Wall clock time and date at job start Sat Apr 11 2020 06:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 119.99843 * 2 1 4 4 H 1.48503 * 109.46898 * 269.99776 * 3 2 1 5 5 H 1.48500 * 109.46851 * 29.99680 * 3 2 1 6 6 H 1.48493 * 109.47099 * 149.99750 * 3 2 1 7 7 C 1.38805 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00192 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99921 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99770 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46806 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47097 * 304.99802 * 11 10 9 13 13 C 1.53002 * 109.47454 * 64.99922 * 11 10 9 14 14 C 1.53001 * 109.46963 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46886 * 299.99499 * 14 13 11 16 16 H 1.09002 * 109.47398 * 300.00496 * 15 14 13 17 17 N 1.46499 * 109.46840 * 180.02562 * 15 14 13 18 18 C 1.34781 * 119.99874 * 85.00543 * 17 15 14 19 19 O 1.21278 * 120.00033 * 359.97438 * 18 17 15 20 20 C 1.50703 * 120.00101 * 179.97438 * 18 17 15 21 21 N 1.46496 * 109.47297 * 179.97438 * 20 18 17 22 22 C 1.35041 * 126.03803 * 124.71434 * 21 20 18 23 23 C 1.35371 * 107.73151 * 179.84310 * 22 21 20 24 24 Cl 1.73595 * 126.05245 * 180.16362 * 23 22 21 25 25 C 1.39938 * 107.90322 * 0.42220 * 23 22 21 26 26 N 1.30843 * 108.21214 * 359.74112 * 25 23 22 27 27 C 1.53002 * 109.47233 * 60.00670 * 15 14 13 28 28 C 1.52997 * 109.46978 * 185.00001 * 11 10 9 29 29 H 0.96998 * 120.00440 * 0.02562 * 1 2 3 30 30 H 0.96991 * 120.00294 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47345 * 60.00038 * 10 9 7 32 32 H 1.09000 * 109.47148 * 299.99226 * 10 9 7 33 33 H 1.09000 * 109.46497 * 300.00109 * 13 11 10 34 34 H 1.09002 * 109.47067 * 59.99861 * 13 11 10 35 35 H 1.09001 * 109.46652 * 179.97438 * 14 13 11 36 36 H 1.08992 * 109.47514 * 59.99933 * 14 13 11 37 37 H 0.97002 * 120.00410 * 264.99761 * 17 15 14 38 38 H 1.09002 * 109.46880 * 299.99754 * 20 18 17 39 39 H 1.09003 * 109.46851 * 59.99965 * 20 18 17 40 40 H 1.08006 * 126.13550 * 359.97438 * 22 21 20 41 41 H 1.08000 * 125.88879 * 179.71950 * 25 23 22 42 42 H 1.09002 * 109.47075 * 59.99068 * 27 15 14 43 43 H 1.08996 * 109.47407 * 180.02562 * 27 15 14 44 44 H 1.09001 * 109.47375 * 59.99908 * 28 11 10 45 45 H 1.09002 * 109.47497 * 299.99550 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.0639 -4.8197 0.0008 12 1 0.3788 -4.7126 0.8418 13 6 0.2706 -4.8115 -1.3075 14 6 -0.7241 -5.9741 -1.3080 15 6 0.0362 -7.2957 -1.1809 16 1 0.7213 -7.4032 -2.0219 17 7 -0.9161 -8.4089 -1.1820 18 6 -1.3524 -8.9213 -2.3497 19 8 -0.9570 -8.4605 -3.3996 20 6 -2.3317 -10.0669 -2.3509 21 7 -2.6476 -10.4378 -3.7325 22 6 -2.5178 -11.6680 -4.2743 23 6 -2.9155 -11.5935 -5.5661 24 17 -2.9460 -12.9051 -6.7029 25 6 -3.2922 -10.2708 -5.8247 26 7 -3.1319 -9.5778 -4.7265 27 6 0.8295 -7.3040 0.1274 28 6 1.8246 -6.1410 0.1277 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.6841 -3.7141 0.8921 32 1 2.6854 -3.7149 -0.8879 33 1 -0.2713 -3.8701 -1.3978 34 1 0.9557 -4.9186 -2.1485 35 1 -1.2895 -5.9680 -2.2398 36 1 -1.4091 -5.8666 -0.4671 37 1 -1.2326 -8.7774 -0.3423 38 1 -1.8919 -10.9213 -1.8364 39 1 -3.2449 -9.7647 -1.8383 40 1 -2.1626 -12.5530 -3.7673 41 1 -3.6527 -9.8881 -6.7681 42 1 0.1445 -7.1964 0.9684 43 1 1.3716 -8.2453 0.2177 44 1 2.3898 -6.1469 1.0597 45 1 2.5097 -6.2482 -0.7133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280374141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:23 Heat of formation + Delta-G solvation = 35.626276 kcal Electronic energy + Delta-G solvation = -26373.996499 eV Core-core repulsion = 22453.914839 eV Total energy + Delta-G solvation = -3920.081661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.70703 -40.15097 -38.34776 -36.75272 -35.29115 -33.89310 -33.55844 -31.39939 -30.67801 -30.44388 -29.30198 -27.63599 -24.98510 -23.01080 -22.64304 -21.88580 -21.60052 -20.71835 -20.66296 -19.59993 -17.99848 -17.61855 -17.06124 -16.28665 -16.10240 -15.14982 -14.95312 -14.74385 -14.63417 -14.45313 -14.15836 -13.91269 -13.80903 -13.64312 -13.31360 -13.11146 -12.89640 -12.39983 -12.23059 -12.07430 -11.99551 -11.87719 -11.72684 -11.05272 -11.02174 -10.91964 -10.83058 -10.76597 -10.48607 -10.27925 -10.18822 -10.05974 -9.89689 -9.71893 -9.59517 -9.19464 -8.83410 -8.80350 -6.87332 -5.73395 -3.01321 1.27998 1.51841 2.23115 2.27872 2.36068 2.80482 3.45660 3.50568 3.52226 4.02067 4.19573 4.27697 4.47916 4.58943 4.61032 4.65939 4.79066 5.02390 5.05173 5.21521 5.27602 5.31601 5.49188 5.52532 5.61396 5.62552 5.66644 5.91286 5.98850 5.99291 6.06772 6.20523 6.25212 6.26363 6.29974 6.36528 6.46294 6.57716 6.75464 6.87984 6.98431 7.14708 7.17801 7.73105 7.87607 8.46046 9.56992 10.16243 10.50754 11.49652 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.022717 B = 0.001721 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.234166 B =16269.612714 C =16997.698447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.157 3.843 11 C -0.095 4.095 12 H 0.070 0.930 13 C -0.107 4.107 14 C -0.126 4.126 15 C 0.147 3.853 16 H 0.087 0.913 17 N -0.724 5.724 18 C 0.497 3.503 19 O -0.505 6.505 20 C 0.116 3.884 21 N -0.355 5.355 22 C 0.071 3.929 23 C -0.184 4.184 24 Cl -0.044 7.044 25 C 0.060 3.940 26 N -0.247 5.247 27 C -0.122 4.122 28 C -0.107 4.107 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.017 0.983 32 H 0.018 0.982 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.399 0.601 38 H 0.128 0.872 39 H 0.119 0.881 40 H 0.183 0.817 41 H 0.192 0.808 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.647 -30.620 -3.596 31.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.029 3.971 11 C -0.114 4.114 12 H 0.088 0.912 13 C -0.145 4.145 14 C -0.165 4.165 15 C 0.044 3.956 16 H 0.106 0.894 17 N -0.376 5.376 18 C 0.280 3.720 19 O -0.378 6.378 20 C -0.009 4.009 21 N -0.137 5.137 22 C -0.076 4.076 23 C -0.222 4.222 24 Cl -0.016 7.016 25 C -0.128 4.128 26 N -0.067 5.067 27 C -0.160 4.160 28 C -0.146 4.146 29 H 0.064 0.936 30 H 0.217 0.783 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.233 0.767 38 H 0.145 0.855 39 H 0.137 0.863 40 H 0.200 0.800 41 H 0.209 0.791 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.285 -29.077 -3.763 29.985 hybrid contribution 0.069 -0.158 -0.026 0.174 sum -6.216 -29.235 -3.789 30.127 Atomic orbital electron populations 1.69654 1.05087 1.25573 1.58003 1.24731 0.95524 0.97658 1.03203 0.86193 0.78619 0.83906 0.77505 1.21763 1.21809 1.20816 1.19244 0.91034 0.84283 1.42358 0.91265 1.42378 1.05845 0.99982 1.89399 1.20683 0.93244 0.85533 0.97633 1.21355 0.97718 0.94261 0.98027 0.91176 1.21490 0.97584 0.97974 0.97436 1.21919 0.98598 0.93869 1.02106 1.21122 0.90106 0.85145 0.99250 0.89444 1.46060 1.47245 1.36442 1.07830 1.20417 0.82474 0.84399 0.84747 1.90834 1.55983 1.60063 1.30923 1.21576 1.00788 0.99502 0.79055 1.47825 1.50346 1.06061 1.09510 1.22189 1.01484 0.90209 0.93724 1.20752 1.18001 0.91348 0.92140 1.98329 1.97905 1.46263 1.59134 1.23969 1.00027 0.90391 0.98454 1.77698 1.17410 1.15577 0.96006 1.21795 0.98464 0.99312 0.96395 1.21483 0.97318 0.93514 1.02284 0.93574 0.78255 0.96511 0.96428 0.90390 0.92139 0.91781 0.91929 0.76730 0.85457 0.86291 0.79955 0.79131 0.91370 0.91758 0.91402 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.59 13.06 55.49 0.72 -27.86 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 4 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.69 5.33 -59.91 -0.32 -19.01 16 10 C 0.16 3.15 5.65 -4.04 -0.02 3.13 16 11 C -0.09 -1.48 2.22 -90.62 -0.20 -1.68 16 12 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 13 C -0.11 -1.70 5.08 -26.73 -0.14 -1.83 16 14 C -0.13 -1.67 5.49 -26.73 -0.15 -1.81 16 15 C 0.15 1.58 2.45 -67.93 -0.17 1.41 16 16 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16 17 N -0.72 -5.68 5.08 -53.80 -0.27 -5.95 16 18 C 0.50 4.86 7.82 -10.98 -0.09 4.78 16 19 O -0.50 -7.72 15.37 5.56 0.09 -7.64 16 20 C 0.12 0.66 6.99 -5.19 -0.04 0.63 16 21 N -0.36 -3.23 3.40 -62.51 -0.21 -3.45 16 22 C 0.07 0.53 11.43 -17.16 -0.20 0.33 16 23 C -0.18 -1.63 6.65 -39.97 -0.27 -1.89 16 24 Cl -0.04 -0.35 29.30 -51.86 -1.52 -1.87 16 25 C 0.06 0.60 12.02 -17.34 -0.21 0.39 16 26 N -0.25 -3.02 11.64 30.64 0.36 -2.66 16 27 C -0.12 -1.12 5.39 -26.70 -0.14 -1.26 16 28 C -0.11 -1.27 5.21 -26.70 -0.14 -1.41 16 29 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.38 10.24 6.85 -40.82 -0.28 9.96 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 1.47 7.18 -51.93 -0.37 1.10 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.40 1.67 8.60 -40.82 -0.35 1.32 16 38 H 0.13 0.17 8.07 -51.93 -0.42 -0.25 16 39 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.18 0.65 8.06 -52.48 -0.42 0.23 16 41 H 0.19 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 386.06 15.07 5.82 5.82 Total: -1.00 -36.86 386.06 -9.22 -46.08 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.86 Total: 5.50 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -2.00 Total: -6.69 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: 0.28 Total: -58.93 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: 0.09 Total: -7.64 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.52 Total: -1.87 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.86 -9.22 -46.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280374141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.709 kcal (2) G-P(sol) polarization free energy of solvation -36.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds