Wall clock time and date at job start Sat Apr 11 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00349 * 2 1 4 4 C 1.52994 * 109.47596 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47257 * 64.99611 * 4 3 2 6 6 C 1.36930 * 120.00339 * 270.00104 * 5 4 3 7 7 H 1.08001 * 120.00126 * 142.63486 * 6 5 4 8 8 C 1.38814 * 120.00220 * 322.64634 * 6 5 4 9 9 N 1.31612 * 120.00439 * 157.14092 * 8 6 5 10 10 Si 1.86806 * 119.99658 * 337.14096 * 8 6 5 11 11 H 1.48500 * 109.47220 * 95.36525 * 10 8 6 12 12 H 1.48492 * 109.46923 * 215.36953 * 10 8 6 13 13 H 1.48506 * 109.47045 * 335.36849 * 10 8 6 14 14 C 1.46505 * 119.99685 * 90.00139 * 5 4 3 15 15 C 1.53002 * 109.47258 * 266.84781 * 14 5 4 16 16 N 1.46498 * 109.47218 * 179.05656 * 15 14 5 17 17 C 1.34781 * 119.99587 * 180.02562 * 16 15 14 18 18 O 1.21507 * 120.00206 * 359.97438 * 17 16 15 19 19 C 1.48047 * 119.99521 * 179.97438 * 17 16 15 20 20 C 1.35801 * 119.57516 * 179.72301 * 19 17 16 21 21 C 1.42185 * 118.89700 * 179.72543 * 20 19 17 22 22 O 1.22125 * 120.91627 * 180.28364 * 21 20 19 23 23 C 1.42007 * 118.16276 * 0.53531 * 21 20 19 24 24 O 1.36022 * 120.48688 * 179.72300 * 23 21 20 25 25 C 1.42897 * 117.00143 * 180.02562 * 24 23 21 26 26 C 1.35496 * 119.02997 * 359.74703 * 23 21 20 27 27 O 1.33832 * 121.01332 * 359.97438 * 26 23 21 28 28 H 1.08998 * 109.47035 * 59.99976 * 1 2 3 29 29 H 1.08997 * 109.47162 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47008 * 299.99824 * 1 2 3 31 31 H 1.09001 * 109.47161 * 59.99466 * 3 2 1 32 32 H 1.09009 * 109.47102 * 300.00287 * 3 2 1 33 33 H 1.09002 * 109.47018 * 305.00117 * 4 3 2 34 34 H 1.09005 * 109.47346 * 185.00010 * 4 3 2 35 35 H 0.96998 * 120.00269 * 179.97438 * 9 8 6 36 36 H 1.08999 * 109.46882 * 146.85041 * 14 5 4 37 37 H 1.08995 * 109.47401 * 26.84989 * 14 5 4 38 38 H 1.09004 * 109.47065 * 59.05159 * 15 14 5 39 39 H 1.09004 * 109.47154 * 299.05605 * 15 14 5 40 40 H 0.96996 * 120.00036 * 359.97438 * 16 15 14 41 41 H 1.08002 * 120.54941 * 359.97438 * 20 19 17 42 42 H 1.08997 * 109.47555 * 59.99648 * 25 24 23 43 43 H 1.08999 * 109.46891 * 179.97438 * 25 24 23 44 44 H 1.09002 * 109.46802 * 299.99479 * 25 24 23 45 45 H 1.07996 * 119.49002 * 179.97438 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0968 -0.7970 -1.3369 7 1 3.8247 -1.3081 -2.2486 8 6 4.5691 -1.5204 -0.2503 9 7 4.2798 -2.7991 -0.1349 10 14 5.6155 -0.6787 1.0483 11 1 4.7512 -0.2434 2.1747 12 1 6.6411 -1.6284 1.5495 13 1 6.2860 0.5051 0.4528 14 6 4.2864 1.4006 -2.4148 15 6 3.0425 1.5318 -3.2960 16 7 3.3468 2.3864 -4.4463 17 6 2.3943 2.6453 -5.3640 18 8 1.2834 2.1696 -5.2376 19 6 2.7016 3.5095 -6.5262 20 6 1.7371 3.7601 -7.4487 21 6 2.0463 4.5968 -8.5560 22 8 1.2055 4.8508 -9.4046 23 6 3.3613 5.1244 -8.6508 24 8 3.7100 5.9255 -9.6934 25 6 5.0524 6.4146 -9.7151 26 6 4.2638 4.8179 -7.6878 27 8 3.9322 4.0308 -6.6574 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5681 0.8409 34 1 3.9785 2.1765 0.0889 35 1 4.6101 -3.3046 0.6242 36 1 5.0911 0.9408 -2.9885 37 1 4.5990 2.3889 -2.0781 38 1 2.2325 1.9760 -2.7173 39 1 2.7397 0.5450 -3.6465 40 1 4.2334 2.7665 -4.5470 41 1 0.7505 3.3343 -7.3410 42 1 5.7451 5.5737 -9.7474 43 1 5.1975 7.0386 -10.5969 44 1 5.2387 7.0045 -8.8175 45 1 5.2661 5.2148 -7.7527 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279044144.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:09 Heat of formation + Delta-G solvation = -127.110123 kcal Electronic energy + Delta-G solvation = -29525.770241 eV Core-core repulsion = 25125.629885 eV Total energy + Delta-G solvation = -4400.140356 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.31009 -40.98004 -40.21823 -39.27355 -39.06391 -37.56191 -35.95469 -33.87799 -33.68229 -32.63939 -31.20852 -29.56281 -28.67344 -27.15244 -26.63945 -25.26887 -25.01673 -23.62353 -22.42511 -22.15825 -20.20870 -19.89586 -19.13523 -18.70261 -18.00189 -17.73410 -17.29276 -17.03071 -16.99418 -16.70222 -16.33638 -16.24775 -16.10454 -15.96325 -15.75644 -15.44497 -15.32729 -15.25418 -15.00808 -14.90365 -14.37514 -14.17102 -13.76363 -13.59483 -13.18631 -12.90445 -12.56276 -12.45523 -12.43814 -12.40326 -12.27037 -11.87077 -11.78844 -11.64618 -11.38042 -11.12540 -10.97078 -10.53319 -10.39998 -10.17984 -9.42629 -8.75347 -8.04591 -5.43941 -0.87351 -0.18304 0.83801 1.40301 1.46850 1.49045 1.59612 1.76188 2.02184 2.20204 2.54869 3.07561 3.15585 3.18930 3.23590 3.33151 3.60894 3.82473 4.16641 4.20092 4.21708 4.26045 4.32494 4.38592 4.41598 4.42310 4.54334 4.59393 4.65944 4.68499 4.76508 4.78719 4.79495 4.87882 5.01573 5.03169 5.16801 5.34632 5.64747 5.97146 6.04641 6.26725 6.30112 6.45451 6.58966 6.83896 7.09040 7.74522 8.11152 9.15488 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017700 B = 0.002376 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.502850 B =11781.636084 C =12697.659749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.397 6.397 3 C 0.042 3.958 4 C 0.122 3.878 5 N -0.602 5.602 6 C -0.237 4.237 7 H 0.031 0.969 8 C -0.016 4.016 9 N -0.950 5.950 10 Si 0.943 3.057 11 H -0.283 1.283 12 H -0.318 1.318 13 H -0.242 1.242 14 C 0.140 3.860 15 C 0.108 3.892 16 N -0.682 5.682 17 C 0.572 3.428 18 O -0.541 6.541 19 C 0.116 3.884 20 C -0.240 4.240 21 C 0.397 3.603 22 O -0.517 6.517 23 C -0.075 4.075 24 O -0.315 6.315 25 C 0.000 4.000 26 C 0.038 3.962 27 O -0.176 6.176 28 H 0.039 0.961 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.037 0.963 34 H 0.102 0.898 35 H 0.257 0.743 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.039 0.961 40 H 0.425 0.575 41 H 0.165 0.835 42 H 0.081 0.919 43 H 0.117 0.883 44 H 0.083 0.917 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.778 22.118 -10.762 25.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.316 6.316 3 C -0.037 4.037 4 C -0.003 4.003 5 N -0.324 5.324 6 C -0.366 4.366 7 H 0.049 0.951 8 C -0.212 4.212 9 N -0.594 5.594 10 Si 0.772 3.228 11 H -0.211 1.211 12 H -0.248 1.248 13 H -0.166 1.166 14 C 0.013 3.987 15 C -0.018 4.018 16 N -0.333 5.333 17 C 0.355 3.645 18 O -0.420 6.420 19 C 0.063 3.937 20 C -0.262 4.262 21 C 0.288 3.712 22 O -0.405 6.405 23 C -0.123 4.123 24 O -0.229 6.229 25 C -0.093 4.093 26 C -0.027 4.027 27 O -0.077 6.077 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.120 0.880 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.264 0.736 41 H 0.183 0.817 42 H 0.099 0.901 43 H 0.135 0.865 44 H 0.101 0.899 45 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 4.838 21.608 -10.951 24.703 hybrid contribution 0.051 -0.147 0.422 0.450 sum 4.889 21.462 -10.528 24.400 Atomic orbital electron populations 1.22760 0.81649 1.02330 0.99978 1.88221 1.19515 1.28643 1.95202 1.23385 0.96255 0.84434 0.99591 1.21607 0.91759 0.98031 0.88914 1.43970 1.76647 1.02532 1.09264 1.18325 1.36384 0.81961 0.99969 0.95099 1.25965 0.99503 0.95296 1.00471 1.70050 1.46989 1.10553 1.31844 0.85883 0.78800 0.78563 0.79541 1.21093 1.24770 1.16552 1.21171 0.93449 0.96047 0.87994 1.22192 1.01034 0.92703 0.85825 1.45768 1.15058 1.49266 1.23253 1.17529 0.85051 0.80424 0.81474 1.90905 1.23352 1.52064 1.75652 1.21974 0.83251 0.93448 0.95007 1.23051 1.02839 1.04380 0.95894 1.17517 0.87257 0.80668 0.85733 1.90819 1.51275 1.57065 1.41339 1.20741 0.96251 1.01728 0.93548 1.86262 1.33833 1.61651 1.41177 1.23637 0.79277 1.00607 1.05823 1.24782 1.01003 0.92464 0.84499 1.82959 1.27982 1.53646 1.43140 0.94256 0.90734 0.92962 0.92531 0.93207 0.94486 0.88040 0.93447 0.91623 0.89068 0.91960 0.94296 0.73589 0.81716 0.90074 0.86481 0.89901 0.72589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 11.01 113.37 1.25 2.23 16 2 O -0.40 -17.18 10.18 -148.98 -1.52 -18.70 16 3 C 0.04 1.45 6.28 71.98 0.45 1.90 16 4 C 0.12 4.48 4.98 86.38 0.43 4.91 16 5 N -0.60 -24.67 2.06 -701.99 -1.45 -26.12 16 6 C -0.24 -12.62 9.42 84.04 0.79 -11.83 16 7 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 8 C -0.02 -0.93 5.30 84.86 0.45 -0.48 16 9 N -0.95 -59.35 13.97 21.65 0.30 -59.05 16 10 Si 0.94 43.94 25.07 68.60 1.72 45.66 16 11 H -0.28 -12.90 6.66 99.48 0.66 -12.24 16 12 H -0.32 -15.45 7.11 99.48 0.71 -14.75 16 13 H -0.24 -9.99 7.11 99.48 0.71 -9.28 16 14 C 0.14 4.12 5.83 86.38 0.50 4.62 16 15 C 0.11 3.18 5.99 86.38 0.52 3.70 16 16 N -0.68 -14.41 5.55 -465.78 -2.59 -16.99 16 17 C 0.57 14.09 7.80 86.85 0.68 14.76 16 18 O -0.54 -18.22 16.26 -3.74 -0.06 -18.28 16 19 C 0.12 2.23 6.90 24.31 0.17 2.40 16 20 C -0.24 -5.66 9.56 22.68 0.22 -5.45 16 21 C 0.40 10.34 6.82 24.19 0.16 10.51 16 22 O -0.52 -18.00 17.74 8.84 0.16 -17.84 16 23 C -0.08 -1.34 6.72 22.57 0.15 -1.19 16 24 O -0.31 -5.55 10.35 -79.24 -0.82 -6.37 16 25 C 0.00 0.00 9.82 113.37 1.11 1.11 16 26 C 0.04 0.33 10.43 67.19 0.70 1.03 16 27 O -0.18 -2.08 9.06 2.10 0.02 -2.06 16 28 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 1.59 6.30 -2.38 -0.02 1.57 16 33 H 0.04 1.59 3.28 -2.39 -0.01 1.59 16 34 H 0.10 2.79 7.87 -2.38 -0.02 2.77 16 35 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 36 H 0.07 1.94 8.06 -2.39 -0.02 1.92 16 37 H 0.09 1.94 7.86 -2.39 -0.02 1.92 16 38 H 0.06 1.93 6.30 -2.38 -0.02 1.92 16 39 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.43 5.65 7.87 -92.71 -0.73 4.93 16 41 H 0.17 4.28 7.57 -2.91 -0.02 4.26 16 42 H 0.08 0.01 7.67 -2.39 -0.02 -0.01 16 43 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.08 -0.02 7.67 -2.39 -0.02 -0.04 16 45 H 0.26 -0.57 6.21 -2.91 -0.02 -0.58 16 Total: -1.00 -86.30 379.84 3.62 -82.68 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.26 Total: 8.82 kcal Atomic # 6 Polarization: 20.65 SS G_CDS: 7.58 Total: 28.24 kcal Atomic # 7 Polarization: -98.43 SS G_CDS: -3.73 Total: -102.16 kcal Atomic # 8 Polarization: -61.02 SS G_CDS: -2.22 Total: -63.24 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.72 Total: 45.66 kcal Total: -86.30 3.62 -82.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279044144.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.428 kcal (2) G-P(sol) polarization free energy of solvation -86.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds