Wall clock time and date at job start Sat Apr 11 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28438 * 125.18919 * 2 1 4 4 C 1.30834 * 110.98580 * 180.31395 * 3 2 1 5 5 C 1.39808 * 107.87181 * 359.71522 * 4 3 2 6 6 Cl 1.73602 * 127.33564 * 179.97438 * 5 4 3 7 7 C 1.36749 * 125.18889 * 179.82519 * 2 1 3 8 8 C 1.47029 * 126.90417 * 359.96550 * 7 2 1 9 9 O 1.21644 * 119.99549 * 91.25365 * 8 7 2 10 10 N 1.34777 * 119.99913 * 271.26199 * 8 7 2 11 11 C 1.46498 * 119.99513 * 184.66013 * 10 8 7 12 12 C 1.53004 * 109.46849 * 179.97438 * 11 10 8 13 13 C 1.53011 * 109.44672 * 299.96391 * 12 11 10 14 14 C 1.53043 * 109.46349 * 180.02562 * 12 11 10 15 15 C 1.53187 * 109.31254 * 178.61260 * 14 12 11 16 16 N 1.46931 * 108.77660 * 54.63656 * 15 14 12 17 17 C 1.36934 * 120.63015 * 126.36702 * 16 15 14 18 18 H 1.07996 * 120.00597 * 328.77940 * 17 16 15 19 19 C 1.38817 * 119.99668 * 148.78178 * 17 16 15 20 20 N 1.31618 * 120.00050 * 349.29879 * 19 17 16 21 21 Si 1.86793 * 119.99757 * 169.29683 * 19 17 16 22 22 H 1.48501 * 109.47340 * 269.99829 * 21 19 17 23 23 H 1.48498 * 109.47478 * 30.00460 * 21 19 17 24 24 H 1.48505 * 109.46845 * 150.00186 * 21 19 17 25 25 C 1.46925 * 118.73375 * 306.63811 * 16 15 14 26 26 C 1.52762 * 109.00814 * 53.31336 * 25 16 15 27 27 H 1.08993 * 109.47450 * 275.02714 * 1 2 3 28 28 H 1.09005 * 109.46921 * 35.02410 * 1 2 3 29 29 H 1.08999 * 109.46990 * 155.02055 * 1 2 3 30 30 H 1.07995 * 126.06539 * 179.73138 * 4 3 2 31 31 H 0.96998 * 119.99991 * 4.65303 * 10 8 7 32 32 H 1.08996 * 109.47726 * 59.99604 * 11 10 8 33 33 H 1.09004 * 109.47263 * 299.99091 * 11 10 8 34 34 H 1.08996 * 109.46810 * 300.03420 * 13 12 11 35 35 H 1.08995 * 109.47198 * 60.03374 * 13 12 11 36 36 H 1.09002 * 109.46889 * 180.02562 * 13 12 11 37 37 H 1.08997 * 109.49426 * 58.65305 * 14 12 11 38 38 H 1.08998 * 109.49179 * 298.56485 * 14 12 11 39 39 H 1.08997 * 109.59029 * 294.83977 * 15 14 12 40 40 H 1.09004 * 109.58196 * 174.41592 * 15 14 12 41 41 H 0.97003 * 119.99997 * 179.97438 * 20 19 17 42 42 H 1.08996 * 109.58541 * 173.14713 * 25 16 15 43 43 H 1.09006 * 109.58944 * 293.56859 * 25 16 15 44 44 H 1.09006 * 109.56398 * 185.55214 * 26 25 16 45 45 H 1.08994 * 109.35787 * 65.49894 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2051 1.0497 0.0000 4 6 3.4735 0.7287 -0.0067 5 6 3.5629 -0.6666 -0.0049 6 17 5.0078 -1.6289 -0.0121 7 6 2.2530 -1.1176 0.0034 8 6 1.8009 -2.5166 0.0084 9 8 1.6354 -3.1060 -1.0428 10 7 1.5699 -3.1460 1.1776 11 6 1.2186 -4.5682 1.1868 12 6 1.0110 -5.0328 2.6298 13 6 2.3019 -4.8215 3.4237 14 6 0.6446 -6.5187 2.6394 15 6 0.4716 -6.9885 4.0871 16 7 -0.5102 -6.1207 4.7518 17 6 -1.5994 -6.6568 5.3852 18 1 -2.0384 -7.5741 5.0215 19 6 -2.1395 -6.0212 6.4948 20 7 -1.4902 -5.0289 7.0658 21 14 -3.7879 -6.5743 7.1776 22 1 -4.8779 -5.8103 6.5192 23 1 -3.9711 -8.0243 6.9151 24 1 -3.8251 -6.3277 8.6416 25 6 -0.3041 -4.6663 4.7187 26 6 -0.1194 -4.2228 3.2686 27 1 -0.3634 0.0900 1.0236 28 1 -0.3633 0.8416 -0.5898 29 1 -0.3633 -0.9315 -0.4340 30 1 4.3040 1.4190 -0.0123 31 1 1.6363 -2.6573 2.0128 32 1 2.0243 -5.1445 0.7323 33 1 0.2995 -4.7192 0.6205 34 1 3.1071 -5.3977 2.9679 35 1 2.5634 -3.7634 3.4170 36 1 2.1545 -5.1528 4.4516 37 1 1.4397 -7.0924 2.1631 38 1 -0.2879 -6.6669 2.0948 39 1 1.4268 -6.9258 4.6083 40 1 0.1146 -8.0184 4.0968 41 1 -1.8677 -4.5846 7.8410 42 1 -1.1726 -4.1644 5.1451 43 1 0.5867 -4.4103 5.2926 44 1 0.1319 -3.1625 3.2404 45 1 -1.0447 -4.3926 2.7183 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278607003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:45 Heat of formation + Delta-G solvation = 55.833791 kcal Electronic energy + Delta-G solvation = -28028.739490 eV Core-core repulsion = 24109.534093 eV Total energy + Delta-G solvation = -3919.205397 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.90858 -39.92611 -38.47768 -36.83955 -35.19093 -33.72562 -33.28458 -31.39998 -30.68192 -30.01488 -27.56389 -27.17428 -26.85815 -24.36649 -23.11805 -22.30322 -22.02546 -20.80716 -20.30837 -18.59870 -18.00575 -16.87272 -16.56701 -16.28214 -15.87034 -15.60270 -14.97237 -14.76612 -14.58801 -14.06843 -13.94837 -13.84120 -13.53084 -13.47204 -13.38536 -13.11593 -12.86412 -12.69133 -12.15150 -12.09781 -11.93133 -11.54195 -11.34022 -11.19149 -10.82405 -10.80906 -10.77489 -10.66411 -10.41929 -10.24597 -10.20456 -9.86855 -9.63339 -9.58085 -9.48591 -9.18566 -9.06040 -8.50341 -6.64144 -5.82534 -3.29952 1.16499 1.48065 2.04976 2.15149 2.51885 2.99711 3.33675 3.40909 3.41849 4.15313 4.30042 4.45108 4.65639 4.72222 4.92927 4.99628 5.01960 5.04906 5.09250 5.15764 5.38185 5.46240 5.68656 5.75949 5.80919 5.84314 6.02175 6.03620 6.08125 6.20964 6.23871 6.28058 6.44403 6.46128 6.54218 6.62638 6.73311 6.82854 6.95910 7.22916 7.33008 7.55634 7.64556 7.75505 7.85985 8.44035 9.19109 9.80569 10.38567 11.25461 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017098 B = 0.002786 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.218204 B =10046.235185 C =10699.133154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.264 5.264 3 N -0.271 5.271 4 C 0.024 3.976 5 C -0.116 4.116 6 Cl -0.019 7.019 7 C -0.009 4.009 8 C 0.587 3.413 9 O -0.518 6.518 10 N -0.701 5.701 11 C 0.128 3.872 12 C -0.064 4.064 13 C -0.143 4.143 14 C -0.120 4.120 15 C 0.146 3.854 16 N -0.591 5.591 17 C -0.252 4.252 18 H 0.064 0.936 19 C 0.004 3.996 20 N -0.905 5.905 21 Si 0.904 3.096 22 H -0.288 1.288 23 H -0.279 1.279 24 H -0.291 1.291 25 C 0.172 3.828 26 C -0.130 4.130 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.196 0.804 31 H 0.406 0.594 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.060 0.940 39 H 0.021 0.979 40 H 0.053 0.947 41 H 0.253 0.747 42 H 0.086 0.914 43 H 0.021 0.979 44 H 0.042 0.958 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.794 9.914 -13.199 18.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.052 5.052 3 N -0.101 5.101 4 C -0.154 4.154 5 C -0.154 4.154 6 Cl 0.010 6.990 7 C -0.140 4.140 8 C 0.369 3.631 9 O -0.393 6.393 10 N -0.353 5.353 11 C 0.005 3.995 12 C -0.064 4.064 13 C -0.200 4.200 14 C -0.160 4.160 15 C 0.019 3.981 16 N -0.314 5.314 17 C -0.382 4.382 18 H 0.081 0.919 19 C -0.194 4.194 20 N -0.549 5.549 21 Si 0.734 3.266 22 H -0.215 1.215 23 H -0.204 1.204 24 H -0.217 1.217 25 C 0.046 3.954 26 C -0.170 4.170 27 H 0.113 0.887 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.213 0.787 31 H 0.242 0.758 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.104 0.896 43 H 0.039 0.961 44 H 0.061 0.939 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.829 10.363 -13.781 18.937 hybrid contribution -0.104 -0.633 0.776 1.007 sum 7.724 9.731 -13.005 17.985 Atomic orbital electron populations 1.22349 0.71883 1.05955 1.05414 1.45527 1.07800 1.01418 1.50452 1.73254 1.03297 1.13264 1.20333 1.23526 0.93929 0.92623 1.05349 1.21240 0.87272 0.92574 1.14344 1.98363 1.33090 1.70298 1.97262 1.21311 0.90904 0.89823 1.11928 1.16838 0.78008 0.83623 0.84680 1.90872 1.50512 1.66525 1.31381 1.46094 1.68686 1.12425 1.08117 1.21699 1.00696 0.78789 0.98305 1.20714 0.96555 0.97208 0.91950 1.21951 0.95801 1.00377 1.01891 1.22001 1.00357 0.93309 1.00286 1.20925 0.92825 0.94374 0.89933 1.43973 1.24242 1.00679 1.62508 1.19184 1.04352 1.08604 1.06035 0.91874 1.25146 0.99191 0.99152 0.95936 1.69970 1.37434 1.25283 1.22253 0.86273 0.83884 0.78434 0.78044 1.21483 1.20424 1.21703 1.20698 1.00757 0.84627 0.89274 1.22203 0.96654 0.96689 1.01405 0.88692 0.87810 0.88369 0.78747 0.75796 0.91351 0.91144 0.93237 0.93721 0.90585 0.92835 0.92097 0.96079 0.92870 0.93654 0.89599 0.96120 0.93907 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 11.22 59.85 0.67 1.29 16 2 N -0.26 -2.85 3.75 -63.85 -0.24 -3.09 16 3 N -0.27 -3.01 11.89 30.61 0.36 -2.65 16 4 C 0.02 0.24 12.04 -17.39 -0.21 0.03 16 5 C -0.12 -1.35 6.89 -38.88 -0.27 -1.62 16 6 Cl -0.02 -0.21 29.24 -51.86 -1.52 -1.72 16 7 C -0.01 -0.11 6.71 -82.00 -0.55 -0.66 16 8 C 0.59 7.85 6.91 -12.70 -0.09 7.76 16 9 O -0.52 -8.58 17.11 5.24 0.09 -8.49 16 10 N -0.70 -8.53 4.94 -61.51 -0.30 -8.84 16 11 C 0.13 1.68 4.57 -4.04 -0.02 1.66 16 12 C -0.06 -0.93 0.53 -154.46 -0.08 -1.01 16 13 C -0.14 -2.02 7.54 37.16 0.28 -1.74 16 14 C -0.12 -1.89 4.90 -26.61 -0.13 -2.02 16 15 C 0.15 2.85 6.05 -3.71 -0.02 2.83 16 16 N -0.59 -13.92 2.99 -172.58 -0.52 -14.43 16 17 C -0.25 -6.65 9.58 -15.06 -0.14 -6.80 16 18 H 0.06 1.65 7.85 -52.49 -0.41 1.24 16 19 C 0.00 0.12 5.05 -17.43 -0.09 0.03 16 20 N -0.90 -25.28 11.06 55.49 0.61 -24.67 16 21 Si 0.90 21.14 29.57 -169.99 -5.03 16.11 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C 0.17 3.77 4.76 -3.93 -0.02 3.75 16 26 C -0.13 -2.18 4.73 -26.83 -0.13 -2.31 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.10 0.72 7.66 -51.93 -0.40 0.32 16 30 H 0.20 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.41 4.57 6.14 -40.82 -0.25 4.32 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.04 0.57 6.86 -51.93 -0.36 0.21 16 36 H 0.08 1.27 4.99 -51.93 -0.26 1.01 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.02 0.42 6.69 -51.93 -0.35 0.07 16 40 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 41 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.09 2.17 6.11 -51.93 -0.32 1.85 16 43 H 0.02 0.48 6.70 -51.93 -0.35 0.13 16 44 H 0.04 0.63 6.82 -51.93 -0.35 0.27 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 372.63 15.07 5.62 5.62 Total: -1.00 -31.16 372.63 -8.11 -39.27 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.40 Total: 1.69 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -0.79 Total: 1.20 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.08 Total: -53.68 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.52 Total: -1.72 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.16 -8.11 -39.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278607003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.099 kcal (2) G-P(sol) polarization free energy of solvation -31.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds