Wall clock time and date at job start Sat Apr 11 2020 06:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00349 * 2 1 4 4 C 1.52994 * 109.47596 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47257 * 64.99611 * 4 3 2 6 6 C 1.36930 * 120.00339 * 270.00104 * 5 4 3 7 7 H 1.08001 * 120.00126 * 142.63486 * 6 5 4 8 8 C 1.38814 * 120.00220 * 322.64634 * 6 5 4 9 9 N 1.31612 * 120.00439 * 157.14092 * 8 6 5 10 10 Si 1.86806 * 119.99658 * 337.14096 * 8 6 5 11 11 H 1.48500 * 109.47220 * 95.36525 * 10 8 6 12 12 H 1.48492 * 109.46923 * 215.36953 * 10 8 6 13 13 H 1.48506 * 109.47045 * 335.36849 * 10 8 6 14 14 C 1.46505 * 119.99685 * 90.00139 * 5 4 3 15 15 C 1.53002 * 109.47258 * 266.84781 * 14 5 4 16 16 N 1.46498 * 109.47218 * 179.05656 * 15 14 5 17 17 C 1.34781 * 119.99587 * 180.02562 * 16 15 14 18 18 O 1.21507 * 120.00206 * 359.97438 * 17 16 15 19 19 C 1.48047 * 119.99521 * 179.97438 * 17 16 15 20 20 C 1.35801 * 119.57516 * 179.72301 * 19 17 16 21 21 C 1.42185 * 118.89700 * 179.72543 * 20 19 17 22 22 O 1.22125 * 120.91627 * 180.28364 * 21 20 19 23 23 C 1.42007 * 118.16276 * 0.53531 * 21 20 19 24 24 O 1.36022 * 120.48688 * 179.72300 * 23 21 20 25 25 C 1.42897 * 117.00143 * 180.02562 * 24 23 21 26 26 C 1.35496 * 119.02997 * 359.74703 * 23 21 20 27 27 O 1.33832 * 121.01332 * 359.97438 * 26 23 21 28 28 H 1.08998 * 109.47035 * 59.99976 * 1 2 3 29 29 H 1.08997 * 109.47162 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47008 * 299.99824 * 1 2 3 31 31 H 1.09001 * 109.47161 * 59.99466 * 3 2 1 32 32 H 1.09009 * 109.47102 * 300.00287 * 3 2 1 33 33 H 1.09002 * 109.47018 * 305.00117 * 4 3 2 34 34 H 1.09005 * 109.47346 * 185.00010 * 4 3 2 35 35 H 0.96998 * 120.00269 * 179.97438 * 9 8 6 36 36 H 1.08999 * 109.46882 * 146.85041 * 14 5 4 37 37 H 1.08995 * 109.47401 * 26.84989 * 14 5 4 38 38 H 1.09004 * 109.47065 * 59.05159 * 15 14 5 39 39 H 1.09004 * 109.47154 * 299.05605 * 15 14 5 40 40 H 0.96996 * 120.00036 * 359.97438 * 16 15 14 41 41 H 1.08002 * 120.54941 * 359.97438 * 20 19 17 42 42 H 1.08997 * 109.47555 * 59.99648 * 25 24 23 43 43 H 1.08999 * 109.46891 * 179.97438 * 25 24 23 44 44 H 1.09002 * 109.46802 * 299.99479 * 25 24 23 45 45 H 1.07996 * 119.49002 * 179.97438 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0968 -0.7970 -1.3369 7 1 3.8247 -1.3081 -2.2486 8 6 4.5691 -1.5204 -0.2503 9 7 4.2798 -2.7991 -0.1349 10 14 5.6155 -0.6787 1.0483 11 1 4.7512 -0.2434 2.1747 12 1 6.6411 -1.6284 1.5495 13 1 6.2860 0.5051 0.4528 14 6 4.2864 1.4006 -2.4148 15 6 3.0425 1.5318 -3.2960 16 7 3.3468 2.3864 -4.4463 17 6 2.3943 2.6453 -5.3640 18 8 1.2834 2.1696 -5.2376 19 6 2.7016 3.5095 -6.5262 20 6 1.7371 3.7601 -7.4487 21 6 2.0463 4.5968 -8.5560 22 8 1.2055 4.8508 -9.4046 23 6 3.3613 5.1244 -8.6508 24 8 3.7100 5.9255 -9.6934 25 6 5.0524 6.4146 -9.7151 26 6 4.2638 4.8179 -7.6878 27 8 3.9322 4.0308 -6.6574 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5681 0.8409 34 1 3.9785 2.1765 0.0889 35 1 4.6101 -3.3046 0.6242 36 1 5.0911 0.9408 -2.9885 37 1 4.5990 2.3889 -2.0781 38 1 2.2325 1.9760 -2.7173 39 1 2.7397 0.5450 -3.6465 40 1 4.2334 2.7665 -4.5470 41 1 0.7505 3.3343 -7.3410 42 1 5.7451 5.5737 -9.7474 43 1 5.1975 7.0386 -10.5969 44 1 5.2387 7.0045 -8.8175 45 1 5.2661 5.2148 -7.7527 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279044144.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:10 Heat of formation + Delta-G solvation = -98.377805 kcal Electronic energy + Delta-G solvation = -29524.524315 eV Core-core repulsion = 25125.629885 eV Total energy + Delta-G solvation = -4398.894429 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.48646 -39.98464 -39.34973 -38.45580 -37.54155 -36.08036 -34.58686 -32.91965 -31.95643 -31.58534 -29.86909 -28.36333 -27.96445 -25.68897 -25.48575 -24.31195 -23.70761 -22.24789 -21.23668 -20.67185 -19.40700 -19.09056 -18.21984 -17.22848 -16.89478 -16.43532 -16.19017 -15.98855 -15.79204 -15.50648 -15.34216 -15.17796 -15.06994 -14.74879 -14.72412 -14.31742 -14.25608 -13.91770 -13.72275 -13.40073 -13.07262 -12.65843 -12.53331 -12.04471 -11.97679 -11.95611 -11.76578 -11.27060 -11.10098 -10.80217 -10.69332 -10.61605 -10.34538 -10.16219 -10.10443 -9.80995 -9.60569 -9.13868 -8.82009 -8.68775 -8.48727 -6.95236 -5.94495 -3.38105 0.06912 0.55373 1.68919 2.49144 2.55403 2.84795 3.10694 3.31388 3.45199 3.47967 3.79390 3.97861 4.20451 4.49166 4.53389 4.56735 4.58204 4.74116 4.86149 4.92023 4.97566 5.09144 5.39160 5.49779 5.54417 5.61309 5.72014 5.78598 5.87217 5.95767 6.03131 6.08652 6.14782 6.20510 6.26311 6.41212 6.45368 6.53240 6.66077 6.67508 7.25532 7.30171 7.83307 7.92852 8.08041 8.39394 8.93682 9.72694 10.05157 11.20958 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017700 B = 0.002376 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.502850 B =11781.636084 C =12697.659749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.346 6.346 3 C 0.044 3.956 4 C 0.131 3.869 5 N -0.590 5.590 6 C -0.262 4.262 7 H 0.077 0.923 8 C 0.047 3.953 9 N -0.891 5.891 10 Si 0.874 3.126 11 H -0.286 1.286 12 H -0.303 1.303 13 H -0.271 1.271 14 C 0.139 3.861 15 C 0.090 3.910 16 N -0.700 5.700 17 C 0.569 3.431 18 O -0.500 6.500 19 C 0.096 3.904 20 C -0.231 4.231 21 C 0.408 3.592 22 O -0.458 6.458 23 C -0.052 4.052 24 O -0.283 6.283 25 C 0.013 3.987 26 C -0.004 4.004 27 O -0.195 6.195 28 H 0.031 0.969 29 H 0.079 0.921 30 H 0.025 0.975 31 H 0.028 0.972 32 H 0.038 0.962 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.262 0.738 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.406 0.594 41 H 0.179 0.821 42 H 0.059 0.941 43 H 0.108 0.892 44 H 0.059 0.941 45 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.973 18.398 -11.457 21.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C -0.036 4.036 4 C 0.005 3.995 5 N -0.311 5.311 6 C -0.390 4.390 7 H 0.095 0.905 8 C -0.154 4.154 9 N -0.532 5.532 10 Si 0.704 3.296 11 H -0.214 1.214 12 H -0.231 1.231 13 H -0.196 1.196 14 C 0.012 3.988 15 C -0.034 4.034 16 N -0.350 5.350 17 C 0.351 3.649 18 O -0.376 6.376 19 C 0.044 3.956 20 C -0.253 4.253 21 C 0.294 3.706 22 O -0.341 6.341 23 C -0.099 4.099 24 O -0.196 6.196 25 C -0.082 4.082 26 C -0.070 4.070 27 O -0.098 6.098 28 H 0.049 0.951 29 H 0.097 0.903 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.241 0.759 41 H 0.196 0.804 42 H 0.078 0.922 43 H 0.126 0.874 44 H 0.077 0.923 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 1.976 17.807 -11.642 21.366 hybrid contribution 0.910 0.951 0.722 1.501 sum 2.886 18.757 -10.920 21.895 Atomic orbital electron populations 1.22654 0.83647 1.01971 0.98357 1.88297 1.17023 1.26258 1.94799 1.23324 0.97217 0.85312 0.97713 1.21414 0.90512 0.96621 0.90908 1.43896 1.76110 1.03873 1.07221 1.18547 1.38944 0.79442 1.02105 0.90542 1.25313 0.97694 0.94803 0.97562 1.69884 1.44436 1.08370 1.30464 0.87000 0.81123 0.79286 0.82163 1.21425 1.23070 1.19624 1.21003 0.93464 0.94744 0.89614 1.22676 1.01489 0.94141 0.85139 1.46078 1.14275 1.50184 1.24512 1.17380 0.85637 0.80782 0.81148 1.90912 1.21533 1.50483 1.74654 1.22646 0.82558 0.93903 0.96458 1.23170 1.02802 1.03878 0.95401 1.17105 0.86022 0.81033 0.86391 1.90851 1.49468 1.54420 1.39376 1.21045 0.97063 1.00030 0.91811 1.86295 1.30759 1.61457 1.41118 1.23243 0.81458 0.99390 1.04066 1.23921 1.00126 0.95768 0.87174 1.82913 1.29786 1.54293 1.42787 0.95068 0.90259 0.95606 0.95379 0.94379 0.91695 0.92632 0.92846 0.91791 0.93719 0.91438 0.90263 0.75928 0.80353 0.92221 0.87387 0.92269 0.78009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.35 -7.56 10.18 -35.23 -0.36 -7.92 16 3 C 0.04 0.81 6.28 37.15 0.23 1.05 16 4 C 0.13 2.63 4.98 -4.04 -0.02 2.61 16 5 N -0.59 -12.66 2.06 -173.24 -0.36 -13.02 16 6 C -0.26 -6.90 9.42 -15.06 -0.14 -7.04 16 7 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 8 C 0.05 1.32 5.30 -17.43 -0.09 1.23 16 9 N -0.89 -26.70 13.97 55.49 0.78 -25.93 16 10 Si 0.87 21.27 25.07 -169.99 -4.26 17.01 16 11 H -0.29 -6.88 6.66 56.52 0.38 -6.50 16 12 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 13 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 14 C 0.14 2.29 5.83 -4.04 -0.02 2.27 16 15 C 0.09 1.40 5.99 -4.04 -0.02 1.38 16 16 N -0.70 -8.37 5.55 -61.19 -0.34 -8.71 16 17 C 0.57 7.41 7.80 -12.24 -0.10 7.32 16 18 O -0.50 -8.35 16.26 5.36 0.09 -8.27 16 19 C 0.10 1.02 6.90 -36.43 -0.25 0.77 16 20 C -0.23 -2.70 9.56 -38.94 -0.37 -3.08 16 21 C 0.41 5.23 6.82 -36.62 -0.25 4.98 16 22 O -0.46 -7.47 17.74 -10.43 -0.19 -7.66 16 23 C -0.05 -0.51 6.72 -39.12 -0.26 -0.78 16 24 O -0.28 -2.74 10.35 -35.05 -0.36 -3.10 16 25 C 0.01 0.05 9.82 101.05 0.99 1.05 16 26 C 0.00 -0.03 10.43 29.75 0.31 0.28 16 27 O -0.20 -1.58 9.06 6.99 0.06 -1.52 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.04 0.66 6.30 -51.92 -0.33 0.33 16 33 H 0.07 1.48 3.28 -51.93 -0.17 1.31 16 34 H 0.06 0.93 7.87 -51.93 -0.41 0.52 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.06 1.04 8.06 -51.93 -0.42 0.62 16 37 H 0.04 0.61 7.86 -51.93 -0.41 0.21 16 38 H 0.07 1.11 6.30 -51.93 -0.33 0.78 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.41 3.62 7.87 -40.82 -0.32 3.30 16 41 H 0.18 2.15 7.57 -52.49 -0.40 1.75 16 42 H 0.06 0.15 7.67 -51.93 -0.40 -0.25 16 43 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.06 0.14 7.67 -51.93 -0.40 -0.26 16 45 H 0.20 0.51 6.21 -52.49 -0.33 0.19 16 LS Contribution 379.84 15.07 5.72 5.72 Total: -1.00 -35.84 379.84 -4.12 -39.97 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -6.02 Total: -0.25 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 1.11 Total: 13.67 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.08 Total: -47.65 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.76 Total: -28.46 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.26 Total: 17.01 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.84 -4.12 -39.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279044144.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.412 kcal (2) G-P(sol) polarization free energy of solvation -35.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds