Wall clock time and date at job start Sat Apr 11 2020 05:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46493 * 109.46027 * 2 1 4 4 C 1.36935 * 120.00521 * 299.97374 * 3 2 1 5 5 H 1.08000 * 119.99798 * 0.02562 * 4 3 2 6 6 C 1.38807 * 120.00199 * 179.97438 * 4 3 2 7 7 N 1.31628 * 119.99930 * 180.02562 * 6 4 3 8 8 Si 1.86795 * 120.00156 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.47323 * 90.00139 * 8 6 4 10 10 H 1.48506 * 109.47234 * 209.99913 * 8 6 4 11 11 H 1.48498 * 109.47356 * 330.00139 * 8 6 4 12 12 C 1.53039 * 109.45951 * 119.97663 * 2 1 3 13 13 C 1.53196 * 109.33748 * 181.36946 * 12 2 1 14 14 N 1.46931 * 108.77131 * 305.41286 * 13 12 2 15 15 C 1.34775 * 120.60689 * 233.57988 * 14 13 12 16 16 O 1.21283 * 120.00376 * 179.97438 * 15 14 13 17 17 C 1.50706 * 119.99836 * 359.97438 * 15 14 13 18 18 C 1.53005 * 109.47219 * 180.02562 * 17 15 14 19 19 N 1.46497 * 109.46866 * 180.02562 * 18 17 15 20 20 C 1.35046 * 126.03747 * 125.00273 * 19 18 17 21 21 C 1.35371 * 107.72841 * 179.97438 * 20 19 18 22 22 Cl 1.73601 * 126.04597 * 179.97438 * 21 20 19 23 23 C 1.39928 * 107.90863 * 0.02562 * 21 20 19 24 24 N 1.30849 * 108.21321 * 359.75452 * 23 21 20 25 25 C 1.46928 * 118.76737 * 53.55408 * 14 13 12 26 26 C 1.53045 * 109.45848 * 240.04215 * 2 1 3 27 27 H 1.08993 * 109.46896 * 300.02595 * 1 2 3 28 28 H 1.09000 * 109.46705 * 60.02602 * 1 2 3 29 29 H 1.09000 * 109.47060 * 180.02562 * 1 2 3 30 30 H 0.97002 * 120.00131 * 119.97438 * 3 2 1 31 31 H 0.97000 * 119.99990 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.49756 * 301.33670 * 12 2 1 33 33 H 1.09000 * 109.49883 * 61.40413 * 12 2 1 34 34 H 1.08996 * 109.58760 * 65.17188 * 13 12 2 35 35 H 1.09001 * 109.58519 * 185.59185 * 13 12 2 36 36 H 1.09005 * 109.47141 * 300.00250 * 17 15 14 37 37 H 1.09005 * 109.46868 * 60.00194 * 17 15 14 38 38 H 1.08999 * 109.46866 * 299.99779 * 18 17 15 39 39 H 1.09002 * 109.46852 * 59.99804 * 18 17 15 40 40 H 1.07997 * 126.13482 * 359.93786 * 20 19 18 41 41 H 1.07999 * 125.89199 * 179.97438 * 23 21 20 42 42 H 1.08997 * 109.58597 * 186.62384 * 25 14 13 43 43 H 1.09004 * 109.58075 * 66.20134 * 25 14 13 44 44 H 1.08993 * 109.49877 * 298.56751 * 26 2 1 45 45 H 1.09003 * 109.49434 * 58.63248 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3812 0.0000 4 6 1.6876 2.2243 -1.0272 5 1 1.0668 1.8710 -1.8373 6 6 2.1497 3.5332 -1.0269 7 7 1.8316 4.3437 -2.0141 8 14 3.2217 4.1449 0.3752 9 1 4.6500 3.9034 0.0481 10 1 2.9980 5.5999 0.5709 11 1 2.8695 3.4179 1.6212 12 6 2.0399 -0.7210 1.2499 13 6 3.5715 -0.6895 1.2645 14 7 4.0679 -1.2488 -0.0002 15 6 4.9617 -2.2575 -0.0005 16 8 5.3639 -2.7113 -1.0509 17 6 5.4616 -2.8217 1.3046 18 6 6.4597 -3.9471 1.0248 19 7 6.9450 -4.4958 2.2934 20 6 6.8990 -5.7926 2.6676 21 6 7.4457 -5.8850 3.9025 22 17 7.6263 -7.3391 4.8335 23 6 7.8386 -4.6010 4.2963 24 7 7.5434 -3.7688 3.3306 25 6 3.5714 -0.6884 -1.2644 26 6 2.0399 -0.7206 -1.2502 27 1 -0.3633 0.5142 0.8897 28 1 -0.3633 0.5134 -0.8902 29 1 -0.3633 -1.0277 0.0005 30 1 2.5754 1.6987 0.7277 31 1 2.1541 5.2585 -2.0137 32 1 1.6572 -0.2211 2.1398 33 1 1.6974 -1.7557 1.2383 34 1 3.9148 0.3398 1.3681 35 1 3.9413 -1.2859 2.0986 36 1 5.9530 -2.0344 1.8763 37 1 4.6208 -3.2149 1.8761 38 1 5.9685 -4.7344 0.4530 39 1 7.3003 -3.5534 0.4534 40 1 6.4974 -6.6093 2.0861 41 1 8.3079 -4.3422 5.2339 42 1 3.9417 -1.2842 -2.0987 43 1 3.9144 0.3411 -1.3673 44 1 1.6978 -1.7554 -1.2386 45 1 1.6567 -0.2207 -2.1399 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274398652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:17 Heat of formation + Delta-G solvation = 33.751431 kcal Electronic energy + Delta-G solvation = -27494.882654 eV Core-core repulsion = 23574.719694 eV Total energy + Delta-G solvation = -3920.162960 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.28585 -41.37995 -39.42543 -37.35560 -36.15566 -35.34386 -34.20481 -32.44236 -31.68458 -31.41813 -30.39044 -29.06754 -25.94314 -25.63069 -24.18329 -23.78960 -22.20148 -21.90737 -20.76256 -19.79602 -19.45099 -18.74054 -17.64232 -17.15885 -16.93691 -16.42257 -16.16475 -15.95291 -15.54542 -15.37393 -15.17020 -15.02245 -14.80685 -14.42435 -14.34004 -14.25157 -13.98958 -13.73402 -13.63707 -13.25682 -12.95748 -12.74822 -12.73795 -12.63536 -12.56443 -12.43479 -12.26156 -12.12986 -12.00379 -11.75296 -11.64026 -11.43467 -11.27029 -10.91085 -10.83038 -10.58875 -9.69533 -9.41883 -9.20377 -7.94997 -5.26415 0.73766 0.95652 1.36808 1.40433 1.47684 1.54360 1.60300 1.75806 2.05686 2.52182 3.35661 3.37884 3.51325 3.56538 3.77452 3.83507 3.85906 4.00086 4.06792 4.14365 4.23860 4.29467 4.38346 4.43987 4.57593 4.59715 4.61994 4.69408 4.78248 4.80173 4.90831 4.96278 5.02636 5.07456 5.15443 5.27587 5.32425 5.37912 5.57540 5.60936 5.82137 5.88685 6.29499 6.42810 6.52586 7.07522 7.16415 7.92951 8.10701 9.26833 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019043 B = 0.002317 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.041754 B =12083.710158 C =12408.267301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.192 3.808 3 N -0.741 5.741 4 C -0.200 4.200 5 H 0.060 0.940 6 C -0.070 4.070 7 N -0.989 5.989 8 Si 0.943 3.057 9 H -0.288 1.288 10 H -0.306 1.306 11 H -0.245 1.245 12 C -0.126 4.126 13 C 0.105 3.895 14 N -0.599 5.599 15 C 0.518 3.482 16 O -0.584 6.584 17 C -0.139 4.139 18 C 0.154 3.846 19 N -0.366 5.366 20 C 0.082 3.918 21 C -0.205 4.205 22 Cl -0.042 7.042 23 C 0.062 3.938 24 N -0.313 5.313 25 C 0.128 3.872 26 C -0.125 4.125 27 H 0.051 0.949 28 H 0.028 0.972 29 H 0.070 0.930 30 H 0.363 0.637 31 H 0.252 0.748 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.086 0.914 40 H 0.212 0.788 41 H 0.209 0.791 42 H 0.073 0.927 43 H 0.050 0.950 44 H 0.074 0.926 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.377 -24.389 15.411 30.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.103 3.897 3 N -0.385 5.385 4 C -0.331 4.331 5 H 0.078 0.922 6 C -0.260 4.260 7 N -0.641 5.641 8 Si 0.772 3.228 9 H -0.215 1.215 10 H -0.233 1.233 11 H -0.169 1.169 12 C -0.164 4.164 13 C -0.017 4.017 14 N -0.331 5.331 15 C 0.307 3.693 16 O -0.465 6.465 17 C -0.179 4.179 18 C 0.033 3.967 19 N -0.148 5.148 20 C -0.066 4.066 21 C -0.243 4.243 22 Cl -0.014 7.014 23 C -0.124 4.124 24 N -0.134 5.134 25 C 0.005 3.995 26 C -0.165 4.165 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.198 0.802 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.136 0.864 36 H 0.128 0.872 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.104 0.896 40 H 0.228 0.772 41 H 0.225 0.775 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.093 0.907 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.472 -23.397 14.238 28.669 hybrid contribution 0.488 0.504 0.383 0.799 sum 8.959 -22.893 14.620 28.602 Atomic orbital electron populations 1.22116 0.96396 1.00926 1.00918 1.19851 0.92844 0.83146 0.93897 1.42881 1.61534 1.08934 1.25128 1.18863 1.23282 0.91451 0.99497 0.92220 1.25386 1.03258 0.97042 1.00362 1.69880 1.52536 1.06577 1.35074 0.85582 0.78926 0.77031 0.81254 1.21475 1.23324 1.16898 1.22113 0.94526 1.02094 0.97663 1.21933 0.94952 0.99554 0.85301 1.48147 1.42478 1.34477 1.08005 1.20780 0.78196 0.78995 0.91318 1.90690 1.59232 1.61500 1.35108 1.21824 1.01126 0.99865 0.95098 1.21524 0.97868 0.97907 0.79383 1.48626 1.45919 1.05310 1.14942 1.22798 0.99508 0.88608 0.95652 1.20916 1.17183 0.89750 0.96484 1.98332 1.97049 1.34027 1.72003 1.24288 0.99188 0.89463 0.99509 1.77478 1.17743 1.20909 0.97253 1.21277 0.94645 0.97698 0.85882 1.22170 0.94407 1.00107 0.99781 0.93034 0.95304 0.91065 0.80245 0.93897 0.89089 0.88553 0.92402 0.86376 0.87191 0.85886 0.85678 0.89583 0.77153 0.77463 0.90900 0.93185 0.90716 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 8.44 71.98 0.61 -3.87 16 2 C 0.19 6.04 0.74 3.63 0.00 6.05 16 3 N -0.74 -30.21 3.94 -303.23 -1.19 -31.40 16 4 C -0.20 -10.46 9.16 84.03 0.77 -9.69 16 5 H 0.06 3.48 6.93 -2.91 -0.02 3.46 16 6 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 7 N -0.99 -62.46 13.97 21.65 0.30 -62.15 16 8 Si 0.94 44.10 27.73 68.60 1.90 46.00 16 9 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 10 H -0.31 -14.93 7.11 99.48 0.71 -14.23 16 11 H -0.24 -9.94 6.52 99.48 0.65 -9.29 16 12 C -0.13 -2.75 4.96 30.67 0.15 -2.59 16 13 C 0.10 2.24 6.07 86.36 0.52 2.76 16 14 N -0.60 -15.64 2.97 -818.88 -2.43 -18.07 16 15 C 0.52 12.54 7.70 87.66 0.67 13.21 16 16 O -0.58 -18.14 15.40 -3.04 -0.05 -18.19 16 17 C -0.14 -2.17 4.24 29.85 0.13 -2.05 16 18 C 0.15 2.29 5.80 86.38 0.50 2.79 16 19 N -0.37 -5.72 3.68 -347.94 -1.28 -7.00 16 20 C 0.08 1.03 11.43 83.54 0.95 1.99 16 21 C -0.20 -2.94 6.65 22.02 0.15 -2.80 16 22 Cl -0.04 -0.56 29.30 -2.72 -0.08 -0.64 16 23 C 0.06 0.95 12.02 85.25 1.02 1.98 16 24 N -0.31 -5.91 12.42 -56.98 -0.71 -6.61 16 25 C 0.13 4.24 6.18 86.36 0.53 4.77 16 26 C -0.12 -4.01 4.71 30.67 0.14 -3.87 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.03 1.06 7.27 -2.39 -0.02 1.05 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.36 14.35 4.33 -92.71 -0.40 13.95 16 31 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 32 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.06 1.45 6.94 -2.39 -0.02 1.44 16 35 H 0.12 1.63 5.93 -2.39 -0.01 1.62 16 36 H 0.11 1.77 7.94 -2.38 -0.02 1.75 16 37 H 0.12 1.39 7.69 -2.38 -0.02 1.37 16 38 H 0.13 1.45 8.03 -2.39 -0.02 1.43 16 39 H 0.09 1.52 8.10 -2.39 -0.02 1.50 16 40 H 0.21 1.24 8.06 -2.91 -0.02 1.22 16 41 H 0.21 2.11 8.06 -2.91 -0.02 2.09 16 42 H 0.07 2.51 7.00 -2.39 -0.02 2.49 16 43 H 0.05 2.00 7.74 -2.39 -0.02 1.98 16 44 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.05 1.90 7.31 -2.39 -0.02 1.88 16 Total: -1.00 -72.19 374.08 3.64 -68.55 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.55 Total: 24.34 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 6.63 Total: 5.18 kcal Atomic # 7 Polarization: -119.93 SS G_CDS: -5.31 Total: -125.24 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.05 Total: -18.19 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.90 Total: 46.00 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -0.08 Total: -0.64 kcal Total: -72.19 3.64 -68.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274398652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.303 kcal (2) G-P(sol) polarization free energy of solvation -72.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds