Wall clock time and date at job start Sat Apr 11 2020 06:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30410 * 125.98223 * 2 1 4 4 N 1.39920 * 108.96388 * 180.24349 * 3 2 1 5 5 C 1.46498 * 125.75558 * 179.73855 * 4 3 2 6 6 C 1.34352 * 108.49811 * 359.73693 * 4 3 2 7 7 Cl 1.73602 * 126.31643 * 179.97438 * 6 4 3 8 8 C 1.38272 * 107.36533 * 359.97438 * 6 4 3 9 9 C 1.47298 * 126.43868 * 179.97438 * 8 6 4 10 10 O 1.21615 * 119.99760 * 90.02581 * 9 8 6 11 11 N 1.34775 * 120.00179 * 270.02642 * 9 8 6 12 12 C 1.46969 * 120.65220 * 5.60878 * 11 9 8 13 13 C 1.53192 * 108.88986 * 126.46264 * 12 11 9 14 14 C 1.53043 * 109.31013 * 54.55623 * 13 12 11 15 15 C 1.53048 * 109.53549 * 298.63076 * 14 13 12 16 16 C 1.46923 * 120.63321 * 185.42146 * 11 9 8 17 17 H 1.08998 * 109.58782 * 113.67685 * 16 11 9 18 18 C 1.53004 * 109.58468 * 353.40018 * 16 11 9 19 19 N 1.46504 * 109.47105 * 180.42221 * 18 16 11 20 20 C 1.36931 * 120.00031 * 174.97576 * 19 18 16 21 21 H 1.08003 * 119.99605 * 0.02562 * 20 19 18 22 22 C 1.38808 * 120.00131 * 179.72250 * 20 19 18 23 23 N 1.31623 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00090 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46949 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47187 * 120.00030 * 24 22 20 27 27 H 1.48503 * 109.46691 * 239.99886 * 24 22 20 28 28 H 1.08998 * 109.46933 * 270.20194 * 1 2 3 29 29 H 1.09002 * 109.46906 * 30.19478 * 1 2 3 30 30 H 1.08994 * 109.47187 * 150.19388 * 1 2 3 31 31 H 1.09005 * 109.46951 * 270.00481 * 5 4 3 32 32 H 1.09004 * 109.46634 * 29.99423 * 5 4 3 33 33 H 1.08988 * 109.47869 * 149.99952 * 5 4 3 34 34 H 1.08998 * 109.59352 * 6.59915 * 12 11 9 35 35 H 1.09007 * 109.57682 * 246.31513 * 12 11 9 36 36 H 1.08993 * 109.49307 * 294.60643 * 13 12 11 37 37 H 1.08999 * 109.49694 * 174.50660 * 13 12 11 38 38 H 1.09000 * 109.45560 * 178.61566 * 14 13 12 39 39 H 1.08994 * 109.45121 * 58.64498 * 14 13 12 40 40 H 1.08991 * 109.50013 * 301.41841 * 15 14 13 41 41 H 1.08998 * 109.51757 * 181.33316 * 15 14 13 42 42 H 1.08996 * 109.47085 * 60.41931 * 18 16 11 43 43 H 1.09001 * 109.47043 * 300.41797 * 18 16 11 44 44 H 0.97001 * 119.99860 * 354.97827 * 19 18 16 45 45 H 0.97002 * 119.99496 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2732 1.0553 0.0000 4 7 3.6111 0.6458 -0.0056 5 6 4.7776 1.5320 -0.0128 6 6 3.6458 -0.6973 -0.0032 7 17 5.0707 -1.6890 -0.0088 8 6 2.3373 -1.1439 0.0044 9 6 1.8921 -2.5480 0.0089 10 8 1.7135 -3.1259 1.0640 11 7 1.6826 -3.1923 -1.1562 12 6 2.0102 -2.5501 -2.4369 13 6 2.9277 -3.4797 -3.2375 14 6 2.2634 -4.8518 -3.3739 15 6 2.0535 -5.4591 -1.9849 16 6 1.1261 -4.5520 -1.1702 17 1 0.1363 -4.5370 -1.6264 18 6 1.0224 -5.0786 0.2626 19 7 0.4767 -6.4381 0.2449 20 6 0.3886 -7.1556 1.4079 21 1 0.7209 -6.7191 2.3382 22 6 -0.1338 -8.4415 1.3921 23 7 -0.5439 -8.9714 0.2592 24 14 -0.2547 -9.4201 2.9787 25 1 0.2698 -8.6053 4.1039 26 1 -1.6748 -9.7680 3.2387 27 1 0.5452 -10.6651 2.8545 28 1 -0.3633 0.0036 1.0277 29 1 -0.3633 0.8883 -0.5169 30 1 -0.3633 -0.8917 -0.5108 31 1 5.0619 1.7500 -1.0423 32 1 4.5308 2.4615 0.5004 33 1 5.6077 1.0443 0.4979 34 1 2.5197 -1.6045 -2.2519 35 1 1.0942 -2.3679 -2.9990 36 1 3.8799 -3.5866 -2.7181 37 1 3.0982 -3.0580 -4.2280 38 1 2.9032 -5.5078 -3.9642 39 1 1.2999 -4.7407 -3.8711 40 1 3.0140 -5.5473 -1.4774 41 1 1.6021 -6.4463 -2.0836 42 1 0.3643 -4.4303 0.8412 43 1 2.0127 -5.0905 0.7178 44 1 0.1779 -6.8299 -0.5906 45 1 -0.9086 -9.8702 0.2481 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317190478.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:40 Heat of formation + Delta-G solvation = 64.790438 kcal Electronic energy + Delta-G solvation = -28538.624006 eV Core-core repulsion = 24619.806998 eV Total energy + Delta-G solvation = -3918.817008 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.76530 -39.94209 -37.25656 -37.07896 -34.77303 -34.27621 -32.67461 -31.97951 -30.57024 -29.74880 -29.55491 -26.69432 -25.74119 -24.32955 -23.33136 -22.28150 -21.05453 -20.90459 -20.24055 -19.02482 -17.52559 -16.95027 -16.48605 -16.11642 -15.64145 -15.33961 -14.64192 -14.47904 -14.33437 -14.04254 -13.91253 -13.73770 -13.48189 -13.31315 -13.07548 -12.94106 -12.90690 -12.65836 -12.55807 -12.49769 -12.02323 -11.97176 -11.85966 -11.55279 -11.04360 -10.90979 -10.83688 -10.74504 -10.64989 -10.44892 -10.30163 -9.89832 -9.60156 -9.53369 -9.02783 -8.77508 -8.62030 -8.24812 -6.70053 -5.61377 -2.87058 1.03524 1.17855 2.10607 2.19839 2.73313 3.20775 3.53915 3.59763 3.63077 4.00546 4.49849 4.68276 4.71021 4.77792 4.81815 4.83854 4.95308 4.96000 5.08988 5.17096 5.31641 5.45206 5.45805 5.52300 5.55931 5.64326 5.68067 5.73637 5.88022 5.89779 6.05295 6.08157 6.12150 6.26092 6.30274 6.35757 6.36494 6.64708 6.84262 7.17665 7.19463 7.36190 7.63778 7.90569 8.44204 8.60825 9.69515 10.28995 10.64091 11.62354 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014371 B = 0.003382 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.953109 B = 8276.367231 C = 8756.553961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.120 3.880 3 N -0.275 5.275 4 N -0.356 5.356 5 C 0.094 3.906 6 C 0.151 3.849 7 Cl 0.013 6.987 8 C -0.244 4.244 9 C 0.587 3.413 10 O -0.500 6.500 11 N -0.596 5.596 12 C 0.114 3.886 13 C -0.133 4.133 14 C -0.120 4.120 15 C -0.125 4.125 16 C 0.140 3.860 17 H 0.072 0.928 18 C 0.163 3.837 19 N -0.738 5.738 20 C -0.221 4.221 21 H 0.071 0.929 22 C -0.020 4.020 23 N -0.939 5.939 24 Si 0.904 3.096 25 H -0.281 1.281 26 H -0.293 1.293 27 H -0.294 1.294 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.042 0.958 43 H 0.037 0.963 44 H 0.378 0.622 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.818 23.310 -9.123 27.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.046 4.046 3 N -0.098 5.098 4 N -0.139 5.139 5 C -0.047 4.047 6 C -0.005 4.005 7 Cl 0.041 6.959 8 C -0.260 4.260 9 C 0.372 3.628 10 O -0.374 6.374 11 N -0.330 5.330 12 C -0.009 4.009 13 C -0.171 4.171 14 C -0.157 4.157 15 C -0.164 4.164 16 C 0.038 3.962 17 H 0.090 0.910 18 C 0.037 3.963 19 N -0.383 5.383 20 C -0.353 4.353 21 H 0.089 0.911 22 C -0.215 4.215 23 N -0.589 5.589 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.221 1.221 27 H -0.221 1.221 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.212 0.788 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.045 24.254 -8.349 27.927 hybrid contribution 0.275 -1.570 0.463 1.659 sum 11.320 22.684 -7.887 26.550 Atomic orbital electron populations 1.20315 0.85240 1.03931 1.04162 1.22318 0.97199 0.88255 0.96837 1.77255 0.84761 1.21541 1.26292 1.48330 1.06590 1.02619 1.56334 1.22042 0.83890 0.94575 1.04183 1.21949 0.89987 0.84096 1.04488 1.98446 1.35316 1.65464 1.96667 1.19972 0.90218 0.95740 1.20103 1.17188 0.77851 0.83804 0.83952 1.90956 1.49357 1.65733 1.31332 1.48059 1.63410 1.16247 1.05280 1.21610 0.99020 0.95829 0.84477 1.21906 0.99138 0.96355 0.99720 1.21550 1.00662 0.95683 0.97842 1.21925 1.00496 0.99660 0.94293 1.21614 0.95734 0.79275 0.99579 0.91001 1.21274 0.98355 0.86411 0.90249 1.42585 1.75521 1.11965 1.08275 1.19294 1.32932 0.95293 0.87736 0.91144 1.24686 1.02482 0.97537 0.96810 1.69670 1.49152 1.15887 1.24209 0.86135 0.77114 0.80033 0.83152 1.20594 1.22065 1.22106 0.89428 0.90100 0.89808 0.89854 0.88318 0.89092 0.90681 0.91451 0.91620 0.91197 0.91878 0.91865 0.91696 0.89480 0.94047 0.94488 0.78815 0.93863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.28 36.01 0.37 -0.41 16 2 C 0.12 1.50 7.26 -82.01 -0.60 0.91 16 3 N -0.28 -3.32 12.49 33.90 0.42 -2.89 16 4 N -0.36 -3.76 3.98 -64.32 -0.26 -4.02 16 5 C 0.09 0.54 11.28 59.85 0.67 1.22 16 6 C 0.15 1.84 7.23 -16.44 -0.12 1.72 16 7 Cl 0.01 0.14 28.56 -51.86 -1.48 -1.34 16 8 C -0.24 -3.41 4.00 -105.02 -0.42 -3.83 16 9 C 0.59 9.76 6.99 -12.58 -0.09 9.67 16 10 O -0.50 -10.50 12.50 5.26 0.07 -10.43 16 11 N -0.60 -8.89 2.98 -166.49 -0.50 -9.39 16 12 C 0.11 1.28 6.31 -3.69 -0.02 1.25 16 13 C -0.13 -1.39 6.08 -26.61 -0.16 -1.55 16 14 C -0.12 -1.44 5.88 -26.68 -0.16 -1.60 16 15 C -0.13 -2.03 5.12 -26.61 -0.14 -2.16 16 16 C 0.14 2.46 3.04 -67.60 -0.21 2.25 16 17 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 18 C 0.16 3.72 4.10 -4.04 -0.02 3.71 16 19 N -0.74 -19.69 5.28 -59.91 -0.32 -20.00 16 20 C -0.22 -6.57 9.99 -15.06 -0.15 -6.72 16 21 H 0.07 2.10 7.83 -52.48 -0.41 1.69 16 22 C -0.02 -0.61 5.50 -17.43 -0.10 -0.71 16 23 N -0.94 -29.14 13.06 55.49 0.72 -28.41 16 24 Si 0.90 23.50 29.55 -169.99 -5.02 18.48 16 25 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 27 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.42 7.77 -51.94 -0.40 0.01 16 34 H 0.07 0.80 6.16 -51.93 -0.32 0.48 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.09 1.59 7.16 -51.93 -0.37 1.22 16 42 H 0.04 1.03 6.48 -51.93 -0.34 0.69 16 43 H 0.04 0.92 7.00 -51.93 -0.36 0.56 16 44 H 0.38 10.27 6.74 -40.82 -0.28 10.00 16 45 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 377.83 15.07 5.69 5.69 Total: -1.00 -35.53 377.83 -8.47 -44.01 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.68 Total: 4.55 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -1.12 Total: 3.76 kcal Atomic # 7 Polarization: -64.80 SS G_CDS: 0.08 Total: -64.72 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.07 Total: -10.43 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -5.02 Total: 18.48 kcal Atomic # 17 Polarization: 0.14 SS G_CDS: -1.48 Total: -1.34 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.53 -8.47 -44.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317190478.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.797 kcal (2) G-P(sol) polarization free energy of solvation -35.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds