5.9372 -3.5790 26 6 -4.0736 -4.7964 -3.5912 27 8 -4.0580 -3.9504 -4.4595 28 6 1.0630 -4.8216 -0.0028 29 1 -0.4851 0.8401 0.0004 30 1 0.3556 -2.3880 -0.0016 31 1 2.3078 -3.7721 2.1350 32 1 3.5502 -4.6400 1.2016 33 1 4.3740 -2.5752 2.0759 34 1 3.4612 -4.6918 -1.2652 35 1 3.6572 -2.9230 -1.2453 36 1 2.6845 -3.6628 -3.3938 37 1 1.5095 -2.6843 -2.4815 38 1 1.6059 -5.7321 -2.6446 39 1 0.3723 -4.6653 -3.3640 40 1 -1.5217 -3.8943 -3.1344 41 1 -1.5239 -5.6741 -3.1538 42 1 -3.3901 -6.3778 -0.7800 43 1 -5.3915 -6.2108 -4.2899 44 1 0.3713 -4.7123 0.8325 45 1 1.6032 -5.7636 0.0911 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273886681.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:10 Heat of formation + Delta-G solvation = -135.253905 kcal Electronic energy + Delta-G solvation = -31434.126018 eV Core-core repulsion = 27065.925272 eV Total energy + Delta-G solvation = -4368.200746 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.45212 -41.28421 -39.76029 -39.33629 -37.38548 -37.05753 -35.51190 -35.06287 -33.79538 -32.66583 -31.95284 -30.42939 -27.50520 -26.63182 -25.76413 -25.26198 -23.76254 -23.04293 -22.55199 -20.68579 -19.72770 -19.34034 -19.14132 -18.30336 -17.94720 -17.83835 -17.66558 -16.89380 -16.76304 -16.67900 -16.34029 -16.10681 -15.77489 -15.45979 -15.33296 -15.29968 -14.85851 -14.75062 -14.50788 -14.11723 -14.00341 -13.59807 -13.42950 -13.23500 -12.90564 -12.78446 -12.66102 -12.59603 -12.22796 -12.01309 -11.75888 -11.66755 -11.52064 -11.47052 -11.44994 -11.22694 -10.85242 -10.64844 -10.55673 -10.50923 -9.49794 -8.81527 -7.74151 -4.97475 0.45938 1.39609 1.49487 1.51079 1.56695 1.63282 1.89044 1.97147 2.19265 2.68446 2.90008 3.42939 3.47150 3.61992 3.73449 3.84335 3.89795 4.05259 4.20462 4.30574 4.31507 4.44804 4.48051 4.54212 4.59794 4.61964 4.68650 4.72589 4.86350 4.94510 5.05410 5.06973 5.09330 5.36020 5.58245 5.62824 5.73890 5.75439 5.86292 5.97514 6.31867 6.46950 6.50222 7.08912 7.16284 7.19828 7.56130 8.27739 8.50550 9.49776 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013982 B = 0.003501 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.095918 B = 7995.278559 C = 8940.560357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.093 4.093 3 Si 0.954 3.046 4 H -0.284 1.284 5 H -0.308 1.308 6 H -0.288 1.288 7 C -0.173 4.173 8 H 0.092 0.908 9 N -0.712 5.712 10 C 0.175 3.825 11 C 0.074 3.926 12 O -0.565 6.565 13 C -0.111 4.111 14 C -0.127 4.127 15 C 0.109 3.891 16 N -0.596 5.596 17 C 0.517 3.483 18 O -0.575 6.575 19 C -0.132 4.132 20 C 0.110 3.890 21 H 0.132 0.868 22 N -0.700 5.700 23 C 0.707 3.293 24 O -0.582 6.582 25 N -0.664 5.664 26 C 0.545 3.455 27 O -0.484 6.484 28 C 0.121 3.879 29 H 0.239 0.761 30 H 0.366 0.634 31 H 0.024 0.976 32 H 0.066 0.934 33 H 0.373 0.627 34 H 0.079 0.921 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.040 0.960 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.127 0.873 41 H 0.134 0.866 42 H 0.447 0.553 43 H 0.443 0.557 44 H 0.068 0.932 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.999 -16.818 -7.453 18.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.283 4.283 3 Si 0.787 3.213 4 H -0.211 1.211 5 H -0.236 1.236 6 H -0.215 1.215 7 C -0.306 4.306 8 H 0.110 0.890 9 N -0.351 5.351 10 C 0.084 3.916 11 C -0.007 4.007 12 O -0.371 6.371 13 C -0.150 4.150 14 C -0.166 4.166 15 C -0.013 4.013 16 N -0.327 5.327 17 C 0.306 3.694 18 O -0.456 6.456 19 C -0.173 4.173 20 C 0.000 4.000 21 H 0.149 0.851 22 N -0.365 5.365 23 C 0.406 3.594 24 O -0.459 6.459 25 N -0.335 5.335 26 C 0.331 3.669 27 O -0.354 6.354 28 C -0.002 4.002 29 H 0.048 0.952 30 H 0.198 0.802 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.220 0.780 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.059 0.941 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.145 0.855 41 H 0.152 0.848 42 H 0.294 0.706 43 H 0.288 0.712 44 H 0.087 0.913 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.326 -16.622 -7.766 18.349 hybrid contribution 0.086 1.348 1.038 1.704 sum 0.412 -15.274 -6.727 16.695 Atomic orbital electron populations 1.69813 1.06200 1.24681 1.62731 1.25314 0.95970 1.00129 1.06851 0.85461 0.77018 0.81150 0.77660 1.21121 1.23562 1.21499 1.19727 0.91844 0.84095 1.34883 0.89037 1.42509 1.04634 1.00460 1.87451 1.20405 0.91260 0.86214 0.93770 1.22660 0.92349 0.87904 0.97770 1.86804 1.55464 1.44920 1.49881 1.21776 0.97621 1.01015 0.94613 1.21751 0.98061 0.98474 0.98266 1.22030 0.95114 0.99472 0.84635 1.47934 1.05089 1.71628 1.08034 1.20636 0.82415 0.75258 0.91129 1.90678 1.68138 1.52032 1.34716 1.21870 0.90794 1.08074 0.96541 1.21775 0.95248 0.90742 0.92237 0.85060 1.45652 1.45631 1.21994 1.23186 1.15895 0.80055 0.82922 0.80480 1.91035 1.55601 1.22126 1.77120 1.44108 1.44963 1.22095 1.22360 1.20524 0.78937 0.80335 0.87150 1.90883 1.63745 1.39639 1.41093 1.21618 0.94040 0.97918 0.86672 0.95236 0.80230 0.95765 0.91589 0.77969 0.90281 0.93947 0.89628 0.94130 0.88088 0.88081 0.85509 0.84756 0.70639 0.71201 0.91322 0.87792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.59 13.06 21.65 0.28 -60.31 16 2 C -0.09 -5.33 5.50 84.86 0.47 -4.87 16 3 Si 0.95 47.63 29.55 68.60 2.03 49.66 16 4 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 5 H -0.31 -15.87 7.11 99.48 0.71 -15.16 16 6 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 7 C -0.17 -9.13 8.13 84.03 0.68 -8.45 16 8 H 0.09 4.80 5.29 -2.91 -0.02 4.79 16 9 N -0.71 -32.90 4.23 -302.96 -1.28 -34.18 16 10 C 0.17 5.82 0.69 3.69 0.00 5.82 16 11 C 0.07 2.26 6.10 71.98 0.44 2.70 16 12 O -0.57 -19.63 9.92 -148.98 -1.48 -21.11 16 13 C -0.11 -3.22 4.42 30.63 0.14 -3.09 16 14 C -0.13 -3.36 5.93 30.67 0.18 -3.18 16 15 C 0.11 2.06 6.34 86.36 0.55 2.60 16 16 N -0.60 -14.87 2.88 -818.92 -2.36 -17.22 16 17 C 0.52 13.61 7.58 87.66 0.66 14.28 16 18 O -0.58 -18.99 14.26 -3.01 -0.04 -19.03 16 19 C -0.13 -2.46 3.82 29.85 0.11 -2.34 16 20 C 0.11 2.16 3.19 44.37 0.14 2.31 16 21 H 0.13 2.96 8.07 -2.39 -0.02 2.94 16 22 N -0.70 -13.83 5.85 -459.60 -2.69 -16.52 16 23 C 0.71 14.84 8.99 179.44 1.61 16.45 16 24 O -0.58 -16.27 18.04 -3.84 -0.07 -16.34 16 25 N -0.66 -10.75 5.70 -441.12 -2.52 -13.27 16 26 C 0.54 10.39 8.14 87.94 0.72 11.11 16 27 O -0.48 -11.91 18.02 -2.89 -0.05 -11.96 16 28 C 0.12 3.35 5.14 86.36 0.44 3.79 16 29 H 0.24 14.75 8.31 -92.71 -0.77 13.98 16 30 H 0.37 19.30 7.65 -92.71 -0.71 18.59 16 31 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.37 9.32 9.12 -74.06 -0.68 8.64 16 34 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.04 1.51 6.98 -2.39 -0.02 1.49 16 36 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.04 1.49 7.54 -2.39 -0.02 1.47 16 38 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.10 1.47 5.93 -2.39 -0.01 1.46 16 40 H 0.13 2.39 7.69 -2.39 -0.02 2.37 16 41 H 0.13 1.62 7.94 -2.39 -0.02 1.60 16 42 H 0.45 9.30 8.01 -92.71 -0.74 8.56 16 43 H 0.44 5.16 8.96 -92.71 -0.83 4.33 16 44 H 0.07 2.30 7.00 -2.39 -0.02 2.28 16 45 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -79.13 364.18 -3.88 -83.02 By element: Atomic # 1 Polarization: 42.00 SS G_CDS: -1.86 Total: 40.13 kcal Atomic # 6 Polarization: 30.98 SS G_CDS: 6.15 Total: 37.13 kcal Atomic # 7 Polarization: -132.94 SS G_CDS: -8.56 Total: -141.50 kcal Atomic # 8 Polarization: -66.80 SS G_CDS: -1.64 Total: -68.44 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -79.13 -3.88 -83.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273886681.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.236 kcal (2) G-P(sol) polarization free energy of solvation -79.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds