Wall clock time and date at job start Sat Apr 11 2020 06:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34235 * 116.99875 * 2 1 4 4 O 1.20821 * 119.99797 * 0.02562 * 3 2 1 5 5 C 1.50693 * 119.99818 * 180.02562 * 3 2 1 6 6 H 1.09009 * 109.55514 * 304.87493 * 5 3 2 7 7 C 1.53293 * 109.51641 * 65.00135 * 5 3 2 8 8 N 1.47152 * 108.38832 * 172.22100 * 7 5 3 9 9 C 1.34779 * 120.97761 * 129.44223 * 8 7 5 10 10 O 1.21341 * 120.00115 * 6.66914 * 9 8 7 11 11 C 1.49449 * 119.99674 * 186.66398 * 9 8 7 12 12 O 1.21349 * 119.99870 * 6.05967 * 11 9 8 13 13 N 1.34777 * 119.99967 * 186.05227 * 11 9 8 14 14 C 1.46498 * 119.99869 * 185.04850 * 13 11 9 15 15 C 1.53003 * 109.47102 * 185.50254 * 14 13 11 16 16 C 1.50703 * 115.54989 * 31.38933 * 15 14 13 17 17 H 1.07999 * 120.00163 * 273.19000 * 16 15 14 18 18 C 1.37878 * 119.99777 * 93.19105 * 16 15 14 19 19 N 1.31518 * 119.99697 * 354.17518 * 18 16 15 20 20 Si 1.86799 * 120.00051 * 174.17341 * 18 16 15 21 21 H 1.48492 * 109.47049 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46880 * 119.99949 * 20 18 16 23 23 H 1.48497 * 109.47131 * 239.99848 * 20 18 16 24 24 C 1.53009 * 117.49861 * 245.68897 * 15 14 13 25 25 C 1.53001 * 117.50235 * 177.06415 * 15 14 13 26 26 C 1.47146 * 118.03630 * 309.72432 * 8 7 5 27 27 C 1.52875 * 108.61127 * 50.22361 * 26 8 7 28 28 O 1.42960 * 109.29625 * 307.93413 * 27 26 8 29 29 H 1.09001 * 109.46898 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46804 * 299.99274 * 1 2 3 31 31 H 1.08994 * 109.47206 * 59.99542 * 1 2 3 32 32 H 1.09008 * 109.67704 * 52.49920 * 7 5 3 33 33 H 1.08992 * 109.71172 * 291.97127 * 7 5 3 34 34 H 0.97004 * 120.00239 * 5.05233 * 13 11 9 35 35 H 1.08996 * 109.47574 * 65.50465 * 14 13 11 36 36 H 1.08996 * 109.47349 * 305.49983 * 14 13 11 37 37 H 0.97001 * 119.99791 * 184.99730 * 19 18 16 38 38 H 1.08996 * 117.49672 * 359.97438 * 24 15 14 39 39 H 1.08995 * 117.49953 * 145.01840 * 24 15 14 40 40 H 1.08991 * 117.50001 * 214.97881 * 25 15 14 41 41 H 1.09003 * 117.49581 * 359.97438 * 25 15 14 42 42 H 1.08998 * 109.68221 * 170.00622 * 26 8 7 43 43 H 1.09001 * 109.68148 * 290.55194 * 26 8 7 44 44 H 1.09004 * 109.58369 * 187.92776 * 27 26 8 45 45 H 1.08995 * 109.40877 * 67.84035 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9617 0.7073 0.8419 7 6 4.1091 0.6922 -1.3104 8 7 5.5567 0.9501 -1.3684 9 6 6.4279 -0.0426 -1.6372 10 8 6.0185 -1.1399 -1.9544 11 6 7.8983 0.2084 -1.5447 12 8 8.3072 1.2700 -1.1224 13 7 8.7701 -0.7445 -1.9301 14 6 10.2082 -0.5428 -1.7368 15 6 10.9762 -1.7004 -2.3781 16 6 10.3316 -2.3133 -3.5946 17 1 9.6052 -3.1044 -3.4802 18 6 10.6691 -1.8641 -4.8537 19 7 11.4652 -0.8262 -4.9901 20 14 9.9957 -2.7298 -6.3658 21 1 9.1296 -3.8601 -5.9445 22 1 9.1990 -1.7701 -7.1719 23 1 11.1225 -3.2469 -7.1831 24 6 11.7582 -2.6305 -1.4482 25 6 12.5046 -1.6394 -2.3436 26 6 6.0254 2.3222 -1.1181 27 6 5.3890 2.8266 0.1771 28 8 3.9730 2.6409 0.1111 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 3.6168 1.1709 -2.1570 33 1 3.9261 -0.3818 -1.3387 34 1 8.4454 -1.5637 -2.3354 35 1 10.4300 -0.5064 -0.6703 36 1 10.5095 0.3953 -2.2029 37 1 11.6448 -0.4654 -5.8724 38 1 11.7258 -2.4174 -0.3798 39 1 11.8064 -3.6859 -1.7163 40 1 13.0438 -2.0428 -3.2006 41 1 12.9630 -0.7743 -1.8644 42 1 7.1108 2.3270 -1.0186 43 1 5.7294 2.9678 -1.9450 44 1 5.6116 3.8859 0.3053 45 1 5.7908 2.2653 1.0206 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324172780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:59 Heat of formation + Delta-G solvation = -158.577484 kcal Electronic energy + Delta-G solvation = -30204.591266 eV Core-core repulsion = 25803.086382 eV Total energy + Delta-G solvation = -4401.504883 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.28858 -41.60734 -40.16786 -39.32878 -38.51501 -37.62885 -36.25460 -34.89297 -33.97512 -33.21056 -29.86860 -29.01481 -28.25339 -27.42662 -26.38686 -24.71258 -23.19890 -22.85588 -21.96483 -21.53899 -20.77446 -19.31207 -18.68074 -18.46318 -18.10321 -17.71804 -17.69274 -17.12161 -17.09073 -16.83649 -16.66103 -16.18836 -16.09669 -15.80261 -15.46462 -15.17395 -14.86590 -14.46948 -14.36639 -14.30174 -14.06609 -13.80620 -13.68482 -13.47654 -13.10110 -12.91774 -12.86714 -12.78835 -12.35192 -12.31293 -12.01059 -11.95433 -11.89640 -11.72945 -11.44642 -11.41918 -10.91664 -10.46285 -10.27329 -10.18839 -9.92486 -9.74402 -8.12416 -6.25560 0.27695 0.81661 1.13760 1.25251 1.39067 1.44963 1.53186 2.08834 2.37199 2.42816 2.84239 3.13457 3.27768 3.35941 3.53529 3.55281 3.68683 3.89833 4.14822 4.16069 4.25030 4.27021 4.31857 4.39581 4.47942 4.53255 4.67067 4.70147 4.70567 4.74559 4.84920 4.99501 5.04172 5.08888 5.15590 5.29302 5.44863 5.62507 5.71274 5.75184 5.77041 5.83899 6.29187 6.36737 6.52067 6.66947 6.82814 7.01257 7.44859 8.93987 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016162 B = 0.002695 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.994760 B =10386.750302 C =11140.763071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.478 3.522 4 O -0.513 6.513 5 C 0.093 3.907 6 H 0.121 0.879 7 C 0.090 3.910 8 N -0.583 5.583 9 C 0.517 3.483 10 O -0.534 6.534 11 C 0.499 3.501 12 O -0.536 6.536 13 N -0.657 5.657 14 C 0.170 3.830 15 C -0.006 4.006 16 C -0.508 4.508 17 H 0.060 0.940 18 C 0.036 3.964 19 N -0.898 5.898 20 Si 0.939 3.061 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.284 1.284 24 C -0.185 4.185 25 C -0.148 4.148 26 C 0.011 3.989 27 C 0.057 3.943 28 O -0.374 6.374 29 H 0.136 0.864 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.118 0.882 34 H 0.416 0.584 35 H 0.067 0.933 36 H 0.047 0.953 37 H 0.259 0.741 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.163 0.837 43 H 0.081 0.919 44 H 0.141 0.859 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.912 3.614 11.358 19.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.270 6.270 3 C 0.320 3.680 4 O -0.400 6.400 5 C 0.033 3.967 6 H 0.139 0.861 7 C -0.032 4.032 8 N -0.318 5.318 9 C 0.300 3.700 10 O -0.410 6.410 11 C 0.280 3.720 12 O -0.418 6.418 13 N -0.306 5.306 14 C 0.046 3.954 15 C -0.006 4.006 16 C -0.546 4.546 17 H 0.078 0.922 18 C -0.166 4.166 19 N -0.535 5.535 20 Si 0.766 3.234 21 H -0.189 1.189 22 H -0.213 1.213 23 H -0.210 1.210 24 C -0.222 4.222 25 C -0.186 4.186 26 C -0.109 4.109 27 C -0.019 4.019 28 O -0.293 6.293 29 H 0.154 0.846 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.136 0.864 34 H 0.255 0.745 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.179 0.821 43 H 0.099 0.901 44 H 0.158 0.842 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.041 4.235 11.342 20.097 hybrid contribution -0.300 -0.627 -1.492 1.646 sum -16.342 3.608 9.849 19.418 Atomic orbital electron populations 1.23666 0.73688 1.06165 1.02946 1.86497 1.25699 1.31337 1.83495 1.22974 0.90728 0.81883 0.72435 1.90687 1.67108 1.37308 1.44913 1.21717 0.88114 0.86570 1.00310 0.86127 1.22233 0.79744 1.04305 0.96961 1.47926 1.05896 1.09805 1.68144 1.20092 0.87451 0.84404 0.78040 1.90755 1.79604 1.24395 1.46232 1.20088 0.87371 0.84549 0.79949 1.90236 1.78774 1.24014 1.48778 1.45942 1.07167 1.20546 1.56952 1.20897 0.77910 0.98473 0.98086 1.19144 0.91161 0.94889 0.95428 1.20592 1.24462 1.19804 0.89768 0.92209 1.25568 0.94630 0.95305 1.01147 1.70089 1.36370 1.23392 1.23618 0.85798 0.78170 0.79098 0.80380 1.18921 1.21320 1.20975 1.23178 1.06749 0.96303 0.95946 1.22362 0.95926 1.00145 1.00136 1.23978 1.07673 0.79984 0.99260 1.23194 0.77884 1.04569 0.96217 1.88015 1.24633 1.22107 1.94530 0.84636 0.91417 0.91633 0.89239 0.86390 0.74464 0.91492 0.93426 0.93133 0.88692 0.90328 0.92036 0.90483 0.82146 0.90075 0.84180 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.52 16 2 O -0.35 -6.31 10.56 -51.47 -0.54 -6.85 16 3 C 0.48 10.37 7.29 71.23 0.52 10.89 16 4 O -0.51 -14.14 16.26 28.39 0.46 -13.68 16 5 C 0.09 1.88 3.30 29.94 0.10 1.97 16 6 H 0.12 2.02 8.14 -2.38 -0.02 2.00 16 7 C 0.09 1.98 5.89 86.35 0.51 2.48 16 8 N -0.58 -15.04 3.03 -819.76 -2.48 -17.52 16 9 C 0.52 16.50 7.76 87.27 0.68 17.17 16 10 O -0.53 -19.06 16.01 -3.22 -0.05 -19.11 16 11 C 0.50 17.53 7.78 87.27 0.68 18.21 16 12 O -0.54 -18.87 13.08 -3.24 -0.04 -18.91 16 13 N -0.66 -25.31 5.27 -464.42 -2.45 -27.76 16 14 C 0.17 6.87 5.86 86.38 0.51 7.38 16 15 C -0.01 -0.25 1.95 -52.92 -0.10 -0.35 16 16 C -0.51 -25.06 7.25 25.60 0.19 -24.87 16 17 H 0.06 2.93 7.73 -2.91 -0.02 2.91 16 18 C 0.04 1.82 5.36 84.65 0.45 2.27 16 19 N -0.90 -48.37 12.44 21.45 0.27 -48.10 16 20 Si 0.94 41.53 29.55 68.60 2.03 43.56 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 22 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 C -0.18 -7.04 9.88 30.60 0.30 -6.74 16 25 C -0.15 -6.37 8.99 30.60 0.28 -6.09 16 26 C 0.01 0.26 6.47 86.21 0.56 0.81 16 27 C 0.06 1.04 6.97 71.94 0.50 1.54 16 28 O -0.37 -8.35 9.92 -129.97 -1.29 -9.64 16 29 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.77 8.13 -2.39 -0.02 0.75 16 31 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 32 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.12 2.59 7.14 -2.39 -0.02 2.57 16 34 H 0.42 16.73 6.68 -92.71 -0.62 16.11 16 35 H 0.07 2.41 7.88 -2.39 -0.02 2.39 16 36 H 0.05 2.15 8.09 -2.39 -0.02 2.13 16 37 H 0.26 13.55 8.32 -92.71 -0.77 12.78 16 38 H 0.09 3.08 8.04 -2.39 -0.02 3.06 16 39 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.06 2.96 8.02 -2.39 -0.02 2.94 16 41 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 42 H 0.16 4.20 3.82 -75.87 -0.29 3.91 16 43 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.14 1.87 8.14 -2.38 -0.02 1.85 16 45 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -63.08 379.85 2.39 -60.69 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 0.13 Total: 31.13 kcal Atomic # 6 Polarization: 19.84 SS G_CDS: 6.36 Total: 26.20 kcal Atomic # 7 Polarization: -88.72 SS G_CDS: -4.66 Total: -93.38 kcal Atomic # 8 Polarization: -66.73 SS G_CDS: -1.47 Total: -68.19 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -63.08 2.39 -60.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324172780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.888 kcal (2) G-P(sol) polarization free energy of solvation -63.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds