Wall clock time and date at job start Sat Apr 11 2020 06:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30410 * 125.98223 * 2 1 4 4 N 1.39920 * 108.96388 * 180.24349 * 3 2 1 5 5 C 1.46498 * 125.75558 * 179.73855 * 4 3 2 6 6 C 1.34352 * 108.49811 * 359.73693 * 4 3 2 7 7 Cl 1.73602 * 126.31643 * 179.97438 * 6 4 3 8 8 C 1.38272 * 107.36533 * 359.97438 * 6 4 3 9 9 C 1.47298 * 126.43868 * 179.97438 * 8 6 4 10 10 O 1.21615 * 119.99760 * 90.02581 * 9 8 6 11 11 N 1.34775 * 120.00179 * 270.02642 * 9 8 6 12 12 C 1.46969 * 120.65220 * 5.60878 * 11 9 8 13 13 C 1.53192 * 108.88986 * 126.46264 * 12 11 9 14 14 C 1.53043 * 109.31013 * 54.55623 * 13 12 11 15 15 C 1.53048 * 109.53549 * 298.63076 * 14 13 12 16 16 C 1.46923 * 120.63321 * 185.42146 * 11 9 8 17 17 H 1.08998 * 109.58782 * 113.67685 * 16 11 9 18 18 C 1.53004 * 109.58468 * 353.40018 * 16 11 9 19 19 N 1.46504 * 109.47105 * 180.42221 * 18 16 11 20 20 C 1.36931 * 120.00031 * 174.97576 * 19 18 16 21 21 H 1.08003 * 119.99605 * 0.02562 * 20 19 18 22 22 C 1.38808 * 120.00131 * 179.72250 * 20 19 18 23 23 N 1.31623 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00090 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46949 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47187 * 120.00030 * 24 22 20 27 27 H 1.48503 * 109.46691 * 239.99886 * 24 22 20 28 28 H 1.08998 * 109.46933 * 270.20194 * 1 2 3 29 29 H 1.09002 * 109.46906 * 30.19478 * 1 2 3 30 30 H 1.08994 * 109.47187 * 150.19388 * 1 2 3 31 31 H 1.09005 * 109.46951 * 270.00481 * 5 4 3 32 32 H 1.09004 * 109.46634 * 29.99423 * 5 4 3 33 33 H 1.08988 * 109.47869 * 149.99952 * 5 4 3 34 34 H 1.08998 * 109.59352 * 6.59915 * 12 11 9 35 35 H 1.09007 * 109.57682 * 246.31513 * 12 11 9 36 36 H 1.08993 * 109.49307 * 294.60643 * 13 12 11 37 37 H 1.08999 * 109.49694 * 174.50660 * 13 12 11 38 38 H 1.09000 * 109.45560 * 178.61566 * 14 13 12 39 39 H 1.08994 * 109.45121 * 58.64498 * 14 13 12 40 40 H 1.08991 * 109.50013 * 301.41841 * 15 14 13 41 41 H 1.08998 * 109.51757 * 181.33316 * 15 14 13 42 42 H 1.08996 * 109.47085 * 60.41931 * 18 16 11 43 43 H 1.09001 * 109.47043 * 300.41797 * 18 16 11 44 44 H 0.97001 * 119.99860 * 354.97827 * 19 18 16 45 45 H 0.97002 * 119.99496 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2732 1.0553 0.0000 4 7 3.6111 0.6458 -0.0056 5 6 4.7776 1.5320 -0.0128 6 6 3.6458 -0.6973 -0.0032 7 17 5.0707 -1.6890 -0.0088 8 6 2.3373 -1.1439 0.0044 9 6 1.8921 -2.5480 0.0089 10 8 1.7135 -3.1259 1.0640 11 7 1.6826 -3.1923 -1.1562 12 6 2.0102 -2.5501 -2.4369 13 6 2.9277 -3.4797 -3.2375 14 6 2.2634 -4.8518 -3.3739 15 6 2.0535 -5.4591 -1.9849 16 6 1.1261 -4.5520 -1.1702 17 1 0.1363 -4.5370 -1.6264 18 6 1.0224 -5.0786 0.2626 19 7 0.4767 -6.4381 0.2449 20 6 0.3886 -7.1556 1.4079 21 1 0.7209 -6.7191 2.3382 22 6 -0.1338 -8.4415 1.3921 23 7 -0.5439 -8.9714 0.2592 24 14 -0.2547 -9.4201 2.9787 25 1 0.2698 -8.6053 4.1039 26 1 -1.6748 -9.7680 3.2387 27 1 0.5452 -10.6651 2.8545 28 1 -0.3633 0.0036 1.0277 29 1 -0.3633 0.8883 -0.5169 30 1 -0.3633 -0.8917 -0.5108 31 1 5.0619 1.7500 -1.0423 32 1 4.5308 2.4615 0.5004 33 1 5.6077 1.0443 0.4979 34 1 2.5197 -1.6045 -2.2519 35 1 1.0942 -2.3679 -2.9990 36 1 3.8799 -3.5866 -2.7181 37 1 3.0982 -3.0580 -4.2280 38 1 2.9032 -5.5078 -3.9642 39 1 1.2999 -4.7407 -3.8711 40 1 3.0140 -5.5473 -1.4774 41 1 1.6021 -6.4463 -2.0836 42 1 0.3643 -4.4303 0.8412 43 1 2.0127 -5.0905 0.7178 44 1 0.1779 -6.8299 -0.5906 45 1 -0.9086 -9.8702 0.2481 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317190478.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:39 Heat of formation + Delta-G solvation = 41.011852 kcal Electronic energy + Delta-G solvation = -28539.655123 eV Core-core repulsion = 24619.806998 eV Total energy + Delta-G solvation = -3919.848125 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.71462 -41.20486 -38.36338 -38.16667 -36.59685 -35.21372 -33.93784 -33.71750 -31.73341 -31.19185 -30.45541 -27.96655 -26.95059 -25.65730 -24.95664 -23.52027 -22.53812 -21.93133 -21.22603 -20.20015 -19.18992 -18.41415 -17.59202 -17.16317 -16.83954 -16.52034 -16.39832 -15.71128 -15.47231 -15.41284 -15.18221 -14.94006 -14.57482 -14.43714 -14.33844 -14.30027 -13.91653 -13.69059 -13.61046 -13.46996 -13.28080 -13.07430 -12.87139 -12.84931 -12.79035 -12.70328 -12.16169 -12.10980 -11.99220 -11.84646 -11.80803 -11.58138 -11.40353 -10.96428 -10.41115 -10.37053 -9.72432 -9.59406 -8.91940 -7.93624 -5.20792 0.11837 0.26109 1.13934 1.43447 1.45752 1.46372 1.48570 1.57938 2.00770 2.58248 3.16289 3.39273 3.63693 3.70420 3.86394 3.88935 4.04581 4.10132 4.16343 4.20585 4.21660 4.30429 4.31413 4.43455 4.58445 4.61881 4.67163 4.69053 4.74346 4.83191 4.86353 4.97240 5.06763 5.14783 5.21230 5.25837 5.30312 5.33301 5.47996 5.49291 5.50680 5.69094 6.27468 6.29303 6.42072 7.17443 7.35878 8.10288 8.38599 9.30045 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014371 B = 0.003382 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.953109 B = 8276.367231 C = 8756.553961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.116 3.884 3 N -0.281 5.281 4 N -0.346 5.346 5 C 0.080 3.920 6 C 0.154 3.846 7 Cl 0.020 6.980 8 C -0.270 4.270 9 C 0.589 3.411 10 O -0.558 6.558 11 N -0.590 5.590 12 C 0.110 3.890 13 C -0.126 4.126 14 C -0.112 4.112 15 C -0.119 4.119 16 C 0.150 3.850 17 H 0.078 0.922 18 C 0.177 3.823 19 N -0.743 5.743 20 C -0.239 4.239 21 H 0.060 0.940 22 C -0.071 4.071 23 N -0.966 5.966 24 Si 0.971 3.029 25 H -0.275 1.275 26 H -0.288 1.288 27 H -0.288 1.288 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.057 0.943 37 H 0.107 0.893 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.046 0.954 41 H 0.060 0.940 42 H 0.020 0.980 43 H 0.011 0.989 44 H 0.374 0.626 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.757 25.160 -10.627 29.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.050 4.050 3 N -0.105 5.105 4 N -0.128 5.128 5 C -0.058 4.058 6 C -0.004 4.004 7 Cl 0.048 6.952 8 C -0.287 4.287 9 C 0.376 3.624 10 O -0.435 6.435 11 N -0.323 5.323 12 C -0.011 4.011 13 C -0.164 4.164 14 C -0.150 4.150 15 C -0.157 4.157 16 C 0.047 3.953 17 H 0.096 0.904 18 C 0.051 3.949 19 N -0.388 5.388 20 C -0.372 4.372 21 H 0.078 0.922 22 C -0.264 4.264 23 N -0.617 5.617 24 Si 0.800 3.200 25 H -0.200 1.200 26 H -0.215 1.215 27 H -0.215 1.215 28 H 0.103 0.897 29 H 0.123 0.877 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.122 0.878 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.076 0.924 37 H 0.125 0.875 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.038 0.962 43 H 0.029 0.971 44 H 0.207 0.793 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 12.011 26.168 -9.897 30.446 hybrid contribution 0.069 -2.065 0.932 2.266 sum 12.080 24.103 -8.965 28.412 Atomic orbital electron populations 1.20377 0.84120 1.04798 1.04295 1.22565 0.98068 0.87696 0.96651 1.77230 0.85411 1.21320 1.26511 1.48711 1.07188 1.02442 1.54411 1.22509 0.82615 0.94485 1.06217 1.21933 0.89708 0.84943 1.03842 1.98450 1.34671 1.65444 1.96585 1.19740 0.91533 0.94385 1.23023 1.17576 0.76708 0.84757 0.83384 1.90923 1.52041 1.67291 1.33283 1.48112 1.62463 1.15017 1.06670 1.21924 1.00447 0.96124 0.82654 1.21901 0.98122 0.95045 1.01366 1.21516 1.01973 0.96694 0.94779 1.21809 0.98667 0.98414 0.96820 1.21297 0.96816 0.81076 0.96137 0.90429 1.21085 0.95878 0.84315 0.93577 1.42702 1.75564 1.13233 1.07317 1.19517 1.33181 0.96079 0.88381 0.92157 1.25479 1.02316 0.98369 1.00206 1.69805 1.49663 1.16141 1.26059 0.85106 0.77128 0.78369 0.79382 1.19957 1.21475 1.21503 0.89668 0.87739 0.90358 0.87464 0.86864 0.87815 0.89607 0.89308 0.92395 0.87506 0.90511 0.90559 0.93525 0.92096 0.96250 0.97094 0.79301 0.93886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.51 10.28 71.24 0.73 -0.77 16 2 C 0.12 2.79 7.26 43.54 0.32 3.11 16 3 N -0.28 -6.27 12.49 -46.66 -0.58 -6.85 16 4 N -0.35 -6.58 3.98 -357.41 -1.42 -8.00 16 5 C 0.08 0.70 11.28 127.77 1.44 2.14 16 6 C 0.15 3.57 7.23 84.32 0.61 4.18 16 7 Cl 0.02 0.43 28.56 -2.72 -0.08 0.35 16 8 C -0.27 -7.46 4.00 -20.12 -0.08 -7.54 16 9 C 0.59 20.11 6.99 86.63 0.61 20.72 16 10 O -0.56 -24.88 12.50 -4.08 -0.05 -24.93 16 11 N -0.59 -17.61 2.98 -798.91 -2.38 -19.99 16 12 C 0.11 2.22 6.31 86.35 0.55 2.76 16 13 C -0.13 -2.26 6.08 30.67 0.19 -2.07 16 14 C -0.11 -2.48 5.88 30.62 0.18 -2.30 16 15 C -0.12 -3.90 5.12 30.67 0.16 -3.74 16 16 C 0.15 5.41 3.04 44.98 0.14 5.54 16 17 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 18 C 0.18 8.57 4.10 86.38 0.35 8.93 16 19 N -0.74 -41.56 5.28 -343.45 -1.81 -43.37 16 20 C -0.24 -14.75 9.99 84.03 0.84 -13.91 16 21 H 0.06 3.76 7.83 -2.91 -0.02 3.73 16 22 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16 23 N -0.97 -60.87 13.06 21.65 0.28 -60.59 16 24 Si 0.97 49.04 29.55 68.60 2.03 51.07 16 25 H -0.27 -13.47 7.11 99.48 0.71 -12.76 16 26 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 27 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 28 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.59 8.01 -2.39 -0.02 1.57 16 31 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.10 0.67 7.77 -2.39 -0.02 0.65 16 34 H 0.09 1.61 6.16 -2.39 -0.01 1.60 16 35 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.06 2.31 7.16 -2.39 -0.02 2.29 16 42 H 0.02 1.04 6.48 -2.39 -0.02 1.03 16 43 H 0.01 0.59 7.00 -2.39 -0.02 0.57 16 44 H 0.37 21.20 6.74 -92.71 -0.63 20.58 16 45 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -79.88 377.83 2.86 -77.02 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.39 Total: 22.12 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 6.49 Total: 13.17 kcal Atomic # 7 Polarization: -132.88 SS G_CDS: -5.92 Total: -138.80 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.05 Total: -24.93 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 2.03 Total: 51.07 kcal Atomic # 17 Polarization: 0.43 SS G_CDS: -0.08 Total: 0.35 kcal Total: -79.88 2.86 -77.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317190478.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.031 kcal (2) G-P(sol) polarization free energy of solvation -79.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds