Wall clock time and date at job start Sat Apr 11 2020 05:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99568 * 2 1 4 4 H 1.48509 * 109.46992 * 269.99962 * 3 2 1 5 5 H 1.48496 * 109.47332 * 29.99632 * 3 2 1 6 6 H 1.48503 * 109.47367 * 150.00361 * 3 2 1 7 7 C 1.38807 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00366 * 359.97438 * 7 2 1 9 9 N 1.36940 * 119.99774 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99891 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47018 * 179.97438 * 10 9 7 12 12 O 1.42898 * 109.46094 * 65.02731 * 11 10 9 13 13 C 1.53038 * 109.46261 * 184.99884 * 11 10 9 14 14 C 1.53189 * 109.31668 * 181.38506 * 13 11 10 15 15 N 1.46925 * 108.77586 * 305.36611 * 14 13 11 16 16 C 1.34778 * 120.63096 * 233.58451 * 15 14 13 17 17 O 1.21285 * 119.99571 * 359.97438 * 16 15 14 18 18 C 1.50692 * 120.00017 * 179.97438 * 16 15 14 19 19 N 1.46504 * 109.47132 * 179.97438 * 18 16 15 20 20 C 1.34774 * 124.17596 * 90.00026 * 19 18 16 21 21 O 1.21228 * 127.15742 * 359.70583 * 20 19 18 22 22 C 1.51580 * 105.68343 * 179.97438 * 20 19 18 23 23 N 1.47315 * 103.59511 * 0.02562 * 22 20 19 24 24 C 1.33791 * 124.17870 * 269.96164 * 19 18 16 25 25 O 1.21532 * 123.77167 * 0.03185 * 24 19 18 26 26 C 1.46921 * 118.73945 * 53.85703 * 15 14 13 27 27 C 1.53044 * 109.45853 * 305.06655 * 11 10 9 28 28 H 0.96995 * 120.00187 * 359.97438 * 1 2 3 29 29 H 0.96998 * 120.00102 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47153 * 59.99882 * 10 9 7 31 31 H 1.08993 * 109.47080 * 299.99396 * 10 9 7 32 32 H 0.96704 * 114.00061 * 299.97272 * 12 11 10 33 33 H 1.09006 * 109.49772 * 61.42643 * 13 11 10 34 34 H 1.09006 * 109.49762 * 301.33933 * 13 11 10 35 35 H 1.09005 * 109.58575 * 185.57752 * 14 13 11 36 36 H 1.08998 * 109.58561 * 65.15143 * 14 13 11 37 37 H 1.08997 * 109.47056 * 60.00038 * 18 16 15 38 38 H 1.09000 * 109.47247 * 299.99866 * 18 16 15 39 39 H 1.09002 * 110.59530 * 118.52828 * 22 20 19 40 40 H 1.08991 * 110.60543 * 241.47524 * 22 20 19 41 41 H 0.96994 * 126.69054 * 179.97438 * 23 22 20 42 42 H 1.08997 * 109.58908 * 65.92756 * 26 15 14 43 43 H 1.09004 * 109.58866 * 186.35452 * 26 15 14 44 44 H 1.08996 * 109.49828 * 298.56417 * 27 11 10 45 45 H 1.08996 * 109.50097 * 58.66563 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4002 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4404 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1122 -2.4707 0.0000 11 6 5.6164 -2.1911 0.0000 12 8 5.9805 -1.5448 1.2214 13 6 6.3805 -3.5111 -0.1257 14 6 7.8861 -3.2305 -0.0906 15 7 8.2079 -2.2454 -1.1321 16 6 9.1649 -2.5004 -2.0463 17 8 9.7700 -3.5511 -2.0138 18 6 9.4831 -1.4802 -3.1087 19 7 10.5507 -1.9910 -3.9721 20 6 10.3398 -2.7153 -5.0889 21 8 9.2717 -3.0585 -5.5483 22 6 11.7162 -3.0175 -5.6474 23 7 12.6284 -2.3678 -4.6904 24 6 11.8554 -1.7953 -3.7499 25 8 12.2934 -1.1710 -2.8037 26 6 7.4710 -0.9746 -1.1545 27 6 5.9661 -1.2828 -1.1811 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3620 0.0004 30 1 3.8492 -3.0421 -0.8902 31 1 3.8487 -3.0424 0.8897 32 1 5.5335 -0.6999 1.3678 33 1 6.1220 -3.9927 -1.0689 34 1 6.1131 -4.1666 0.7031 35 1 8.4343 -4.1536 -0.2788 36 1 8.1608 -2.8324 0.8862 37 1 9.8101 -0.5538 -2.6365 38 1 8.5922 -1.2883 -3.7066 39 1 11.8915 -4.0930 -5.6742 40 1 11.8305 -2.5845 -6.6411 41 1 13.5975 -2.3550 -4.7307 42 1 7.7126 -0.3963 -0.2627 43 1 7.7453 -0.4087 -2.0448 44 1 5.7117 -1.7853 -2.1143 45 1 5.4040 -0.3522 -1.1034 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274581735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:25 Heat of formation + Delta-G solvation = -94.316658 kcal Electronic energy + Delta-G solvation = -30671.643088 eV Core-core repulsion = 26305.217514 eV Total energy + Delta-G solvation = -4366.425574 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.75698 -40.44426 -38.94627 -38.67151 -36.47471 -35.76198 -35.05302 -34.23328 -32.24466 -31.52454 -30.68937 -29.21425 -27.98819 -26.85339 -23.90985 -23.59303 -23.30652 -22.11595 -21.18821 -20.30878 -19.25820 -18.45214 -18.15489 -17.97944 -17.17331 -16.90881 -16.31455 -16.08690 -15.68485 -15.59341 -15.33473 -14.91846 -14.63220 -14.55616 -14.40903 -14.34391 -14.04751 -13.92253 -13.54189 -13.31504 -13.11632 -12.76013 -12.50908 -12.45668 -12.09449 -11.76552 -11.46570 -11.40734 -11.25396 -11.22319 -10.96385 -10.81346 -10.68199 -10.34975 -10.29702 -10.00147 -9.78408 -9.66941 -9.58936 -9.01536 -8.75466 -7.35936 -5.85197 -3.22656 1.24813 1.63777 2.32236 2.49436 2.70233 2.91113 3.23863 3.28293 3.37015 3.55296 4.12090 4.27879 4.35112 4.48619 4.51554 4.57502 4.64745 4.74186 4.78532 4.89554 4.95449 5.00351 5.15708 5.23345 5.34860 5.39634 5.47798 5.52795 5.64503 5.79171 5.83856 5.95141 6.09740 6.20253 6.29314 6.36580 6.51122 6.56349 6.58060 6.94008 7.15608 7.68356 7.82459 7.87440 7.91124 8.32298 9.09188 9.80949 9.98606 11.33080 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018709 B = 0.002642 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.224672 B =10596.254636 C =10952.394256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.753 5.753 10 C 0.133 3.867 11 C 0.126 3.874 12 O -0.558 6.558 13 C -0.116 4.116 14 C 0.119 3.881 15 N -0.601 5.601 16 C 0.505 3.495 17 O -0.537 6.537 18 C 0.100 3.900 19 N -0.562 5.562 20 C 0.524 3.476 21 O -0.462 6.462 22 C 0.066 3.934 23 N -0.728 5.728 24 C 0.708 3.292 25 O -0.540 6.540 26 C 0.107 3.893 27 C -0.160 4.160 28 H 0.260 0.740 29 H 0.357 0.643 30 H 0.035 0.965 31 H 0.038 0.962 32 H 0.379 0.621 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.442 0.558 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.313 -3.640 -10.646 28.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.108 0.892 9 N -0.400 5.400 10 C 0.006 3.994 11 C 0.085 3.915 12 O -0.365 6.365 13 C -0.155 4.155 14 C -0.003 4.003 15 N -0.335 5.335 16 C 0.291 3.709 17 O -0.414 6.414 18 C -0.025 4.025 19 N -0.308 5.308 20 C 0.311 3.689 21 O -0.331 6.331 22 C -0.061 4.061 23 N -0.393 5.393 24 C 0.408 3.592 25 O -0.413 6.413 26 C -0.015 4.015 27 C -0.199 4.199 28 H 0.071 0.929 29 H 0.191 0.809 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.227 0.773 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.287 0.713 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 26.313 -4.642 -10.266 28.623 hybrid contribution 0.304 1.788 -0.086 1.815 sum 26.617 -2.854 -10.352 28.702 Atomic orbital electron populations 1.69693 1.05115 1.25914 1.57177 1.24695 0.95259 0.97205 1.01914 0.86563 0.79087 0.85095 0.77714 1.21000 1.21588 1.20519 1.19030 0.80403 0.94821 1.43361 0.89156 1.42689 1.04212 1.01768 1.91376 1.21305 0.88588 0.89844 0.99707 1.21375 0.94439 0.92089 0.83631 1.86419 1.70100 1.39731 1.40237 1.21849 0.94144 0.96034 1.03423 1.21566 0.95484 0.92728 0.90478 1.48059 1.36464 1.18937 1.29998 1.20615 0.79886 0.88057 0.82369 1.90699 1.50764 1.26225 1.73720 1.21542 0.91078 0.97585 0.92342 1.45851 1.07740 1.51535 1.25703 1.20916 0.91618 0.76380 0.79938 1.90857 1.29173 1.50192 1.62891 1.22454 0.86220 1.02073 0.95393 1.45344 1.09361 1.57670 1.26908 1.15752 0.80822 0.79751 0.82845 1.91029 1.75355 1.44197 1.30714 1.21916 0.92017 0.84721 1.02867 1.22656 0.94710 1.02059 1.00452 0.92935 0.80938 0.94672 0.94369 0.77299 0.90154 0.89605 0.89228 0.90339 0.85466 0.85486 0.85675 0.85698 0.71343 0.90015 0.90126 0.90031 0.89676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.61 13.97 55.49 0.78 -27.84 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.89 20.85 27.74 -169.99 -4.71 16.14 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -5.91 6.52 56.52 0.37 -5.54 16 7 C -0.25 -6.71 10.47 -15.06 -0.16 -6.87 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.75 -16.48 4.87 -59.91 -0.29 -16.77 16 10 C 0.13 2.41 5.43 -4.04 -0.02 2.39 16 11 C 0.13 1.78 0.71 -90.58 -0.06 1.72 16 12 O -0.56 -8.10 11.70 -35.23 -0.41 -8.51 16 13 C -0.12 -1.47 5.11 -26.61 -0.14 -1.60 16 14 C 0.12 1.48 6.19 -3.71 -0.02 1.46 16 15 N -0.60 -7.20 2.97 -172.50 -0.51 -7.71 16 16 C 0.50 6.53 7.77 -10.99 -0.09 6.45 16 17 O -0.54 -8.70 15.84 5.55 0.09 -8.62 16 18 C 0.10 0.98 4.52 -5.20 -0.02 0.96 16 19 N -0.56 -5.66 2.09 -122.03 -0.26 -5.92 16 20 C 0.52 4.78 8.32 -10.55 -0.09 4.69 16 21 O -0.46 -5.64 17.76 5.60 0.10 -5.54 16 22 C 0.07 0.28 7.97 -4.32 -0.03 0.24 16 23 N -0.73 -4.09 6.58 -65.74 -0.43 -4.52 16 24 C 0.71 7.25 8.62 -88.02 -0.76 6.49 16 25 O -0.54 -7.45 17.48 5.34 0.09 -7.36 16 26 C 0.11 1.11 6.13 -3.48 -0.02 1.09 16 27 C -0.16 -2.03 4.89 -26.38 -0.13 -2.16 16 28 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.36 7.32 3.41 -40.82 -0.14 7.18 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.38 5.29 8.19 45.56 0.37 5.66 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.09 1.17 7.01 -51.93 -0.36 0.80 16 36 H 0.08 0.99 7.81 -51.93 -0.41 0.59 16 37 H 0.13 1.05 7.65 -51.93 -0.40 0.65 16 38 H 0.13 1.02 7.57 -51.93 -0.39 0.63 16 39 H 0.13 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.13 0.14 8.14 -51.93 -0.42 -0.28 16 41 H 0.44 1.31 8.96 -40.82 -0.37 0.95 16 42 H 0.08 0.83 7.81 -51.93 -0.41 0.42 16 43 H 0.08 0.62 5.93 -51.93 -0.31 0.31 16 44 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.08 1.15 6.53 -51.93 -0.34 0.81 16 LS Contribution 367.60 15.07 5.54 5.54 Total: -1.00 -38.07 367.60 -6.96 -45.03 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -5.29 Total: 11.16 kcal Atomic # 6 Polarization: 16.56 SS G_CDS: -1.64 Total: 14.92 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: -0.72 Total: -62.75 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.13 Total: -30.03 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.71 Total: 16.14 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -38.07 -6.96 -45.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274581735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.287 kcal (2) G-P(sol) polarization free energy of solvation -38.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds