Wall clock time and date at job start Sat Apr 11 2020 05:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31397 * 1 3 3 Si 1.86807 * 120.00028 * 2 1 4 4 H 1.48505 * 109.47162 * 270.00107 * 3 2 1 5 5 H 1.48500 * 109.46912 * 30.00048 * 3 2 1 6 6 H 1.48498 * 109.47233 * 150.00395 * 3 2 1 7 7 C 1.38949 * 120.00412 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99792 * 0.02562 * 7 2 1 9 9 N 1.37100 * 120.00612 * 179.97438 * 7 2 1 10 10 C 1.34768 * 120.00515 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99744 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00296 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47325 * 180.02562 * 12 10 9 14 14 C 1.46896 * 111.00313 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47341 * 185.03744 * 14 13 12 16 16 H 1.09002 * 109.99577 * 305.61247 * 15 14 13 17 17 C 1.54309 * 109.77304 * 66.77050 * 15 14 13 18 18 C 1.55156 * 102.86304 * 141.88621 * 17 15 14 19 19 C 1.54906 * 101.58119 * 324.30361 * 18 17 15 20 20 N 1.47019 * 109.87996 * 184.51898 * 15 14 13 21 21 C 1.34780 * 125.65058 * 61.67944 * 20 15 14 22 22 O 1.21282 * 119.99844 * 354.79139 * 21 20 15 23 23 C 1.50695 * 120.00292 * 174.79138 * 21 20 15 24 24 H 1.09001 * 110.62139 * 321.36609 * 23 21 20 25 25 C 1.54089 * 110.56780 * 84.19048 * 23 21 20 26 26 O 1.45692 * 104.01135 * 118.57317 * 25 23 21 27 27 C 1.33775 * 109.47760 * 359.75524 * 26 25 23 28 28 O 1.21508 * 123.07401 * 180.24078 * 27 26 25 29 29 N 1.34010 * 113.85544 * 0.43795 * 27 26 25 30 30 H 0.96999 * 120.00624 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99524 * 0.02562 * 9 7 2 32 32 H 1.08991 * 109.46865 * 60.00025 * 12 10 9 33 33 H 1.09005 * 109.46959 * 300.00202 * 12 10 9 34 34 H 1.00907 * 110.99887 * 303.95763 * 13 12 10 35 35 H 1.09004 * 109.47079 * 65.02950 * 14 13 12 36 36 H 1.09001 * 109.46669 * 305.03878 * 14 13 12 37 37 H 1.08996 * 110.92902 * 23.47192 * 17 15 14 38 38 H 1.09001 * 110.59210 * 260.14629 * 17 15 14 39 39 H 1.08998 * 111.00695 * 206.22584 * 18 17 15 40 40 H 1.09000 * 111.04160 * 82.38789 * 18 17 15 41 41 H 1.08999 * 110.36809 * 278.16814 * 19 18 17 42 42 H 1.09004 * 110.46140 * 155.89571 * 19 18 17 43 43 H 1.09001 * 110.52106 * 237.20617 * 25 23 21 44 44 H 1.09007 * 110.51331 * 359.94069 * 25 23 21 45 45 H 0.96999 * 125.56167 * 179.82823 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4402 0.6999 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1386 -0.0014 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3704 -0.0011 11 8 3.4473 -3.4208 -0.0011 12 6 5.5607 -2.3704 -0.0011 13 7 6.0505 -3.7554 -0.0017 14 6 7.5189 -3.7946 -0.0011 15 6 7.9905 -5.2445 -0.1284 16 1 7.5356 -5.8543 0.6522 17 6 7.6102 -5.7970 -1.5181 18 6 8.8375 -6.6703 -1.8903 19 6 10.0000 -5.8504 -1.2771 20 7 9.4554 -5.3051 -0.0204 21 6 10.1802 -4.9299 1.0522 22 8 9.6333 -4.4107 2.0021 23 6 11.6700 -5.1554 1.0713 24 1 11.9195 -6.1115 0.6113 25 6 12.4011 -4.0032 0.3555 26 8 13.2417 -3.4202 1.3929 27 6 13.0599 -4.0844 2.5398 28 8 13.6386 -3.8000 3.5697 29 7 12.1842 -5.0947 2.4481 30 1 -0.4851 0.8400 0.0004 31 1 3.8648 -0.3632 -0.0007 32 1 5.9240 -1.8566 0.8889 33 1 5.9241 -1.8565 -0.8911 34 1 5.6749 -4.2721 0.7795 35 1 7.8933 -3.3711 0.9310 36 1 7.8981 -3.2140 -0.8420 37 1 7.4806 -4.9878 -2.2367 38 1 6.7084 -6.4061 -1.4549 39 1 8.9451 -6.7522 -2.9719 40 1 8.7700 -7.6563 -1.4307 41 1 10.2887 -5.0412 -1.9480 42 1 10.8545 -6.4953 -1.0721 43 1 13.0128 -4.3874 -0.4608 44 1 11.6860 -3.2685 -0.0146 45 1 11.9282 -5.6868 3.1725 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277844574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:34 Heat of formation + Delta-G solvation = -154.082058 kcal Electronic energy + Delta-G solvation = -29549.697410 eV Core-core repulsion = 25180.680214 eV Total energy + Delta-G solvation = -4369.017196 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.94222 -41.14685 -40.30749 -38.81484 -38.31939 -36.67979 -35.90135 -35.74993 -33.77961 -32.97652 -31.50099 -30.49749 -28.38466 -26.41018 -25.97734 -24.47796 -23.58437 -23.36591 -21.99391 -21.36645 -20.58937 -20.10950 -19.29832 -18.85952 -18.15852 -17.82744 -17.68215 -17.11003 -16.76974 -16.69375 -16.42406 -15.85642 -15.63245 -15.41772 -15.31760 -15.19750 -14.98407 -14.87910 -14.65295 -14.35681 -14.14995 -13.98698 -13.79436 -13.36467 -13.30633 -13.22794 -12.90976 -12.66332 -12.44114 -12.08705 -12.01568 -11.99743 -11.94517 -11.82179 -11.54992 -11.53706 -11.50692 -10.49822 -10.40724 -10.27547 -9.77925 -9.41178 -8.43580 -6.04548 1.21193 1.28733 1.32655 1.33188 1.42294 1.59437 1.78655 1.91429 2.20598 2.51522 2.70227 3.03183 3.12153 3.16655 3.42387 3.65936 3.71176 3.81037 3.91547 3.98674 4.10534 4.27754 4.31986 4.39005 4.39125 4.44063 4.46282 4.50950 4.71047 4.75573 4.89188 5.06783 5.09351 5.24566 5.35351 5.47341 5.49827 5.60263 5.83029 5.95936 6.04518 6.22439 6.39654 6.56524 6.83301 6.84919 6.95607 7.36340 7.91978 8.73918 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014520 B = 0.002258 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.919408 B =12394.853540 C =13675.536524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.964 3.036 4 H -0.254 1.254 5 H -0.275 1.275 6 H -0.236 1.236 7 C -0.329 4.329 8 H 0.057 0.943 9 N -0.591 5.591 10 C 0.450 3.550 11 O -0.612 6.612 12 C 0.063 3.937 13 N -0.671 5.671 14 C 0.055 3.945 15 C 0.142 3.858 16 H 0.057 0.943 17 C -0.113 4.113 18 C -0.128 4.128 19 C 0.086 3.914 20 N -0.601 5.601 21 C 0.511 3.489 22 O -0.571 6.571 23 C 0.088 3.912 24 H 0.180 0.820 25 C 0.051 3.949 26 O -0.338 6.338 27 C 0.648 3.352 28 O -0.572 6.572 29 N -0.703 5.703 30 H 0.280 0.720 31 H 0.389 0.611 32 H 0.064 0.936 33 H 0.118 0.882 34 H 0.341 0.659 35 H 0.024 0.976 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.118 0.882 43 H 0.175 0.825 44 H 0.112 0.888 45 H 0.444 0.556 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.593 -12.671 -8.475 35.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.213 4.213 3 Si 0.784 3.216 4 H -0.178 1.178 5 H -0.200 1.200 6 H -0.160 1.160 7 C -0.458 4.458 8 H 0.075 0.925 9 N -0.233 5.233 10 C 0.238 3.762 11 O -0.496 6.496 12 C -0.069 4.069 13 N -0.303 5.303 14 C -0.075 4.075 15 C 0.038 3.962 16 H 0.075 0.925 17 C -0.151 4.151 18 C -0.166 4.166 19 C -0.035 4.035 20 N -0.334 5.334 21 C 0.297 3.703 22 O -0.450 6.450 23 C -0.021 4.021 24 H 0.197 0.803 25 C -0.023 4.023 26 O -0.248 6.248 27 C 0.402 3.598 28 O -0.460 6.460 29 N -0.375 5.375 30 H 0.089 0.911 31 H 0.225 0.775 32 H 0.082 0.918 33 H 0.136 0.864 34 H 0.158 0.842 35 H 0.042 0.958 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.126 0.874 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.136 0.864 43 H 0.193 0.807 44 H 0.130 0.870 45 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 31.213 -12.588 -8.267 34.656 hybrid contribution -0.952 1.025 1.758 2.246 sum 30.261 -11.563 -6.509 33.042 Atomic orbital electron populations 1.69789 1.08068 1.29284 1.50159 1.26095 0.96475 1.02650 0.96058 0.85379 0.79312 0.76853 0.80070 1.17787 1.20014 1.15951 1.19011 0.81393 0.94994 1.50418 0.92492 1.42041 1.05912 1.07583 1.67716 1.20863 0.90754 0.83366 0.81225 1.90538 1.71287 1.32671 1.55091 1.21605 0.89855 0.91856 1.03622 1.60046 1.07514 1.11787 1.50950 1.22303 0.86666 0.97617 1.00865 1.21438 0.80121 0.94969 0.99674 0.92530 1.22527 0.99133 1.00090 0.93366 1.22842 0.92533 0.98254 1.02946 1.22919 0.98159 0.98922 0.83475 1.48624 1.06660 1.62358 1.15772 1.20833 0.89638 0.78179 0.81605 1.90805 1.73184 1.44029 1.36960 1.22639 0.89844 1.05469 0.84153 0.80270 1.24786 0.93921 0.93849 0.89760 1.87279 1.62464 1.54754 1.20296 1.18574 0.79332 0.78610 0.83334 1.91053 1.54945 1.71187 1.28790 1.45719 1.43813 1.34267 1.13722 0.91083 0.77539 0.91839 0.86371 0.84151 0.95784 0.89470 0.90147 0.91050 0.87437 0.90283 0.88212 0.86367 0.80742 0.86971 0.71195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.45 13.96 21.66 0.30 -56.15 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 3 Si 0.96 39.24 27.74 68.60 1.90 41.15 16 4 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 5 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.24 -8.25 6.52 99.48 0.65 -7.60 16 7 C -0.33 -19.43 10.16 84.04 0.85 -18.58 16 8 H 0.06 3.99 7.39 -2.91 -0.02 3.97 16 9 N -0.59 -28.27 5.09 -306.99 -1.56 -29.83 16 10 C 0.45 20.55 7.82 87.66 0.69 21.24 16 11 O -0.61 -33.95 15.78 -3.07 -0.05 -34.00 16 12 C 0.06 1.99 6.16 85.56 0.53 2.52 16 13 N -0.67 -19.68 5.89 -517.94 -3.05 -22.73 16 14 C 0.06 1.21 5.07 86.30 0.44 1.65 16 15 C 0.14 2.38 3.13 45.34 0.14 2.52 16 16 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 17 C -0.11 -1.43 6.27 31.78 0.20 -1.23 16 18 C -0.13 -0.45 7.08 31.99 0.23 -0.22 16 19 C 0.09 0.01 6.74 86.85 0.59 0.59 16 20 N -0.60 -5.96 3.07 -788.09 -2.42 -8.38 16 21 C 0.51 7.02 6.77 87.65 0.59 7.62 16 22 O -0.57 -14.76 15.39 -3.04 -0.05 -14.81 16 23 C 0.09 0.49 3.53 44.50 0.16 0.64 16 24 H 0.18 -0.86 6.99 -2.39 -0.02 -0.88 16 25 C 0.05 0.19 7.87 72.35 0.57 0.76 16 26 O -0.34 -5.56 11.09 -47.35 -0.53 -6.09 16 27 C 0.65 13.82 9.16 129.91 1.19 15.01 16 28 O -0.57 -17.90 18.04 19.66 0.35 -17.55 16 29 N -0.70 -9.38 5.66 -573.41 -3.24 -12.62 16 30 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 31 H 0.39 15.52 5.76 -92.71 -0.53 14.98 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.12 3.04 8.14 -2.38 -0.02 3.02 16 34 H 0.34 11.24 8.48 -89.69 -0.76 10.48 16 35 H 0.02 0.64 6.56 -2.38 -0.02 0.62 16 36 H 0.09 1.62 8.02 -2.39 -0.02 1.60 16 37 H 0.08 1.10 7.78 -2.39 -0.02 1.08 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.10 -0.33 8.14 -2.39 -0.02 -0.35 16 42 H 0.12 -0.85 6.90 -2.39 -0.02 -0.87 16 43 H 0.18 -1.16 8.14 -2.39 -0.02 -1.18 16 44 H 0.11 0.42 7.72 -2.38 -0.02 0.40 16 45 H 0.44 5.32 8.96 -92.71 -0.83 4.49 16 Total: -1.00 -96.52 375.70 -2.81 -99.33 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: -1.12 Total: 29.47 kcal Atomic # 6 Polarization: 25.57 SS G_CDS: 6.63 Total: 32.20 kcal Atomic # 7 Polarization: -119.74 SS G_CDS: -9.97 Total: -129.71 kcal Atomic # 8 Polarization: -72.18 SS G_CDS: -0.27 Total: -72.44 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 1.90 Total: 41.15 kcal Total: -96.52 -2.81 -99.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277844574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.754 kcal (2) G-P(sol) polarization free energy of solvation -96.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds