Wall clock time and date at job start Sat Apr 11 2020 05:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99568 * 2 1 4 4 H 1.48509 * 109.46992 * 269.99962 * 3 2 1 5 5 H 1.48496 * 109.47332 * 29.99632 * 3 2 1 6 6 H 1.48503 * 109.47367 * 150.00361 * 3 2 1 7 7 C 1.38807 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00366 * 359.97438 * 7 2 1 9 9 N 1.36940 * 119.99774 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99891 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47018 * 179.97438 * 10 9 7 12 12 O 1.42898 * 109.46094 * 65.02731 * 11 10 9 13 13 C 1.53038 * 109.46261 * 184.99884 * 11 10 9 14 14 C 1.53189 * 109.31668 * 181.38506 * 13 11 10 15 15 N 1.46925 * 108.77586 * 305.36611 * 14 13 11 16 16 C 1.34778 * 120.63096 * 233.58451 * 15 14 13 17 17 O 1.21285 * 119.99571 * 359.97438 * 16 15 14 18 18 C 1.50692 * 120.00017 * 179.97438 * 16 15 14 19 19 N 1.46504 * 109.47132 * 179.97438 * 18 16 15 20 20 C 1.34774 * 124.17596 * 90.00026 * 19 18 16 21 21 O 1.21228 * 127.15742 * 359.70583 * 20 19 18 22 22 C 1.51580 * 105.68343 * 179.97438 * 20 19 18 23 23 N 1.47315 * 103.59511 * 0.02562 * 22 20 19 24 24 C 1.33791 * 124.17870 * 269.96164 * 19 18 16 25 25 O 1.21532 * 123.77167 * 0.03185 * 24 19 18 26 26 C 1.46921 * 118.73945 * 53.85703 * 15 14 13 27 27 C 1.53044 * 109.45853 * 305.06655 * 11 10 9 28 28 H 0.96995 * 120.00187 * 359.97438 * 1 2 3 29 29 H 0.96998 * 120.00102 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47153 * 59.99882 * 10 9 7 31 31 H 1.08993 * 109.47080 * 299.99396 * 10 9 7 32 32 H 0.96704 * 114.00061 * 299.97272 * 12 11 10 33 33 H 1.09006 * 109.49772 * 61.42643 * 13 11 10 34 34 H 1.09006 * 109.49762 * 301.33933 * 13 11 10 35 35 H 1.09005 * 109.58575 * 185.57752 * 14 13 11 36 36 H 1.08998 * 109.58561 * 65.15143 * 14 13 11 37 37 H 1.08997 * 109.47056 * 60.00038 * 18 16 15 38 38 H 1.09000 * 109.47247 * 299.99866 * 18 16 15 39 39 H 1.09002 * 110.59530 * 118.52828 * 22 20 19 40 40 H 1.08991 * 110.60543 * 241.47524 * 22 20 19 41 41 H 0.96994 * 126.69054 * 179.97438 * 23 22 20 42 42 H 1.08997 * 109.58908 * 65.92756 * 26 15 14 43 43 H 1.09004 * 109.58866 * 186.35452 * 26 15 14 44 44 H 1.08996 * 109.49828 * 298.56417 * 27 11 10 45 45 H 1.08996 * 109.50097 * 58.66563 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4002 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4404 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1122 -2.4707 0.0000 11 6 5.6164 -2.1911 0.0000 12 8 5.9805 -1.5448 1.2214 13 6 6.3805 -3.5111 -0.1257 14 6 7.8861 -3.2305 -0.0906 15 7 8.2079 -2.2454 -1.1321 16 6 9.1649 -2.5004 -2.0463 17 8 9.7700 -3.5511 -2.0138 18 6 9.4831 -1.4802 -3.1087 19 7 10.5507 -1.9910 -3.9721 20 6 10.3398 -2.7153 -5.0889 21 8 9.2717 -3.0585 -5.5483 22 6 11.7162 -3.0175 -5.6474 23 7 12.6284 -2.3678 -4.6904 24 6 11.8554 -1.7953 -3.7499 25 8 12.2934 -1.1710 -2.8037 26 6 7.4710 -0.9746 -1.1545 27 6 5.9661 -1.2828 -1.1811 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3620 0.0004 30 1 3.8492 -3.0421 -0.8902 31 1 3.8487 -3.0424 0.8897 32 1 5.5335 -0.6999 1.3678 33 1 6.1220 -3.9927 -1.0689 34 1 6.1131 -4.1666 0.7031 35 1 8.4343 -4.1536 -0.2788 36 1 8.1608 -2.8324 0.8862 37 1 9.8101 -0.5538 -2.6365 38 1 8.5922 -1.2883 -3.7066 39 1 11.8915 -4.0930 -5.6742 40 1 11.8305 -2.5845 -6.6411 41 1 13.5975 -2.3550 -4.7307 42 1 7.7126 -0.3963 -0.2627 43 1 7.7453 -0.4087 -2.0448 44 1 5.7117 -1.7853 -2.1143 45 1 5.4040 -0.3522 -1.1034 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274581735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:24 Heat of formation + Delta-G solvation = -127.343590 kcal Electronic energy + Delta-G solvation = -30673.075243 eV Core-core repulsion = 26305.217514 eV Total energy + Delta-G solvation = -4367.857729 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.42790 -41.45296 -39.82211 -39.69483 -37.23052 -36.96234 -35.89557 -35.73488 -33.68633 -32.93198 -31.98167 -30.05622 -28.67031 -28.13209 -25.38969 -24.59872 -23.98473 -23.47207 -22.23569 -21.32589 -20.20010 -20.00679 -19.11895 -18.89139 -17.89750 -17.69788 -17.31580 -17.09137 -16.72082 -16.51629 -16.33090 -16.21662 -16.04527 -15.67368 -15.31689 -15.04614 -15.00869 -14.86522 -14.81359 -14.52185 -14.32299 -14.07748 -13.65137 -13.52114 -13.37660 -13.17410 -12.84041 -12.74712 -12.33245 -12.26838 -12.18651 -12.10623 -11.88264 -11.71514 -11.41531 -11.40881 -11.00859 -10.89335 -10.68358 -10.42154 -9.76588 -9.34650 -8.02865 -5.39013 0.59044 0.98711 1.36796 1.36893 1.44469 1.51558 1.72134 2.06590 2.26434 2.49118 3.01580 3.18865 3.26939 3.32731 3.43087 3.65937 3.68941 3.79924 3.91697 4.04397 4.06259 4.20134 4.28096 4.30720 4.31115 4.38925 4.53090 4.61956 4.65074 4.70151 4.78280 4.83753 4.94454 5.03177 5.09470 5.27407 5.40430 5.73712 5.80634 5.95074 6.18525 6.20383 6.33116 6.72126 6.90092 7.05832 7.06253 7.77059 7.98784 9.18601 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018709 B = 0.002642 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.224672 B =10596.254636 C =10952.394256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.066 4.066 3 Si 0.958 3.042 4 H -0.274 1.274 5 H -0.300 1.300 6 H -0.237 1.237 7 C -0.239 4.239 8 H 0.049 0.951 9 N -0.748 5.748 10 C 0.131 3.869 11 C 0.136 3.864 12 O -0.559 6.559 13 C -0.111 4.111 14 C 0.124 3.876 15 N -0.600 5.600 16 C 0.499 3.501 17 O -0.577 6.577 18 C 0.096 3.904 19 N -0.569 5.569 20 C 0.515 3.485 21 O -0.501 6.501 22 C 0.077 3.923 23 N -0.707 5.707 24 C 0.700 3.300 25 O -0.584 6.584 26 C 0.110 3.890 27 C -0.158 4.158 28 H 0.258 0.742 29 H 0.368 0.632 30 H 0.031 0.969 31 H 0.024 0.976 32 H 0.383 0.617 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.167 0.833 41 H 0.455 0.545 42 H 0.091 0.909 43 H 0.113 0.887 44 H 0.078 0.922 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.452 -2.347 -11.964 31.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.257 4.257 3 Si 0.784 3.216 4 H -0.199 1.199 5 H -0.227 1.227 6 H -0.161 1.161 7 C -0.370 4.370 8 H 0.067 0.933 9 N -0.396 5.396 10 C 0.005 3.995 11 C 0.095 3.905 12 O -0.366 6.366 13 C -0.150 4.150 14 C 0.002 3.998 15 N -0.333 5.333 16 C 0.287 3.713 17 O -0.457 6.457 18 C -0.029 4.029 19 N -0.314 5.314 20 C 0.305 3.695 21 O -0.372 6.372 22 C -0.049 4.049 23 N -0.372 5.372 24 C 0.400 3.600 25 O -0.460 6.460 26 C -0.012 4.012 27 C -0.197 4.197 28 H 0.067 0.933 29 H 0.203 0.797 30 H 0.049 0.951 31 H 0.042 0.958 32 H 0.232 0.768 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.162 0.838 38 H 0.163 0.837 39 H 0.168 0.832 40 H 0.184 0.816 41 H 0.303 0.697 42 H 0.109 0.891 43 H 0.131 0.869 44 H 0.097 0.903 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 29.529 -3.377 -11.610 31.908 hybrid contribution -0.732 1.228 0.323 1.466 sum 28.797 -2.148 -11.286 31.004 Atomic orbital electron populations 1.69906 1.07507 1.26883 1.59290 1.25626 0.96186 1.01741 1.02179 0.85385 0.79106 0.78731 0.78409 1.19943 1.22743 1.16109 1.18959 0.82728 0.93340 1.41987 0.93272 1.42536 1.02344 1.03647 1.91071 1.21428 0.91280 0.88153 0.98688 1.21246 0.91442 0.93316 0.84537 1.86432 1.69876 1.39999 1.40309 1.21805 0.94219 0.95317 1.03624 1.21447 0.94814 0.92778 0.90775 1.48137 1.36302 1.19319 1.29496 1.21195 0.79351 0.88101 0.82689 1.90672 1.52200 1.28008 1.74781 1.21676 0.92129 0.97092 0.91963 1.46017 1.07841 1.51611 1.25969 1.21721 0.92990 0.75336 0.79449 1.90837 1.30987 1.51581 1.63803 1.22722 0.82479 1.03639 0.96101 1.45329 1.10024 1.56091 1.25798 1.15981 0.81118 0.79819 0.83083 1.90994 1.75989 1.46376 1.32684 1.22056 0.89964 0.84166 1.05025 1.22612 0.96480 1.01320 0.99260 0.93299 0.79661 0.95148 0.95753 0.76850 0.90120 0.89343 0.90085 0.90285 0.83770 0.83660 0.83163 0.81551 0.69719 0.89071 0.86889 0.90306 0.89855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.28 13.97 21.65 0.30 -61.98 16 2 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 3 Si 0.96 42.17 27.74 68.60 1.90 44.07 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 6 H -0.24 -8.72 6.52 99.48 0.65 -8.07 16 7 C -0.24 -13.25 10.47 84.03 0.88 -12.37 16 8 H 0.05 3.06 8.06 -2.91 -0.02 3.04 16 9 N -0.75 -32.06 4.87 -343.46 -1.67 -33.73 16 10 C 0.13 4.71 5.43 86.38 0.47 5.18 16 11 C 0.14 3.64 0.71 -10.77 -0.01 3.63 16 12 O -0.56 -14.96 11.70 -148.98 -1.74 -16.70 16 13 C -0.11 -2.70 5.11 30.67 0.16 -2.54 16 14 C 0.12 2.95 6.19 86.36 0.53 3.49 16 15 N -0.60 -13.28 2.97 -818.07 -2.43 -15.71 16 16 C 0.50 12.28 7.77 87.65 0.68 12.96 16 17 O -0.58 -18.48 15.84 -3.04 -0.05 -18.53 16 18 C 0.10 1.71 4.52 85.63 0.39 2.10 16 19 N -0.57 -10.49 2.09 -777.23 -1.63 -12.12 16 20 C 0.52 8.37 8.32 87.94 0.73 9.10 16 21 O -0.50 -11.58 17.76 -2.87 -0.05 -11.63 16 22 C 0.08 0.37 7.97 85.76 0.68 1.05 16 23 N -0.71 -5.96 6.58 -480.32 -3.16 -9.12 16 24 C 0.70 13.16 8.62 179.44 1.55 14.71 16 25 O -0.58 -15.59 17.48 -3.82 -0.07 -15.66 16 26 C 0.11 1.93 6.13 86.51 0.53 2.46 16 27 C -0.16 -3.61 4.89 30.82 0.15 -3.46 16 28 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 29 H 0.37 14.14 3.41 -92.71 -0.32 13.82 16 30 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.38 9.55 8.19 -74.05 -0.61 8.95 16 33 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 35 H 0.08 2.09 7.01 -2.38 -0.02 2.08 16 36 H 0.08 1.88 7.81 -2.39 -0.02 1.86 16 37 H 0.14 2.03 7.65 -2.39 -0.02 2.01 16 38 H 0.15 1.99 7.57 -2.39 -0.02 1.97 16 39 H 0.15 0.15 8.14 -2.39 -0.02 0.13 16 40 H 0.17 -0.43 8.14 -2.39 -0.02 -0.45 16 41 H 0.46 1.37 8.96 -92.71 -0.83 0.53 16 42 H 0.09 1.51 7.81 -2.39 -0.02 1.49 16 43 H 0.11 1.29 5.93 -2.38 -0.01 1.27 16 44 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.08 1.97 6.53 -2.39 -0.02 1.96 16 Total: -1.00 -86.69 367.60 -2.12 -88.81 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: -0.74 Total: 29.28 kcal Atomic # 6 Polarization: 25.81 SS G_CDS: 7.21 Total: 33.02 kcal Atomic # 7 Polarization: -124.08 SS G_CDS: -8.59 Total: -132.66 kcal Atomic # 8 Polarization: -60.61 SS G_CDS: -1.91 Total: -62.52 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.90 Total: 44.07 kcal Total: -86.69 -2.12 -88.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274581735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.532 kcal (2) G-P(sol) polarization free energy of solvation -86.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds