Wall clock time and date at job start Sat Apr 11 2020 05:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28438 * 125.18919 * 2 1 4 4 C 1.30834 * 110.98580 * 180.31395 * 3 2 1 5 5 C 1.39808 * 107.87181 * 359.71522 * 4 3 2 6 6 Cl 1.73602 * 127.33564 * 179.97438 * 5 4 3 7 7 C 1.36749 * 125.18889 * 179.82519 * 2 1 3 8 8 C 1.47029 * 126.90417 * 359.96550 * 7 2 1 9 9 O 1.21644 * 119.99549 * 91.25365 * 8 7 2 10 10 N 1.34777 * 119.99913 * 271.26199 * 8 7 2 11 11 C 1.46498 * 119.99513 * 184.66013 * 10 8 7 12 12 C 1.53004 * 109.46849 * 179.97438 * 11 10 8 13 13 C 1.53011 * 109.44672 * 299.96391 * 12 11 10 14 14 C 1.53043 * 109.46349 * 180.02562 * 12 11 10 15 15 C 1.53187 * 109.31254 * 178.61260 * 14 12 11 16 16 N 1.46931 * 108.77660 * 54.63656 * 15 14 12 17 17 C 1.36934 * 120.63015 * 126.36702 * 16 15 14 18 18 H 1.07996 * 120.00597 * 328.77940 * 17 16 15 19 19 C 1.38817 * 119.99668 * 148.78178 * 17 16 15 20 20 N 1.31618 * 120.00050 * 349.29879 * 19 17 16 21 21 Si 1.86793 * 119.99757 * 169.29683 * 19 17 16 22 22 H 1.48501 * 109.47340 * 269.99829 * 21 19 17 23 23 H 1.48498 * 109.47478 * 30.00460 * 21 19 17 24 24 H 1.48505 * 109.46845 * 150.00186 * 21 19 17 25 25 C 1.46925 * 118.73375 * 306.63811 * 16 15 14 26 26 C 1.52762 * 109.00814 * 53.31336 * 25 16 15 27 27 H 1.08993 * 109.47450 * 275.02714 * 1 2 3 28 28 H 1.09005 * 109.46921 * 35.02410 * 1 2 3 29 29 H 1.08999 * 109.46990 * 155.02055 * 1 2 3 30 30 H 1.07995 * 126.06539 * 179.73138 * 4 3 2 31 31 H 0.96998 * 119.99991 * 4.65303 * 10 8 7 32 32 H 1.08996 * 109.47726 * 59.99604 * 11 10 8 33 33 H 1.09004 * 109.47263 * 299.99091 * 11 10 8 34 34 H 1.08996 * 109.46810 * 300.03420 * 13 12 11 35 35 H 1.08995 * 109.47198 * 60.03374 * 13 12 11 36 36 H 1.09002 * 109.46889 * 180.02562 * 13 12 11 37 37 H 1.08997 * 109.49426 * 58.65305 * 14 12 11 38 38 H 1.08998 * 109.49179 * 298.56485 * 14 12 11 39 39 H 1.08997 * 109.59029 * 294.83977 * 15 14 12 40 40 H 1.09004 * 109.58196 * 174.41592 * 15 14 12 41 41 H 0.97003 * 119.99997 * 179.97438 * 20 19 17 42 42 H 1.08996 * 109.58541 * 173.14713 * 25 16 15 43 43 H 1.09006 * 109.58944 * 293.56859 * 25 16 15 44 44 H 1.09006 * 109.56398 * 185.55214 * 26 25 16 45 45 H 1.08994 * 109.35787 * 65.49894 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2051 1.0497 0.0000 4 6 3.4735 0.7287 -0.0067 5 6 3.5629 -0.6666 -0.0049 6 17 5.0078 -1.6289 -0.0121 7 6 2.2530 -1.1176 0.0034 8 6 1.8009 -2.5166 0.0084 9 8 1.6354 -3.1060 -1.0428 10 7 1.5699 -3.1460 1.1776 11 6 1.2186 -4.5682 1.1868 12 6 1.0110 -5.0328 2.6298 13 6 2.3019 -4.8215 3.4237 14 6 0.6446 -6.5187 2.6394 15 6 0.4716 -6.9885 4.0871 16 7 -0.5102 -6.1207 4.7518 17 6 -1.5994 -6.6568 5.3852 18 1 -2.0384 -7.5741 5.0215 19 6 -2.1395 -6.0212 6.4948 20 7 -1.4902 -5.0289 7.0658 21 14 -3.7879 -6.5743 7.1776 22 1 -4.8779 -5.8103 6.5192 23 1 -3.9711 -8.0243 6.9151 24 1 -3.8251 -6.3277 8.6416 25 6 -0.3041 -4.6663 4.7187 26 6 -0.1194 -4.2228 3.2686 27 1 -0.3634 0.0900 1.0236 28 1 -0.3633 0.8416 -0.5898 29 1 -0.3633 -0.9315 -0.4340 30 1 4.3040 1.4190 -0.0123 31 1 1.6363 -2.6573 2.0128 32 1 2.0243 -5.1445 0.7323 33 1 0.2995 -4.7192 0.6205 34 1 3.1071 -5.3977 2.9679 35 1 2.5634 -3.7634 3.4170 36 1 2.1545 -5.1528 4.4516 37 1 1.4397 -7.0924 2.1631 38 1 -0.2879 -6.6669 2.0948 39 1 1.4268 -6.9258 4.6083 40 1 0.1146 -8.0184 4.0968 41 1 -1.8677 -4.5846 7.8410 42 1 -1.1726 -4.1644 5.1451 43 1 0.5867 -4.4103 5.2926 44 1 0.1319 -3.1625 3.2404 45 1 -1.0447 -4.3926 2.7183 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278607003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:44 Heat of formation + Delta-G solvation = 36.532739 kcal Electronic energy + Delta-G solvation = -28029.576446 eV Core-core repulsion = 24109.534093 eV Total energy + Delta-G solvation = -3920.042353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.71611 -41.08006 -39.80146 -37.67875 -36.65601 -34.79142 -34.41671 -32.85231 -31.87036 -31.58715 -28.74128 -28.25317 -27.94085 -25.97830 -24.32444 -23.72352 -22.88146 -22.30851 -21.25904 -19.72627 -19.36539 -18.17816 -17.77143 -17.25047 -16.83998 -16.79882 -16.58394 -15.98976 -15.55581 -15.42561 -15.37227 -15.02899 -14.88195 -14.67411 -14.44872 -14.11202 -14.06358 -13.68514 -13.43735 -13.16818 -12.93241 -12.91079 -12.79327 -12.67839 -12.58326 -12.33727 -12.26984 -11.88338 -11.79746 -11.64201 -11.56067 -11.44036 -11.08911 -11.03291 -10.49697 -10.42909 -10.25830 -9.88499 -8.55830 -7.84200 -5.33767 0.30288 0.66576 1.09974 1.36840 1.46821 1.47973 1.56355 1.63988 2.07768 2.51807 3.30518 3.35863 3.46407 3.73187 3.78370 3.85571 3.90951 3.95406 4.21241 4.24336 4.33297 4.41037 4.51742 4.53871 4.61930 4.71085 4.75881 4.84095 4.87129 4.97177 5.07801 5.10198 5.11919 5.19358 5.30998 5.34112 5.42659 5.48014 5.51103 5.58244 5.68563 5.88501 6.22107 6.44819 6.76116 6.84696 7.20483 7.91609 8.42748 9.20702 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017098 B = 0.002786 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.218204 B =10046.235185 C =10699.133154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.263 5.263 3 N -0.281 5.281 4 C 0.026 3.974 5 C -0.126 4.126 6 Cl -0.018 7.018 7 C -0.027 4.027 8 C 0.596 3.404 9 O -0.552 6.552 10 N -0.692 5.692 11 C 0.139 3.861 12 C -0.053 4.053 13 C -0.138 4.138 14 C -0.111 4.111 15 C 0.142 3.858 16 N -0.610 5.610 17 C -0.261 4.261 18 H 0.061 0.939 19 C -0.047 4.047 20 N -0.933 5.933 21 Si 0.964 3.036 22 H -0.286 1.286 23 H -0.271 1.271 24 H -0.295 1.295 25 C 0.180 3.820 26 C -0.117 4.117 27 H 0.109 0.891 28 H 0.121 0.879 29 H 0.096 0.904 30 H 0.224 0.776 31 H 0.412 0.588 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.046 0.954 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.021 0.979 40 H 0.047 0.953 41 H 0.248 0.752 42 H 0.047 0.953 43 H 0.004 0.996 44 H 0.066 0.934 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.391 10.446 -14.523 20.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.051 5.051 3 N -0.112 5.112 4 C -0.151 4.151 5 C -0.164 4.164 6 Cl 0.010 6.990 7 C -0.158 4.158 8 C 0.379 3.621 9 O -0.429 6.429 10 N -0.344 5.344 11 C 0.016 3.984 12 C -0.054 4.054 13 C -0.195 4.195 14 C -0.151 4.151 15 C 0.017 3.983 16 N -0.334 5.334 17 C -0.391 4.391 18 H 0.079 0.921 19 C -0.242 4.242 20 N -0.579 5.579 21 Si 0.792 3.208 22 H -0.212 1.212 23 H -0.196 1.196 24 H -0.222 1.222 25 C 0.055 3.945 26 C -0.156 4.156 27 H 0.127 0.873 28 H 0.140 0.860 29 H 0.115 0.885 30 H 0.240 0.760 31 H 0.249 0.751 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.039 0.961 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.022 0.978 44 H 0.084 0.916 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.431 10.893 -15.111 20.447 hybrid contribution -0.255 -0.809 1.198 1.468 sum 8.176 10.084 -13.912 19.028 Atomic orbital electron populations 1.22634 0.70330 1.06718 1.06742 1.45828 1.08719 1.00839 1.49718 1.73265 1.03818 1.13406 1.20684 1.24019 0.94391 0.92523 1.04189 1.21437 0.87137 0.93256 1.14549 1.98361 1.32972 1.70370 1.97262 1.21210 0.91567 0.89621 1.13374 1.16880 0.77144 0.83925 0.84185 1.90856 1.52127 1.67439 1.32508 1.45992 1.68094 1.12084 1.08222 1.21501 1.00990 0.79310 0.96620 1.20571 0.95814 0.96075 0.92937 1.21881 0.95932 1.01609 1.00072 1.21880 1.01321 0.94423 0.97438 1.21055 0.91664 0.93682 0.91910 1.44239 1.24584 1.01779 1.62779 1.19477 1.05248 1.08421 1.06002 0.92106 1.25825 1.02249 0.99629 0.96542 1.70127 1.38752 1.26439 1.22598 0.85323 0.80283 0.78309 0.76847 1.21245 1.19591 1.22211 1.20479 0.98137 0.83810 0.92077 1.21988 0.97446 0.98409 0.97727 0.87265 0.86024 0.88512 0.75958 0.75078 0.90480 0.91388 0.91442 0.92288 0.93450 0.89845 0.92548 0.96144 0.93399 0.94237 0.93453 0.97826 0.91569 0.93344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.96 11.22 127.77 1.43 2.39 16 2 N -0.26 -5.19 3.75 -355.93 -1.34 -6.53 16 3 N -0.28 -5.68 11.89 -57.07 -0.68 -6.36 16 4 C 0.03 0.47 12.04 85.22 1.03 1.49 16 5 C -0.13 -2.68 6.89 22.72 0.16 -2.52 16 6 Cl -0.02 -0.37 29.24 -2.72 -0.08 -0.45 16 7 C -0.03 -0.60 6.71 40.76 0.27 -0.33 16 8 C 0.60 14.90 6.91 86.55 0.60 15.50 16 9 O -0.55 -17.50 17.11 -4.17 -0.07 -17.58 16 10 N -0.69 -15.28 4.94 -466.76 -2.31 -17.58 16 11 C 0.14 3.28 4.57 86.38 0.39 3.67 16 12 C -0.05 -1.45 0.53 -52.15 -0.03 -1.48 16 13 C -0.14 -3.60 7.54 71.99 0.54 -3.06 16 14 C -0.11 -3.30 4.90 30.67 0.15 -3.15 16 15 C 0.14 5.49 6.05 86.36 0.52 6.02 16 16 N -0.61 -29.10 2.99 -699.92 -2.09 -31.19 16 17 C -0.26 -13.98 9.58 84.04 0.81 -13.18 16 18 H 0.06 3.22 7.85 -2.91 -0.02 3.19 16 19 C -0.05 -2.56 5.05 84.86 0.43 -2.13 16 20 N -0.93 -53.60 11.06 21.65 0.24 -53.36 16 21 Si 0.96 44.07 29.57 68.60 2.03 46.10 16 22 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 25 C 0.18 8.05 4.76 86.22 0.41 8.46 16 26 C -0.12 -3.80 4.73 30.53 0.14 -3.66 16 27 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.10 1.28 7.66 -2.39 -0.02 1.26 16 30 H 0.22 2.44 8.06 -2.91 -0.02 2.41 16 31 H 0.41 8.24 6.14 -92.71 -0.57 7.67 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 35 H 0.06 1.36 6.86 -2.39 -0.02 1.35 16 36 H 0.05 1.54 4.99 -2.39 -0.01 1.52 16 37 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.02 0.80 6.69 -2.39 -0.02 0.79 16 40 H 0.05 1.86 7.93 -2.38 -0.02 1.84 16 41 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 42 H 0.05 2.47 6.11 -2.39 -0.01 2.46 16 43 H 0.00 0.18 6.70 -2.38 -0.02 0.16 16 44 H 0.07 1.83 6.82 -2.38 -0.02 1.82 16 45 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -68.12 372.63 3.01 -65.11 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.45 Total: 13.81 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 6.86 Total: 8.03 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -6.17 Total: -115.02 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.07 Total: -17.58 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -0.08 Total: -0.45 kcal Total: -68.12 3.01 -65.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278607003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.642 kcal (2) G-P(sol) polarization free energy of solvation -68.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds