Wall clock time and date at job start Sat Apr 11 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34235 * 116.99875 * 2 1 4 4 O 1.20821 * 119.99797 * 0.02562 * 3 2 1 5 5 C 1.50693 * 119.99818 * 180.02562 * 3 2 1 6 6 H 1.09009 * 109.55514 * 304.87493 * 5 3 2 7 7 C 1.53293 * 109.51641 * 65.00135 * 5 3 2 8 8 N 1.47152 * 108.38832 * 172.22100 * 7 5 3 9 9 C 1.34779 * 120.97761 * 129.44223 * 8 7 5 10 10 O 1.21341 * 120.00115 * 6.66914 * 9 8 7 11 11 C 1.49449 * 119.99674 * 186.66398 * 9 8 7 12 12 O 1.21349 * 119.99870 * 6.05967 * 11 9 8 13 13 N 1.34777 * 119.99967 * 186.05227 * 11 9 8 14 14 C 1.46498 * 119.99869 * 185.04850 * 13 11 9 15 15 C 1.53003 * 109.47102 * 185.50254 * 14 13 11 16 16 C 1.50703 * 115.54989 * 31.38933 * 15 14 13 17 17 H 1.07999 * 120.00163 * 273.19000 * 16 15 14 18 18 C 1.37878 * 119.99777 * 93.19105 * 16 15 14 19 19 N 1.31518 * 119.99697 * 354.17518 * 18 16 15 20 20 Si 1.86799 * 120.00051 * 174.17341 * 18 16 15 21 21 H 1.48492 * 109.47049 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46880 * 119.99949 * 20 18 16 23 23 H 1.48497 * 109.47131 * 239.99848 * 20 18 16 24 24 C 1.53009 * 117.49861 * 245.68897 * 15 14 13 25 25 C 1.53001 * 117.50235 * 177.06415 * 15 14 13 26 26 C 1.47146 * 118.03630 * 309.72432 * 8 7 5 27 27 C 1.52875 * 108.61127 * 50.22361 * 26 8 7 28 28 O 1.42960 * 109.29625 * 307.93413 * 27 26 8 29 29 H 1.09001 * 109.46898 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46804 * 299.99274 * 1 2 3 31 31 H 1.08994 * 109.47206 * 59.99542 * 1 2 3 32 32 H 1.09008 * 109.67704 * 52.49920 * 7 5 3 33 33 H 1.08992 * 109.71172 * 291.97127 * 7 5 3 34 34 H 0.97004 * 120.00239 * 5.05233 * 13 11 9 35 35 H 1.08996 * 109.47574 * 65.50465 * 14 13 11 36 36 H 1.08996 * 109.47349 * 305.49983 * 14 13 11 37 37 H 0.97001 * 119.99791 * 184.99730 * 19 18 16 38 38 H 1.08996 * 117.49672 * 359.97438 * 24 15 14 39 39 H 1.08995 * 117.49953 * 145.01840 * 24 15 14 40 40 H 1.08991 * 117.50001 * 214.97881 * 25 15 14 41 41 H 1.09003 * 117.49581 * 359.97438 * 25 15 14 42 42 H 1.08998 * 109.68221 * 170.00622 * 26 8 7 43 43 H 1.09001 * 109.68148 * 290.55194 * 26 8 7 44 44 H 1.09004 * 109.58369 * 187.92776 * 27 26 8 45 45 H 1.08995 * 109.40877 * 67.84035 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9617 0.7073 0.8419 7 6 4.1091 0.6922 -1.3104 8 7 5.5567 0.9501 -1.3684 9 6 6.4279 -0.0426 -1.6372 10 8 6.0185 -1.1399 -1.9544 11 6 7.8983 0.2084 -1.5447 12 8 8.3072 1.2700 -1.1224 13 7 8.7701 -0.7445 -1.9301 14 6 10.2082 -0.5428 -1.7368 15 6 10.9762 -1.7004 -2.3781 16 6 10.3316 -2.3133 -3.5946 17 1 9.6052 -3.1044 -3.4802 18 6 10.6691 -1.8641 -4.8537 19 7 11.4652 -0.8262 -4.9901 20 14 9.9957 -2.7298 -6.3658 21 1 9.1296 -3.8601 -5.9445 22 1 9.1990 -1.7701 -7.1719 23 1 11.1225 -3.2469 -7.1831 24 6 11.7582 -2.6305 -1.4482 25 6 12.5046 -1.6394 -2.3436 26 6 6.0254 2.3222 -1.1181 27 6 5.3890 2.8266 0.1771 28 8 3.9730 2.6409 0.1111 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 3.6168 1.1709 -2.1570 33 1 3.9261 -0.3818 -1.3387 34 1 8.4454 -1.5637 -2.3354 35 1 10.4300 -0.5064 -0.6703 36 1 10.5095 0.3953 -2.2029 37 1 11.6448 -0.4654 -5.8724 38 1 11.7258 -2.4174 -0.3798 39 1 11.8064 -3.6859 -1.7163 40 1 13.0438 -2.0428 -3.2006 41 1 12.9630 -0.7743 -1.8644 42 1 7.1108 2.3270 -1.0186 43 1 5.7294 2.9678 -1.9450 44 1 5.6116 3.8859 0.3053 45 1 5.7908 2.2653 1.0206 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324172780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:00 Heat of formation + Delta-G solvation = -139.227563 kcal Electronic energy + Delta-G solvation = -30203.752190 eV Core-core repulsion = 25803.086382 eV Total energy + Delta-G solvation = -4400.665808 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.23425 -40.52334 -39.03783 -38.06586 -36.89276 -36.73191 -35.09321 -33.43261 -32.29409 -32.06435 -28.91052 -28.02865 -26.96465 -25.69869 -25.25890 -23.59645 -22.10283 -21.20877 -21.02755 -19.99642 -19.30534 -18.28194 -17.65199 -17.31042 -16.91467 -16.70387 -16.28849 -16.12231 -15.85269 -15.49164 -15.23957 -14.92001 -14.71595 -14.59840 -14.31414 -13.94459 -13.56083 -13.35161 -13.20551 -13.02868 -12.81248 -12.54315 -12.45601 -12.21593 -11.91648 -11.69316 -11.29363 -11.17092 -11.07169 -11.01032 -10.91271 -10.70734 -10.56981 -10.52355 -10.27309 -9.68717 -9.13797 -8.90302 -8.83652 -8.66820 -8.55023 -8.09749 -6.18718 -4.29392 1.60021 1.76260 1.94621 2.39516 3.20259 3.30084 3.33689 3.43978 3.59460 3.74878 4.21281 4.28208 4.34342 4.51691 4.72761 4.75587 4.80876 4.84151 4.99738 5.07098 5.10327 5.16900 5.24433 5.30622 5.39186 5.59273 5.86652 5.91277 5.93230 6.09805 6.17468 6.35971 6.37116 6.58904 6.64156 6.73553 6.95311 6.98243 7.05286 7.23301 7.36351 7.44769 7.65862 7.70829 8.06865 8.21219 8.48991 8.74302 9.39669 10.88042 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016162 B = 0.002695 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.994760 B =10386.750302 C =11140.763071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.353 6.353 3 C 0.472 3.528 4 O -0.481 6.481 5 C 0.091 3.909 6 H 0.104 0.896 7 C 0.089 3.911 8 N -0.592 5.592 9 C 0.514 3.486 10 O -0.511 6.511 11 C 0.499 3.501 12 O -0.534 6.534 13 N -0.647 5.647 14 C 0.157 3.843 15 C 0.019 3.981 16 C -0.508 4.508 17 H 0.064 0.936 18 C 0.078 3.922 19 N -0.869 5.869 20 Si 0.888 3.112 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.282 1.282 24 C -0.211 4.211 25 C -0.140 4.140 26 C 0.012 3.988 27 C 0.053 3.947 28 O -0.360 6.360 29 H 0.106 0.894 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.420 0.580 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.262 0.738 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.176 0.824 43 H 0.074 0.926 44 H 0.117 0.883 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.690 3.834 10.127 18.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.270 6.270 3 C 0.312 3.688 4 O -0.366 6.366 5 C 0.030 3.970 6 H 0.121 0.879 7 C -0.034 4.034 8 N -0.327 5.327 9 C 0.298 3.702 10 O -0.385 6.385 11 C 0.279 3.721 12 O -0.416 6.416 13 N -0.296 5.296 14 C 0.034 3.966 15 C 0.018 3.982 16 C -0.545 4.545 17 H 0.082 0.918 18 C -0.127 4.127 19 N -0.505 5.505 20 Si 0.716 3.284 21 H -0.194 1.194 22 H -0.209 1.209 23 H -0.208 1.208 24 C -0.249 4.249 25 C -0.178 4.178 26 C -0.108 4.108 27 C -0.023 4.023 28 O -0.279 6.279 29 H 0.124 0.876 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.135 0.865 34 H 0.260 0.740 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.083 0.917 42 H 0.192 0.808 43 H 0.092 0.908 44 H 0.135 0.865 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.797 4.444 10.089 18.453 hybrid contribution -0.616 -0.712 -1.153 1.489 sum -15.414 3.732 8.936 18.203 Atomic orbital electron populations 1.23342 0.75440 1.04112 1.02785 1.86498 1.23973 1.32388 1.84124 1.22915 0.90635 0.81880 0.73354 1.90699 1.66451 1.36242 1.43210 1.21677 0.88253 0.86737 1.00295 0.87860 1.22133 0.81184 1.03991 0.96119 1.47875 1.05328 1.09835 1.69697 1.20428 0.87985 0.84147 0.77673 1.90764 1.79552 1.23467 1.44734 1.19814 0.86675 0.85030 0.80568 1.90197 1.78213 1.24143 1.49077 1.45990 1.07395 1.20212 1.56020 1.21143 0.77400 1.00554 0.97508 1.19031 0.90863 0.93363 0.94915 1.20349 1.25053 1.20366 0.88760 0.91811 1.24992 0.94058 0.94727 0.98950 1.69996 1.34865 1.22089 1.23504 0.86586 0.78879 0.80019 0.82939 1.19402 1.20931 1.20835 1.23179 1.09818 0.96991 0.94867 1.22455 0.96317 0.98905 1.00139 1.23974 1.08419 0.80770 0.97683 1.23089 0.78877 1.03026 0.97321 1.88014 1.23735 1.21545 1.94568 0.87602 0.91687 0.91601 0.89755 0.86549 0.73984 0.93437 0.90862 0.92790 0.91603 0.90234 0.89417 0.91690 0.80805 0.90764 0.86536 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.46 10.56 -39.27 -0.41 -3.87 16 3 C 0.47 5.46 7.29 36.00 0.26 5.72 16 4 O -0.48 -6.87 16.26 -25.45 -0.41 -7.29 16 5 C 0.09 1.00 3.30 -27.74 -0.09 0.91 16 6 H 0.10 0.99 8.14 -51.92 -0.42 0.56 16 7 C 0.09 1.05 5.89 -3.53 -0.02 1.02 16 8 N -0.59 -8.05 3.03 -173.05 -0.52 -8.57 16 9 C 0.51 8.43 7.76 -11.58 -0.09 8.34 16 10 O -0.51 -9.30 16.01 5.50 0.09 -9.21 16 11 C 0.50 8.91 7.78 -11.59 -0.09 8.82 16 12 O -0.53 -9.62 13.08 5.50 0.07 -9.54 16 13 N -0.65 -12.58 5.27 -60.73 -0.32 -12.90 16 14 C 0.16 3.22 5.86 -4.04 -0.02 3.20 16 15 C 0.02 0.42 1.95 -155.65 -0.30 0.12 16 16 C -0.51 -12.52 7.25 -34.44 -0.25 -12.77 16 17 H 0.06 1.57 7.73 -52.49 -0.41 1.16 16 18 C 0.08 1.99 5.36 -17.82 -0.10 1.89 16 19 N -0.87 -23.05 12.44 55.43 0.69 -22.36 16 20 Si 0.89 20.10 29.55 -169.99 -5.02 15.07 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 C -0.21 -4.22 9.88 -26.72 -0.26 -4.48 16 25 C -0.14 -3.05 8.99 -26.73 -0.24 -3.29 16 26 C 0.01 0.15 6.47 -3.75 -0.02 0.12 16 27 C 0.05 0.54 6.97 37.09 0.26 0.80 16 28 O -0.36 -4.38 9.92 -55.11 -0.55 -4.93 16 29 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 31 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 32 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 33 H 0.12 1.36 7.14 -51.93 -0.37 0.99 16 34 H 0.42 8.46 6.68 -40.82 -0.27 8.18 16 35 H 0.05 0.90 7.88 -51.93 -0.41 0.49 16 36 H 0.07 1.64 8.09 -51.93 -0.42 1.22 16 37 H 0.26 6.72 8.32 -40.82 -0.34 6.38 16 38 H 0.07 1.17 8.04 -51.93 -0.42 0.76 16 39 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 40 H 0.09 2.08 8.02 -51.93 -0.42 1.66 16 41 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 42 H 0.18 2.39 3.82 -56.57 -0.22 2.17 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 379.85 15.07 5.72 5.72 Total: -1.00 -29.70 379.85 -6.86 -36.56 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -6.29 Total: 9.59 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 0.09 Total: 11.73 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: -0.15 Total: -43.83 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -1.22 Total: -34.84 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.70 -6.86 -36.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324172780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.667 kcal (2) G-P(sol) polarization free energy of solvation -29.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds