Wall clock time and date at job start Sat Apr 11 2020 06:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 119.99843 * 2 1 4 4 H 1.48503 * 109.46898 * 269.99776 * 3 2 1 5 5 H 1.48500 * 109.46851 * 29.99680 * 3 2 1 6 6 H 1.48493 * 109.47099 * 149.99750 * 3 2 1 7 7 C 1.38805 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00192 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99921 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99770 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46806 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47097 * 304.99802 * 11 10 9 13 13 C 1.53002 * 109.47454 * 64.99922 * 11 10 9 14 14 C 1.53001 * 109.46963 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46886 * 299.99499 * 14 13 11 16 16 H 1.09002 * 109.47398 * 300.00496 * 15 14 13 17 17 N 1.46499 * 109.46840 * 180.02562 * 15 14 13 18 18 C 1.34781 * 119.99874 * 85.00543 * 17 15 14 19 19 O 1.21278 * 120.00033 * 359.97438 * 18 17 15 20 20 C 1.50703 * 120.00101 * 179.97438 * 18 17 15 21 21 N 1.46496 * 109.47297 * 179.97438 * 20 18 17 22 22 C 1.35041 * 126.03803 * 124.71434 * 21 20 18 23 23 C 1.35371 * 107.73151 * 179.84310 * 22 21 20 24 24 Cl 1.73595 * 126.05245 * 180.16362 * 23 22 21 25 25 C 1.39938 * 107.90322 * 0.42220 * 23 22 21 26 26 N 1.30843 * 108.21214 * 359.74112 * 25 23 22 27 27 C 1.53002 * 109.47233 * 60.00670 * 15 14 13 28 28 C 1.52997 * 109.46978 * 185.00001 * 11 10 9 29 29 H 0.96998 * 120.00440 * 0.02562 * 1 2 3 30 30 H 0.96991 * 120.00294 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47345 * 60.00038 * 10 9 7 32 32 H 1.09000 * 109.47148 * 299.99226 * 10 9 7 33 33 H 1.09000 * 109.46497 * 300.00109 * 13 11 10 34 34 H 1.09002 * 109.47067 * 59.99861 * 13 11 10 35 35 H 1.09001 * 109.46652 * 179.97438 * 14 13 11 36 36 H 1.08992 * 109.47514 * 59.99933 * 14 13 11 37 37 H 0.97002 * 120.00410 * 264.99761 * 17 15 14 38 38 H 1.09002 * 109.46880 * 299.99754 * 20 18 17 39 39 H 1.09003 * 109.46851 * 59.99965 * 20 18 17 40 40 H 1.08006 * 126.13550 * 359.97438 * 22 21 20 41 41 H 1.08000 * 125.88879 * 179.71950 * 25 23 22 42 42 H 1.09002 * 109.47075 * 59.99068 * 27 15 14 43 43 H 1.08996 * 109.47407 * 180.02562 * 27 15 14 44 44 H 1.09001 * 109.47375 * 59.99908 * 28 11 10 45 45 H 1.09002 * 109.47497 * 299.99550 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.0639 -4.8197 0.0008 12 1 0.3788 -4.7126 0.8418 13 6 0.2706 -4.8115 -1.3075 14 6 -0.7241 -5.9741 -1.3080 15 6 0.0362 -7.2957 -1.1809 16 1 0.7213 -7.4032 -2.0219 17 7 -0.9161 -8.4089 -1.1820 18 6 -1.3524 -8.9213 -2.3497 19 8 -0.9570 -8.4605 -3.3996 20 6 -2.3317 -10.0669 -2.3509 21 7 -2.6476 -10.4378 -3.7325 22 6 -2.5178 -11.6680 -4.2743 23 6 -2.9155 -11.5935 -5.5661 24 17 -2.9460 -12.9051 -6.7029 25 6 -3.2922 -10.2708 -5.8247 26 7 -3.1319 -9.5778 -4.7265 27 6 0.8295 -7.3040 0.1274 28 6 1.8246 -6.1410 0.1277 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.6841 -3.7141 0.8921 32 1 2.6854 -3.7149 -0.8879 33 1 -0.2713 -3.8701 -1.3978 34 1 0.9557 -4.9186 -2.1485 35 1 -1.2895 -5.9680 -2.2398 36 1 -1.4091 -5.8666 -0.4671 37 1 -1.2326 -8.7774 -0.3423 38 1 -1.8919 -10.9213 -1.8364 39 1 -3.2449 -9.7647 -1.8383 40 1 -2.1626 -12.5530 -3.7673 41 1 -3.6527 -9.8881 -6.7681 42 1 0.1445 -7.1964 0.9684 43 1 1.3716 -8.2453 0.2177 44 1 2.3898 -6.1469 1.0597 45 1 2.5097 -6.2482 -0.7133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280374141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:22 Heat of formation + Delta-G solvation = 9.593972 kcal Electronic energy + Delta-G solvation = -26375.125345 eV Core-core repulsion = 22453.914839 eV Total energy + Delta-G solvation = -3921.210506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.33267 -40.99793 -39.43232 -37.35571 -36.73599 -35.17389 -34.37159 -33.09215 -31.73982 -31.16327 -30.63650 -28.43366 -26.61166 -24.60213 -23.71362 -22.82344 -22.20058 -21.85669 -21.45119 -20.74884 -19.18303 -18.62180 -18.24822 -17.13364 -16.76748 -16.68332 -15.98583 -15.80299 -15.60264 -15.33412 -15.30535 -15.24834 -14.88393 -14.64524 -14.59311 -14.22498 -13.78871 -13.61224 -13.37727 -13.21588 -13.09174 -12.89070 -12.77442 -12.66115 -12.34786 -12.17954 -12.07321 -12.04193 -11.90864 -11.54761 -11.44762 -11.30548 -11.17666 -11.06389 -10.90961 -10.46524 -10.06789 -9.42100 -8.99409 -7.96376 -5.24680 0.69186 0.97975 1.45044 1.47369 1.53640 1.55722 1.60902 1.77570 2.14443 2.54856 3.36876 3.53615 3.66045 3.72381 3.74937 3.85347 3.94634 4.06865 4.07445 4.16016 4.17431 4.42415 4.45163 4.50495 4.52499 4.56905 4.58832 4.62264 4.81765 4.93641 5.06605 5.08460 5.13257 5.20181 5.23980 5.30496 5.32946 5.45522 5.48550 5.52981 5.60893 5.80191 6.26408 6.52226 6.54595 7.24336 7.32322 8.10277 8.33093 9.27292 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.022717 B = 0.001721 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.234166 B =16269.612714 C =16997.698447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.974 3.026 4 H -0.289 1.289 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.247 4.247 8 H 0.074 0.926 9 N -0.745 5.745 10 C 0.152 3.848 11 C -0.082 4.082 12 H 0.069 0.931 13 C -0.102 4.102 14 C -0.116 4.116 15 C 0.155 3.845 16 H 0.062 0.938 17 N -0.705 5.705 18 C 0.492 3.508 19 O -0.569 6.569 20 C 0.115 3.885 21 N -0.360 5.360 22 C 0.086 3.914 23 C -0.204 4.204 24 Cl -0.041 7.041 25 C 0.048 3.952 26 N -0.302 5.302 27 C -0.109 4.109 28 C -0.103 4.103 29 H 0.251 0.749 30 H 0.374 0.626 31 H 0.024 0.976 32 H 0.012 0.988 33 H 0.038 0.962 34 H 0.046 0.954 35 H 0.038 0.962 36 H 0.073 0.927 37 H 0.422 0.578 38 H 0.183 0.817 39 H 0.144 0.856 40 H 0.226 0.774 41 H 0.199 0.801 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.958 -33.532 -1.501 34.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.803 3.197 4 H -0.216 1.216 5 H -0.220 1.220 6 H -0.193 1.193 7 C -0.379 4.379 8 H 0.092 0.908 9 N -0.387 5.387 10 C 0.026 3.974 11 C -0.101 4.101 12 H 0.087 0.913 13 C -0.140 4.140 14 C -0.155 4.155 15 C 0.050 3.950 16 H 0.081 0.919 17 N -0.359 5.359 18 C 0.277 3.723 19 O -0.446 6.446 20 C -0.008 4.008 21 N -0.142 5.142 22 C -0.061 4.061 23 C -0.243 4.243 24 Cl -0.013 7.013 25 C -0.139 4.139 26 N -0.123 5.123 27 C -0.147 4.147 28 C -0.142 4.142 29 H 0.060 0.940 30 H 0.206 0.794 31 H 0.042 0.958 32 H 0.030 0.970 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.260 0.740 38 H 0.200 0.800 39 H 0.161 0.839 40 H 0.243 0.757 41 H 0.216 0.784 42 H 0.106 0.894 43 H 0.113 0.887 44 H 0.102 0.898 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.581 -32.036 -1.619 32.559 hybrid contribution -0.115 0.715 -0.698 1.006 sum -5.696 -31.322 -2.317 31.920 Atomic orbital electron populations 1.69817 1.06620 1.26045 1.59609 1.25586 0.96442 1.01166 1.03784 0.85125 0.77781 0.79416 0.77357 1.21643 1.21982 1.19266 1.19670 0.91514 0.85584 1.41105 0.90782 1.42605 1.05628 1.01228 1.89274 1.20904 0.94092 0.85136 0.97292 1.21244 0.96847 0.94744 0.97290 0.91274 1.21366 0.97708 0.97427 0.97512 1.21788 0.97982 0.94498 1.01215 1.20823 0.90020 0.84556 0.99571 0.91934 1.45814 1.46206 1.35135 1.08706 1.21206 0.82221 0.84843 0.83993 1.90822 1.58345 1.62233 1.33208 1.21990 1.00853 0.99831 0.78125 1.48100 1.49834 1.06176 1.10120 1.22860 0.99316 0.90735 0.93217 1.20914 1.19182 0.91039 0.93118 1.98324 1.97968 1.45791 1.59196 1.24243 0.99857 0.91247 0.98590 1.77613 1.19548 1.17624 0.97479 1.21721 0.98051 0.99303 0.95610 1.21452 0.97655 0.92061 1.02988 0.94032 0.79413 0.95834 0.97048 0.94349 0.93474 0.94327 0.90788 0.73977 0.79997 0.83861 0.75732 0.78414 0.89442 0.88725 0.89826 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.85 13.06 21.65 0.28 -60.57 16 2 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 3 Si 0.97 47.26 29.55 68.60 2.03 49.28 16 4 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 5 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.25 -14.24 9.99 84.03 0.84 -13.40 16 8 H 0.07 4.11 7.83 -2.91 -0.02 4.08 16 9 N -0.74 -39.03 5.33 -343.45 -1.83 -40.86 16 10 C 0.15 6.18 5.65 86.38 0.49 6.66 16 11 C -0.08 -2.54 2.22 -10.79 -0.02 -2.57 16 12 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 13 C -0.10 -3.40 5.08 30.60 0.16 -3.24 16 14 C -0.12 -3.10 5.49 30.59 0.17 -2.93 16 15 C 0.16 3.08 2.45 44.99 0.11 3.19 16 16 H 0.06 1.61 7.58 -2.39 -0.02 1.59 16 17 N -0.71 -9.09 5.08 -442.52 -2.25 -11.33 16 18 C 0.49 8.77 7.82 87.66 0.69 9.45 16 19 O -0.57 -17.65 15.37 -3.02 -0.05 -17.70 16 20 C 0.12 0.92 6.99 85.63 0.60 1.52 16 21 N -0.36 -5.87 3.40 -351.67 -1.20 -7.06 16 22 C 0.09 1.06 11.43 83.54 0.95 2.01 16 23 C -0.20 -3.42 6.65 22.02 0.15 -3.27 16 24 Cl -0.04 -0.61 29.30 -2.72 -0.08 -0.69 16 25 C 0.05 0.99 12.02 85.25 1.02 2.01 16 26 N -0.30 -7.46 11.64 -56.97 -0.66 -8.13 16 27 C -0.11 -1.61 5.39 30.61 0.17 -1.44 16 28 C -0.10 -2.21 5.21 30.61 0.16 -2.05 16 29 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 30 H 0.37 20.78 6.85 -92.72 -0.64 20.14 16 31 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.04 1.56 7.18 -2.39 -0.02 1.54 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.42 1.60 8.60 -92.71 -0.80 0.80 16 38 H 0.18 -0.60 8.07 -2.39 -0.02 -0.62 16 39 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.23 0.56 8.06 -2.91 -0.02 0.54 16 41 H 0.20 3.29 8.06 -2.91 -0.02 3.27 16 42 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -85.87 386.06 1.77 -84.11 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -0.42 Total: 21.11 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: 5.94 Total: -8.17 kcal Atomic # 7 Polarization: -122.29 SS G_CDS: -5.65 Total: -127.94 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.05 Total: -17.70 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.28 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.69 kcal Total: -85.87 1.77 -84.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280374141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.699 kcal (2) G-P(sol) polarization free energy of solvation -85.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds