Wall clock time and date at job start Sat Apr 11 2020 05:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31397 * 1 3 3 Si 1.86807 * 120.00028 * 2 1 4 4 H 1.48505 * 109.47162 * 270.00107 * 3 2 1 5 5 H 1.48500 * 109.46912 * 30.00048 * 3 2 1 6 6 H 1.48498 * 109.47233 * 150.00395 * 3 2 1 7 7 C 1.38949 * 120.00412 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99792 * 0.02562 * 7 2 1 9 9 N 1.37100 * 120.00612 * 179.97438 * 7 2 1 10 10 C 1.34768 * 120.00515 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99744 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00296 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47325 * 180.02562 * 12 10 9 14 14 C 1.46896 * 111.00313 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47341 * 185.03744 * 14 13 12 16 16 H 1.09002 * 109.99577 * 305.61247 * 15 14 13 17 17 C 1.54309 * 109.77304 * 66.77050 * 15 14 13 18 18 C 1.55156 * 102.86304 * 141.88621 * 17 15 14 19 19 C 1.54906 * 101.58119 * 324.30361 * 18 17 15 20 20 N 1.47019 * 109.87996 * 184.51898 * 15 14 13 21 21 C 1.34780 * 125.65058 * 61.67944 * 20 15 14 22 22 O 1.21282 * 119.99844 * 354.79139 * 21 20 15 23 23 C 1.50695 * 120.00292 * 174.79138 * 21 20 15 24 24 H 1.09001 * 110.62139 * 321.36609 * 23 21 20 25 25 C 1.54089 * 110.56780 * 84.19048 * 23 21 20 26 26 O 1.45692 * 104.01135 * 118.57317 * 25 23 21 27 27 C 1.33775 * 109.47760 * 359.75524 * 26 25 23 28 28 O 1.21508 * 123.07401 * 180.24078 * 27 26 25 29 29 N 1.34010 * 113.85544 * 0.43795 * 27 26 25 30 30 H 0.96999 * 120.00624 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99524 * 0.02562 * 9 7 2 32 32 H 1.08991 * 109.46865 * 60.00025 * 12 10 9 33 33 H 1.09005 * 109.46959 * 300.00202 * 12 10 9 34 34 H 1.00907 * 110.99887 * 303.95763 * 13 12 10 35 35 H 1.09004 * 109.47079 * 65.02950 * 14 13 12 36 36 H 1.09001 * 109.46669 * 305.03878 * 14 13 12 37 37 H 1.08996 * 110.92902 * 23.47192 * 17 15 14 38 38 H 1.09001 * 110.59210 * 260.14629 * 17 15 14 39 39 H 1.08998 * 111.00695 * 206.22584 * 18 17 15 40 40 H 1.09000 * 111.04160 * 82.38789 * 18 17 15 41 41 H 1.08999 * 110.36809 * 278.16814 * 19 18 17 42 42 H 1.09004 * 110.46140 * 155.89571 * 19 18 17 43 43 H 1.09001 * 110.52106 * 237.20617 * 25 23 21 44 44 H 1.09007 * 110.51331 * 359.94069 * 25 23 21 45 45 H 0.96999 * 125.56167 * 179.82823 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4402 0.6999 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1386 -0.0014 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3704 -0.0011 11 8 3.4473 -3.4208 -0.0011 12 6 5.5607 -2.3704 -0.0011 13 7 6.0505 -3.7554 -0.0017 14 6 7.5189 -3.7946 -0.0011 15 6 7.9905 -5.2445 -0.1284 16 1 7.5356 -5.8543 0.6522 17 6 7.6102 -5.7970 -1.5181 18 6 8.8375 -6.6703 -1.8903 19 6 10.0000 -5.8504 -1.2771 20 7 9.4554 -5.3051 -0.0204 21 6 10.1802 -4.9299 1.0522 22 8 9.6333 -4.4107 2.0021 23 6 11.6700 -5.1554 1.0713 24 1 11.9195 -6.1115 0.6113 25 6 12.4011 -4.0032 0.3555 26 8 13.2417 -3.4202 1.3929 27 6 13.0599 -4.0844 2.5398 28 8 13.6386 -3.8000 3.5697 29 7 12.1842 -5.0947 2.4481 30 1 -0.4851 0.8400 0.0004 31 1 3.8648 -0.3632 -0.0007 32 1 5.9240 -1.8566 0.8889 33 1 5.9241 -1.8565 -0.8911 34 1 5.6749 -4.2721 0.7795 35 1 7.8933 -3.3711 0.9310 36 1 7.8981 -3.2140 -0.8420 37 1 7.4806 -4.9878 -2.2367 38 1 6.7084 -6.4061 -1.4549 39 1 8.9451 -6.7522 -2.9719 40 1 8.7700 -7.6563 -1.4307 41 1 10.2887 -5.0412 -1.9480 42 1 10.8545 -6.4953 -1.0721 43 1 13.0128 -4.3874 -0.4608 44 1 11.6860 -3.2685 -0.0146 45 1 11.9282 -5.6868 3.1725 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277844574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:35 Heat of formation + Delta-G solvation = -118.072881 kcal Electronic energy + Delta-G solvation = -29548.135935 eV Core-core repulsion = 25180.680214 eV Total energy + Delta-G solvation = -4367.455721 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.34623 -40.51683 -38.53123 -38.05384 -37.52928 -35.50487 -35.14547 -33.90284 -32.40123 -31.68484 -30.78102 -29.89451 -27.07716 -25.75148 -24.71338 -23.41952 -22.90962 -22.64963 -21.47925 -19.89751 -19.33820 -18.74460 -18.47371 -18.18327 -17.50137 -17.02166 -16.56034 -15.96338 -15.68912 -15.58443 -15.05416 -14.97179 -14.81970 -14.73761 -14.35288 -14.16196 -13.98835 -13.86531 -13.57978 -13.42052 -13.20719 -12.87844 -12.68140 -12.50834 -12.08186 -11.88727 -11.76706 -11.65712 -11.43188 -11.22475 -11.17315 -11.07411 -11.06845 -10.78522 -10.59920 -9.98528 -9.81399 -9.58133 -9.23533 -8.60108 -8.21288 -8.16424 -6.31975 -3.83457 1.80197 1.92544 2.21421 2.40379 2.97213 3.02842 3.06595 3.14963 3.38566 3.58900 3.72903 3.92132 4.02877 4.09485 4.18372 4.27970 4.36354 4.50009 4.58016 4.71305 4.73009 4.83653 4.90136 5.00133 5.16004 5.22562 5.32035 5.45248 5.53808 5.59004 5.64278 5.75003 5.81001 5.90372 5.97641 6.02202 6.20610 6.66740 6.86409 7.02285 7.45119 7.51617 7.57153 7.59607 8.13347 8.58680 8.93885 9.41507 9.81373 10.81095 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014520 B = 0.002258 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.919408 B =12394.853540 C =13675.536524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.451 3.549 11 O -0.565 6.565 12 C 0.050 3.950 13 N -0.663 5.663 14 C 0.047 3.953 15 C 0.142 3.858 16 H 0.080 0.920 17 C -0.113 4.113 18 C -0.137 4.137 19 C 0.092 3.908 20 N -0.609 5.609 21 C 0.515 3.485 22 O -0.510 6.510 23 C 0.080 3.920 24 H 0.127 0.873 25 C 0.056 3.944 26 O -0.321 6.321 27 C 0.652 3.348 28 O -0.514 6.514 29 N -0.711 5.711 30 H 0.273 0.727 31 H 0.371 0.629 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.351 0.649 35 H 0.044 0.956 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.121 0.879 44 H 0.110 0.890 45 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.662 -13.122 -6.019 31.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.236 3.764 11 O -0.447 6.447 12 C -0.083 4.083 13 N -0.296 5.296 14 C -0.084 4.084 15 C 0.039 3.961 16 H 0.098 0.902 17 C -0.151 4.151 18 C -0.175 4.175 19 C -0.031 4.031 20 N -0.344 5.344 21 C 0.300 3.700 22 O -0.384 6.384 23 C -0.031 4.031 24 H 0.144 0.856 25 C -0.020 4.020 26 O -0.231 6.231 27 C 0.404 3.596 28 O -0.398 6.398 29 N -0.384 5.384 30 H 0.084 0.916 31 H 0.203 0.797 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.171 0.829 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.139 0.861 44 H 0.128 0.872 45 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 27.258 -12.994 -5.729 30.735 hybrid contribution 0.409 1.321 1.079 1.754 sum 27.667 -11.673 -4.651 30.386 Atomic orbital electron populations 1.69612 1.05642 1.27522 1.49323 1.25036 0.95497 0.97987 0.97626 0.86675 0.79801 0.84039 0.78897 1.19582 1.20163 1.19518 1.19428 0.79216 0.96630 1.48107 0.86265 1.42208 1.07558 1.06178 1.67030 1.19670 0.88117 0.84569 0.84003 1.90559 1.69428 1.30920 1.53800 1.21681 0.95058 0.90259 1.01316 1.60002 1.05332 1.12897 1.51391 1.22291 0.89141 0.95566 1.01379 1.21601 0.78254 0.97048 0.99224 0.90190 1.22603 0.98000 0.99800 0.94687 1.22838 0.94275 0.98806 1.01548 1.22518 0.97635 0.97706 0.85237 1.48589 1.07881 1.63241 1.14735 1.20189 0.88256 0.79280 0.82317 1.90818 1.71757 1.41195 1.34668 1.22296 0.92675 1.02602 0.85491 0.85578 1.24237 0.93542 0.94126 0.90100 1.87320 1.61545 1.54292 1.19933 1.18410 0.79341 0.78341 0.83488 1.91111 1.52627 1.69520 1.26535 1.45692 1.44989 1.35561 1.12141 0.91595 0.79681 0.93712 0.89535 0.82937 0.93767 0.91065 0.89688 0.89119 0.89434 0.90475 0.90536 0.90416 0.86060 0.87179 0.71495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.77 13.96 55.50 0.77 -25.00 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 19.47 27.74 -169.99 -4.71 14.76 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 7 C -0.31 -8.65 10.16 -14.93 -0.15 -8.80 16 8 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 9 N -0.59 -14.10 5.09 -10.96 -0.06 -14.16 16 10 C 0.45 10.18 7.82 -10.99 -0.09 10.09 16 11 O -0.57 -14.99 15.78 5.55 0.09 -14.90 16 12 C 0.05 0.82 6.16 -4.98 -0.03 0.79 16 13 N -0.66 -9.81 5.89 -115.06 -0.68 -10.49 16 14 C 0.05 0.54 5.07 -3.83 -0.02 0.52 16 15 C 0.14 1.26 3.13 -66.96 -0.21 1.05 16 16 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 17 C -0.11 -0.81 6.27 -24.90 -0.16 -0.96 16 18 C -0.14 -0.51 7.08 -24.58 -0.17 -0.68 16 19 C 0.09 0.25 6.74 -2.53 -0.02 0.24 16 20 N -0.61 -3.95 3.07 -163.03 -0.50 -4.45 16 21 C 0.51 4.15 6.77 -10.99 -0.07 4.07 16 22 O -0.51 -6.64 15.39 5.56 0.09 -6.55 16 23 C 0.08 0.38 3.53 -68.19 -0.24 0.14 16 24 H 0.13 0.12 6.99 -51.93 -0.36 -0.25 16 25 C 0.06 0.23 7.87 37.73 0.30 0.52 16 26 O -0.32 -2.95 11.09 -37.84 -0.42 -3.37 16 27 C 0.65 7.15 9.16 53.71 0.49 7.64 16 28 O -0.51 -7.80 18.04 -19.11 -0.34 -8.14 16 29 N -0.71 -5.31 5.66 -59.35 -0.34 -5.65 16 30 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.37 7.80 5.76 -40.82 -0.24 7.57 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.35 5.59 8.48 -39.29 -0.33 5.25 16 35 H 0.04 0.60 6.56 -51.93 -0.34 0.26 16 36 H 0.07 0.76 8.02 -51.93 -0.42 0.34 16 37 H 0.08 0.67 7.78 -51.93 -0.40 0.27 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 42 H 0.08 0.01 6.90 -51.93 -0.36 -0.35 16 43 H 0.12 0.01 8.14 -51.93 -0.42 -0.41 16 44 H 0.11 0.43 7.72 -51.93 -0.40 0.03 16 45 H 0.44 2.82 8.96 -40.82 -0.37 2.46 16 LS Contribution 375.70 15.07 5.66 5.66 Total: -1.00 -39.01 375.70 -7.06 -46.07 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -6.16 Total: 10.57 kcal Atomic # 6 Polarization: 16.14 SS G_CDS: -0.47 Total: 15.67 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: -0.79 Total: -59.75 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.59 Total: -32.97 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.71 Total: 14.76 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -39.01 -7.06 -46.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277844574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.006 kcal (2) G-P(sol) polarization free energy of solvation -39.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds