Wall clock time and date at job start Sat Apr 11 2020 05:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86792 * 120.00219 * 2 1 4 4 H 1.48497 * 109.47301 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47269 * 299.99823 * 3 2 1 6 6 H 1.48502 * 109.47248 * 59.99742 * 3 2 1 7 7 C 1.38948 * 119.99681 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99908 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00336 * 359.97438 * 7 2 1 10 10 C 1.34766 * 119.99954 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00541 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99712 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47102 * 180.02562 * 12 10 9 14 14 C 1.46897 * 110.99971 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47238 * 179.97438 * 14 13 12 16 16 H 1.09005 * 112.84372 * 43.80284 * 15 14 13 17 17 C 1.53781 * 113.61682 * 174.99922 * 15 14 13 18 18 C 1.53780 * 87.08080 * 139.98464 * 17 15 14 19 19 H 1.08996 * 113.61621 * 219.93534 * 18 17 15 20 20 N 1.46496 * 113.61557 * 89.11710 * 18 17 15 21 21 C 1.34778 * 120.00204 * 154.99729 * 20 18 17 22 22 O 1.21281 * 119.99793 * 0.02562 * 21 20 18 23 23 C 1.50703 * 120.00142 * 179.97438 * 21 20 18 24 24 H 1.09002 * 110.50696 * 319.30261 * 23 21 20 25 25 C 1.54090 * 110.68702 * 82.13204 * 23 21 20 26 26 O 1.45701 * 104.00679 * 118.63424 * 25 23 21 27 27 C 1.33769 * 109.47900 * 359.97438 * 26 25 23 28 28 O 1.21509 * 123.06814 * 179.97438 * 27 26 25 29 29 N 1.34001 * 113.85580 * 359.97438 * 27 26 25 30 30 C 1.53778 * 87.08430 * 334.56973 * 18 17 15 31 31 H 0.97006 * 119.99962 * 0.02562 * 1 2 3 32 32 H 0.97007 * 119.99378 * 0.02562 * 9 7 2 33 33 H 1.09001 * 109.46915 * 60.00544 * 12 10 9 34 34 H 1.08998 * 109.47014 * 300.00014 * 12 10 9 35 35 H 1.00901 * 111.00056 * 56.04421 * 13 12 10 36 36 H 1.09003 * 109.47044 * 60.00360 * 14 13 12 37 37 H 1.08998 * 109.47101 * 299.99859 * 14 13 12 38 38 H 1.08999 * 113.60958 * 25.43679 * 17 15 14 39 39 H 1.08997 * 113.68933 * 254.54255 * 17 15 14 40 40 H 0.97004 * 120.00426 * 334.99817 * 20 18 17 41 41 H 1.08998 * 110.51887 * 237.26385 * 25 23 21 42 42 H 1.08996 * 110.52399 * 0.02562 * 25 23 21 43 43 H 0.96997 * 125.56143 * 179.97438 * 29 27 26 44 44 H 1.08998 * 113.62226 * 139.97843 * 30 18 17 45 45 H 1.09002 * 113.61431 * 270.88736 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5578 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2435 -4.8630 -0.0011 13 7 2.1981 -5.9796 -0.0004 14 6 1.4978 -7.2708 -0.0015 15 6 2.5226 -8.4069 -0.0014 16 1 3.3439 -8.2358 0.6946 17 6 1.8930 -9.8046 0.1203 18 6 2.9323 -10.2763 -0.9103 19 1 2.5333 -10.9774 -1.6433 20 7 4.1879 -10.7341 -0.3102 21 6 4.9690 -11.6127 -0.9694 22 8 4.6326 -12.0239 -2.0597 23 6 6.2609 -12.0831 -0.3524 24 1 6.7759 -11.2545 0.1337 25 6 6.0012 -13.2228 0.6517 26 8 6.7376 -14.3528 0.1007 27 6 7.3405 -13.9816 -1.0343 28 8 8.0232 -14.7352 -1.6995 29 7 7.1228 -12.7029 -1.3705 30 6 2.9820 -8.8225 -1.4089 31 1 -0.4850 0.8401 -0.0004 32 1 0.3532 -2.3906 -0.0005 33 1 0.6173 -4.9205 -0.8914 34 1 0.6166 -4.9209 0.8886 35 1 2.8324 -5.9125 0.7815 36 1 0.8739 -7.3450 -0.8923 37 1 0.8719 -7.3455 0.8877 38 1 0.8659 -9.8537 -0.2415 39 1 2.0173 -10.2568 1.1042 40 1 4.4572 -10.4050 0.5617 41 1 6.3866 -12.9593 1.6367 42 1 4.9366 -13.4502 0.7048 43 1 7.4770 -12.2581 -2.1563 44 1 3.9863 -8.4807 -1.6591 45 1 2.2526 -8.6032 -2.1887 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276969996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:32 Heat of formation + Delta-G solvation = -114.000773 kcal Electronic energy + Delta-G solvation = -28206.797048 eV Core-core repulsion = 23839.517907 eV Total energy + Delta-G solvation = -4367.279141 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.35431 -40.57606 -38.94675 -38.22031 -37.58709 -35.41730 -35.18467 -34.00178 -33.55630 -31.26654 -30.48876 -28.59085 -26.08654 -25.95764 -25.16832 -23.76977 -22.93157 -22.21287 -21.60235 -19.82762 -19.16346 -18.73192 -18.59165 -17.91709 -17.53217 -16.84383 -16.26809 -16.17197 -15.70174 -15.57208 -15.28359 -14.88453 -14.82679 -14.75268 -14.52214 -14.18226 -14.13474 -14.02217 -13.76883 -13.31547 -13.17316 -12.80290 -12.62168 -12.36769 -11.86467 -11.61334 -11.54911 -11.48798 -11.20984 -11.12808 -11.09760 -10.86837 -10.76373 -10.49520 -10.37755 -10.26098 -9.86237 -9.57310 -9.55902 -8.50344 -8.09877 -7.99938 -6.45814 -3.86757 1.76176 1.94339 2.19358 2.46365 2.97624 3.13144 3.24021 3.31009 3.36643 3.78669 3.86294 3.95629 3.97688 4.13767 4.17943 4.34849 4.43085 4.53807 4.54505 4.73418 4.74631 5.10221 5.17450 5.22110 5.28786 5.37992 5.39941 5.44971 5.54545 5.75103 5.82390 5.86295 5.88585 5.93722 6.18983 6.20619 6.24163 6.63651 6.82368 7.16066 7.48884 7.51480 7.57244 7.60362 8.02481 8.56917 9.13913 9.50196 10.01358 10.71933 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024883 B = 0.001514 C = 0.001461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.014863 B =18490.262349 C =19156.423695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.668 5.668 14 C 0.068 3.932 15 C -0.105 4.105 16 H 0.090 0.910 17 C -0.139 4.139 18 C 0.113 3.887 19 H 0.103 0.897 20 N -0.703 5.703 21 C 0.504 3.496 22 O -0.515 6.515 23 C 0.076 3.924 24 H 0.130 0.870 25 C 0.055 3.945 26 O -0.322 6.322 27 C 0.651 3.349 28 O -0.515 6.515 29 N -0.710 5.710 30 C -0.133 4.133 31 H 0.271 0.729 32 H 0.392 0.608 33 H 0.085 0.915 34 H 0.042 0.958 35 H 0.347 0.653 36 H 0.072 0.928 37 H 0.027 0.973 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.404 0.596 41 H 0.122 0.878 42 H 0.110 0.890 43 H 0.442 0.558 44 H 0.073 0.927 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.156 -23.668 4.850 24.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.469 6.469 12 C -0.082 4.082 13 N -0.300 5.300 14 C -0.062 4.062 15 C -0.124 4.124 16 H 0.108 0.892 17 C -0.178 4.178 18 C 0.008 3.992 19 H 0.121 0.879 20 N -0.355 5.355 21 C 0.287 3.713 22 O -0.389 6.389 23 C -0.035 4.035 24 H 0.148 0.852 25 C -0.021 4.021 26 O -0.232 6.232 27 C 0.404 3.596 28 O -0.399 6.399 29 N -0.383 5.383 30 C -0.172 4.172 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.103 0.897 34 H 0.060 0.940 35 H 0.166 0.834 36 H 0.091 0.909 37 H 0.045 0.955 38 H 0.116 0.884 39 H 0.092 0.908 40 H 0.239 0.761 41 H 0.140 0.860 42 H 0.128 0.872 43 H 0.286 0.714 44 H 0.092 0.908 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.988 -24.521 3.270 25.236 hybrid contribution -0.525 1.633 1.011 1.991 sum 4.463 -22.888 4.281 23.709 Atomic orbital electron populations 1.69621 1.05948 1.28083 1.50615 1.25267 0.95641 0.99748 0.97291 0.85796 0.79697 0.81100 0.77725 1.19226 1.20716 1.20766 1.19757 0.93406 0.82234 1.47547 0.87864 1.41878 1.09210 1.04639 1.64306 1.19819 0.88389 0.84739 0.84484 1.90518 1.13773 1.87084 1.55475 1.21671 0.94371 0.91050 1.01130 1.60049 1.18874 0.99915 1.51141 1.21970 0.95080 0.88750 1.00380 1.22575 0.98440 0.93232 0.98108 0.89151 1.23363 0.99111 0.96070 0.99236 1.22000 0.83708 0.96764 0.96726 0.87863 1.45635 1.22370 1.45008 1.22444 1.20542 0.85226 0.79375 0.86137 1.90800 1.72230 1.55926 1.19950 1.22325 0.91617 0.99131 0.90429 0.85233 1.24259 0.99228 0.81481 0.97086 1.87316 1.62474 1.36249 1.37177 1.18408 0.79113 0.82018 0.80088 1.91111 1.41086 1.55225 1.52454 1.45671 1.52491 1.11493 1.28624 1.23373 1.02995 0.93692 0.97125 0.91905 0.77465 0.89668 0.93975 0.83356 0.90927 0.95460 0.88423 0.90847 0.76100 0.85965 0.87162 0.71381 0.90806 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.13 13.05 55.50 0.72 -23.40 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 9 N -0.56 -13.98 5.29 -10.96 -0.06 -14.04 16 10 C 0.44 10.08 7.82 -10.99 -0.09 9.99 16 11 O -0.58 -15.44 15.78 5.54 0.09 -15.35 16 12 C 0.05 0.84 6.17 -4.97 -0.03 0.81 16 13 N -0.67 -9.69 6.12 -115.06 -0.70 -10.39 16 14 C 0.07 0.68 5.52 -3.83 -0.02 0.66 16 15 C -0.10 -0.77 3.78 -89.81 -0.34 -1.11 16 16 H 0.09 0.63 8.13 -51.93 -0.42 0.21 16 17 C -0.14 -0.72 7.39 -25.92 -0.19 -0.91 16 18 C 0.11 0.72 4.32 -67.12 -0.29 0.43 16 19 H 0.10 0.82 7.46 -51.93 -0.39 0.43 16 20 N -0.70 -3.15 5.26 -53.02 -0.28 -3.42 16 21 C 0.50 3.22 6.95 -10.98 -0.08 3.15 16 22 O -0.52 -5.81 16.18 5.56 0.09 -5.72 16 23 C 0.08 0.28 4.17 -68.19 -0.28 -0.01 16 24 H 0.13 0.03 8.14 -51.93 -0.42 -0.39 16 25 C 0.06 0.16 7.87 37.73 0.30 0.46 16 26 O -0.32 -2.66 11.09 -37.83 -0.42 -3.08 16 27 C 0.65 6.65 9.16 53.71 0.49 7.14 16 28 O -0.52 -7.46 18.04 -19.12 -0.34 -7.80 16 29 N -0.71 -4.85 5.64 -59.36 -0.33 -5.18 16 30 C -0.13 -1.09 7.43 -25.92 -0.19 -1.28 16 31 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 33 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.35 5.16 8.43 -39.29 -0.33 4.83 16 36 H 0.07 0.73 7.84 -51.93 -0.41 0.32 16 37 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.10 0.49 8.10 -51.93 -0.42 0.07 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.40 0.63 8.70 -40.82 -0.36 0.28 16 41 H 0.12 -0.08 8.14 -51.93 -0.42 -0.50 16 42 H 0.11 0.22 7.73 -51.93 -0.40 -0.18 16 43 H 0.44 2.67 8.96 -40.82 -0.37 2.30 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.09 0.81 7.90 -51.93 -0.41 0.40 16 LS Contribution 386.70 15.07 5.83 5.83 Total: -1.00 -37.95 386.70 -7.69 -45.65 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -6.29 Total: 9.82 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: -0.96 Total: 11.42 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.65 Total: -56.44 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -0.59 Total: -31.95 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.95 -7.69 -45.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276969996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.354 kcal (2) G-P(sol) polarization free energy of solvation -37.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds