Wall clock time and date at job start Sat Apr 11 2020 05:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86792 * 120.00219 * 2 1 4 4 H 1.48497 * 109.47301 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47269 * 299.99823 * 3 2 1 6 6 H 1.48502 * 109.47248 * 59.99742 * 3 2 1 7 7 C 1.38948 * 119.99681 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99908 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00336 * 359.97438 * 7 2 1 10 10 C 1.34766 * 119.99954 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00541 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99712 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47102 * 180.02562 * 12 10 9 14 14 C 1.46897 * 110.99971 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47238 * 179.97438 * 14 13 12 16 16 H 1.09005 * 112.84372 * 43.80284 * 15 14 13 17 17 C 1.53781 * 113.61682 * 174.99922 * 15 14 13 18 18 C 1.53780 * 87.08080 * 139.98464 * 17 15 14 19 19 H 1.08996 * 113.61621 * 219.93534 * 18 17 15 20 20 N 1.46496 * 113.61557 * 89.11710 * 18 17 15 21 21 C 1.34778 * 120.00204 * 154.99729 * 20 18 17 22 22 O 1.21281 * 119.99793 * 0.02562 * 21 20 18 23 23 C 1.50703 * 120.00142 * 179.97438 * 21 20 18 24 24 H 1.09002 * 110.50696 * 319.30261 * 23 21 20 25 25 C 1.54090 * 110.68702 * 82.13204 * 23 21 20 26 26 O 1.45701 * 104.00679 * 118.63424 * 25 23 21 27 27 C 1.33769 * 109.47900 * 359.97438 * 26 25 23 28 28 O 1.21509 * 123.06814 * 179.97438 * 27 26 25 29 29 N 1.34001 * 113.85580 * 359.97438 * 27 26 25 30 30 C 1.53778 * 87.08430 * 334.56973 * 18 17 15 31 31 H 0.97006 * 119.99962 * 0.02562 * 1 2 3 32 32 H 0.97007 * 119.99378 * 0.02562 * 9 7 2 33 33 H 1.09001 * 109.46915 * 60.00544 * 12 10 9 34 34 H 1.08998 * 109.47014 * 300.00014 * 12 10 9 35 35 H 1.00901 * 111.00056 * 56.04421 * 13 12 10 36 36 H 1.09003 * 109.47044 * 60.00360 * 14 13 12 37 37 H 1.08998 * 109.47101 * 299.99859 * 14 13 12 38 38 H 1.08999 * 113.60958 * 25.43679 * 17 15 14 39 39 H 1.08997 * 113.68933 * 254.54255 * 17 15 14 40 40 H 0.97004 * 120.00426 * 334.99817 * 20 18 17 41 41 H 1.08998 * 110.51887 * 237.26385 * 25 23 21 42 42 H 1.08996 * 110.52399 * 0.02562 * 25 23 21 43 43 H 0.96997 * 125.56143 * 179.97438 * 29 27 26 44 44 H 1.08998 * 113.62226 * 139.97843 * 30 18 17 45 45 H 1.09002 * 113.61431 * 270.88736 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5578 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2435 -4.8630 -0.0011 13 7 2.1981 -5.9796 -0.0004 14 6 1.4978 -7.2708 -0.0015 15 6 2.5226 -8.4069 -0.0014 16 1 3.3439 -8.2358 0.6946 17 6 1.8930 -9.8046 0.1203 18 6 2.9323 -10.2763 -0.9103 19 1 2.5333 -10.9774 -1.6433 20 7 4.1879 -10.7341 -0.3102 21 6 4.9690 -11.6127 -0.9694 22 8 4.6326 -12.0239 -2.0597 23 6 6.2609 -12.0831 -0.3524 24 1 6.7759 -11.2545 0.1337 25 6 6.0012 -13.2228 0.6517 26 8 6.7376 -14.3528 0.1007 27 6 7.3405 -13.9816 -1.0343 28 8 8.0232 -14.7352 -1.6995 29 7 7.1228 -12.7029 -1.3705 30 6 2.9820 -8.8225 -1.4089 31 1 -0.4850 0.8401 -0.0004 32 1 0.3532 -2.3906 -0.0005 33 1 0.6173 -4.9205 -0.8914 34 1 0.6166 -4.9209 0.8886 35 1 2.8324 -5.9125 0.7815 36 1 0.8739 -7.3450 -0.8923 37 1 0.8719 -7.3455 0.8877 38 1 0.8659 -9.8537 -0.2415 39 1 2.0173 -10.2568 1.1042 40 1 4.4572 -10.4050 0.5617 41 1 6.3866 -12.9593 1.6367 42 1 4.9366 -13.4502 0.7048 43 1 7.4770 -12.2581 -2.1563 44 1 3.9863 -8.4807 -1.6591 45 1 2.2526 -8.6032 -2.1887 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276969996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:31 Heat of formation + Delta-G solvation = -148.495512 kcal Electronic energy + Delta-G solvation = -28208.292852 eV Core-core repulsion = 23839.517907 eV Total energy + Delta-G solvation = -4368.774945 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.90473 -41.15573 -40.14371 -39.46942 -38.35939 -36.55515 -35.80078 -35.73571 -34.33223 -33.24992 -30.98758 -29.65520 -27.31550 -26.56151 -25.98205 -25.02960 -23.56415 -22.97920 -22.11243 -21.14608 -20.24599 -19.83900 -19.29316 -19.05959 -18.11054 -17.84740 -17.34998 -16.93666 -16.83598 -16.47608 -16.22773 -15.96871 -15.93408 -15.50353 -15.34182 -15.25130 -15.17688 -14.92031 -14.58464 -14.44077 -14.11284 -13.65245 -13.50393 -13.30127 -13.24658 -13.03095 -12.88176 -12.55698 -12.40446 -12.11520 -12.06846 -11.97930 -11.77256 -11.51729 -11.51002 -11.38195 -11.11632 -10.40188 -10.32094 -10.09517 -10.00907 -9.22420 -8.46693 -5.95342 1.25587 1.36943 1.38198 1.42545 1.56376 1.59324 1.97093 2.06330 2.29500 2.56710 2.95829 3.07301 3.21009 3.39456 3.50778 3.62365 3.76335 3.84149 3.93627 4.05459 4.07581 4.33758 4.43075 4.47653 4.48705 4.57260 4.59155 4.68988 4.79255 4.88140 4.91528 4.96094 5.18068 5.25014 5.28474 5.41470 5.61391 5.66375 5.92229 6.05878 6.15181 6.42704 6.50563 6.60603 6.86817 7.10546 7.13176 7.57279 8.12369 8.70849 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024883 B = 0.001514 C = 0.001461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.014863 B =18490.262349 C =19156.423695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.334 4.334 8 H 0.079 0.921 9 N -0.574 5.574 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.065 3.935 13 N -0.683 5.683 14 C 0.068 3.932 15 C -0.100 4.100 16 H 0.100 0.900 17 C -0.119 4.119 18 C 0.117 3.883 19 H 0.086 0.914 20 N -0.685 5.685 21 C 0.504 3.496 22 O -0.571 6.571 23 C 0.081 3.919 24 H 0.177 0.823 25 C 0.051 3.949 26 O -0.339 6.339 27 C 0.648 3.352 28 O -0.573 6.573 29 N -0.704 5.704 30 C -0.142 4.142 31 H 0.277 0.723 32 H 0.396 0.604 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.344 0.656 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.423 0.577 41 H 0.170 0.830 42 H 0.120 0.880 43 H 0.443 0.557 44 H 0.054 0.946 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.370 -23.517 6.999 24.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.464 4.464 8 H 0.097 0.903 9 N -0.212 5.212 10 C 0.225 3.775 11 O -0.510 6.510 12 C -0.067 4.067 13 N -0.316 5.316 14 C -0.061 4.061 15 C -0.119 4.119 16 H 0.118 0.882 17 C -0.157 4.157 18 C 0.011 3.989 19 H 0.104 0.896 20 N -0.338 5.338 21 C 0.289 3.711 22 O -0.449 6.449 23 C -0.028 4.028 24 H 0.194 0.806 25 C -0.023 4.023 26 O -0.249 6.249 27 C 0.401 3.599 28 O -0.461 6.461 29 N -0.376 5.376 30 C -0.181 4.181 31 H 0.087 0.913 32 H 0.230 0.770 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.163 0.837 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.261 0.739 41 H 0.187 0.813 42 H 0.138 0.862 43 H 0.288 0.712 44 H 0.073 0.927 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.148 -24.340 5.484 25.292 hybrid contribution -0.346 1.604 0.359 1.680 sum 3.802 -22.735 5.842 23.780 Atomic orbital electron populations 1.69677 1.06813 1.29209 1.50425 1.26026 0.96534 1.02388 0.96303 0.84874 0.78041 0.77150 0.78293 1.19797 1.19766 1.19545 1.19709 0.92714 0.84090 1.49848 0.90317 1.41957 1.09340 1.04773 1.65104 1.20956 0.88293 0.86235 0.82048 1.90485 1.15870 1.88001 1.56644 1.21521 0.94111 0.88239 1.02872 1.60059 1.19149 1.01022 1.51349 1.22088 0.95735 0.87168 1.01091 1.22566 0.98343 0.93474 0.97486 0.88226 1.23267 0.98715 0.93789 0.99940 1.21849 0.84839 0.95108 0.97095 0.89612 1.45487 1.21430 1.44022 1.22856 1.21025 0.85848 0.78830 0.85414 1.90791 1.73579 1.58002 1.22531 1.22663 0.89978 1.00700 0.89492 0.80585 1.24797 0.99772 0.79364 0.98317 1.87274 1.62604 1.38615 1.36381 1.18566 0.78721 0.82361 0.80230 1.91051 1.43732 1.56897 1.54412 1.45707 1.52078 1.10637 1.29159 1.23397 1.01672 0.95344 0.97675 0.91327 0.76992 0.88262 0.91566 0.83705 0.90935 0.93815 0.87899 0.88379 0.73892 0.81302 0.86164 0.71230 0.92718 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.78 13.05 21.66 0.28 -48.50 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 3 Si 0.99 42.15 29.55 68.60 2.03 44.18 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.33 -18.66 9.68 84.04 0.81 -17.85 16 8 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 9 N -0.57 -28.75 5.29 -306.99 -1.62 -30.38 16 10 C 0.44 20.03 7.82 87.66 0.69 20.72 16 11 O -0.62 -33.45 15.78 -3.08 -0.05 -33.50 16 12 C 0.07 2.06 6.17 85.56 0.53 2.59 16 13 N -0.68 -18.71 6.12 -517.92 -3.17 -21.88 16 14 C 0.07 1.18 5.52 86.30 0.48 1.66 16 15 C -0.10 -1.21 3.78 -10.27 -0.04 -1.25 16 16 H 0.10 1.06 8.13 -2.38 -0.02 1.04 16 17 C -0.12 -0.82 7.39 31.12 0.23 -0.59 16 18 C 0.12 1.27 4.32 45.52 0.20 1.47 16 19 H 0.09 1.31 7.46 -2.39 -0.02 1.29 16 20 N -0.69 -4.31 5.26 -440.05 -2.32 -6.63 16 21 C 0.50 5.58 6.95 87.66 0.61 6.18 16 22 O -0.57 -12.89 16.18 -3.03 -0.05 -12.94 16 23 C 0.08 0.38 4.17 44.50 0.19 0.56 16 24 H 0.18 -0.75 8.14 -2.39 -0.02 -0.76 16 25 C 0.05 0.13 7.87 72.35 0.57 0.70 16 26 O -0.34 -5.23 11.09 -47.30 -0.52 -5.76 16 27 C 0.65 13.37 9.16 129.91 1.19 14.56 16 28 O -0.57 -17.54 18.04 19.66 0.35 -17.19 16 29 N -0.70 -9.15 5.64 -573.42 -3.23 -12.38 16 30 C -0.14 -2.18 7.43 31.12 0.23 -1.95 16 31 H 0.28 13.72 8.31 -92.70 -0.77 12.95 16 32 H 0.40 18.79 7.90 -92.70 -0.73 18.06 16 33 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.34 9.72 8.43 -89.69 -0.76 8.97 16 36 H 0.07 1.28 7.84 -2.39 -0.02 1.27 16 37 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.10 0.68 8.10 -2.39 -0.02 0.66 16 39 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.42 -0.42 8.70 -92.70 -0.81 -1.23 16 41 H 0.17 -1.11 8.14 -2.39 -0.02 -1.13 16 42 H 0.12 0.09 7.73 -2.39 -0.02 0.07 16 43 H 0.44 5.38 8.96 -92.71 -0.83 4.55 16 44 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.08 1.43 7.90 -2.39 -0.02 1.41 16 Total: -1.00 -87.46 386.70 -4.20 -91.66 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: -2.04 Total: 26.72 kcal Atomic # 6 Polarization: 20.44 SS G_CDS: 6.14 Total: 26.59 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -10.06 Total: -119.77 kcal Atomic # 8 Polarization: -69.12 SS G_CDS: -0.27 Total: -69.39 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -87.46 -4.20 -91.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276969996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.832 kcal (2) G-P(sol) polarization free energy of solvation -87.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds