Wall clock time and date at job start Sat Apr 11 2020 05:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99786 * 2 1 4 4 H 1.48502 * 109.47236 * 239.99957 * 3 2 1 5 5 H 1.48500 * 109.47118 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46754 * 120.00063 * 3 2 1 7 7 C 1.37869 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00522 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99884 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.88662 * 62.42866 * 9 7 2 11 11 C 1.55167 * 111.03649 * 186.33020 * 9 7 2 12 12 C 1.54334 * 103.01574 * 153.39577 * 11 9 7 13 13 N 1.47021 * 107.26846 * 338.14034 * 12 11 9 14 14 C 1.34773 * 125.64414 * 178.85213 * 13 12 11 15 15 O 1.21591 * 120.00000 * 179.69151 * 14 13 12 16 16 N 1.34777 * 120.00462 * 359.69153 * 14 13 12 17 17 C 1.46500 * 120.00376 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47473 * 180.02562 * 17 16 14 19 19 C 1.53000 * 109.47060 * 180.02562 * 18 17 16 20 20 N 1.46499 * 109.46840 * 180.02562 * 19 18 17 21 21 C 1.34766 * 124.17656 * 269.72313 * 20 19 18 22 22 O 1.21232 * 127.15980 * 359.97438 * 21 20 19 23 23 C 1.51581 * 105.68706 * 179.97438 * 21 20 19 24 24 N 1.47316 * 103.59416 * 0.31691 * 23 21 20 25 25 C 1.33792 * 124.18178 * 90.02322 * 20 19 18 26 26 O 1.21544 * 123.77064 * 359.96141 * 25 20 19 27 27 C 1.47416 * 108.70200 * 358.58623 * 13 12 11 28 28 H 0.97004 * 120.00294 * 359.97438 * 1 2 3 29 29 H 0.96694 * 113.99831 * 297.57289 * 10 9 7 30 30 H 1.08996 * 110.71916 * 271.95556 * 11 9 7 31 31 H 1.08997 * 110.71508 * 35.22894 * 11 9 7 32 32 H 1.09007 * 109.98705 * 218.66083 * 12 11 9 33 33 H 1.09003 * 109.77639 * 97.50015 * 12 11 9 34 34 H 0.97004 * 120.00228 * 0.02562 * 16 14 13 35 35 H 1.09002 * 109.47129 * 59.99747 * 17 16 14 36 36 H 1.08998 * 109.46845 * 300.00553 * 17 16 14 37 37 H 1.09002 * 109.47153 * 59.99757 * 18 17 16 38 38 H 1.09001 * 109.46832 * 299.99948 * 18 17 16 39 39 H 1.09001 * 109.47194 * 299.99650 * 19 18 17 40 40 H 1.08992 * 109.47399 * 59.99823 * 19 18 17 41 41 H 1.09003 * 110.76535 * 241.71516 * 23 21 20 42 42 H 1.09002 * 110.57149 * 118.82925 * 23 21 20 43 43 H 0.96996 * 126.69030 * 179.76757 * 24 23 21 44 44 H 1.09009 * 110.36287 * 143.19361 * 27 13 12 45 45 H 1.09003 * 110.37146 * 265.40630 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 8 0.4615 -2.6305 -1.1856 11 6 2.2190 -3.7012 0.1575 12 6 1.3285 -4.7808 0.8083 13 7 0.2053 -4.0877 1.4561 14 6 -0.8080 -4.6815 2.1171 15 8 -1.6843 -4.0055 2.6207 16 7 -0.8500 -6.0247 2.2201 17 6 -1.9518 -6.6702 2.9382 18 6 -1.7606 -8.1879 2.9078 19 6 -2.9116 -8.8620 3.6572 20 7 -2.7282 -10.3152 3.6286 21 6 -3.2227 -11.1219 2.6690 22 8 -3.8787 -10.7945 1.7034 23 6 -2.7881 -12.5237 3.0479 24 7 -2.0345 -12.3265 4.2982 25 6 -2.0540 -11.0061 4.5549 26 8 -1.5201 -10.4978 5.5213 27 6 0.3745 -2.6353 1.2682 28 1 -0.4851 0.8401 0.0004 29 1 -0.2243 -1.9552 -1.2779 30 1 2.5843 -4.0336 -0.8141 31 1 3.0491 -3.4434 0.8152 32 1 1.8998 -5.3364 1.5520 33 1 0.9532 -5.4599 0.0428 34 1 -0.1508 -6.5641 1.8188 35 1 -2.8971 -6.4130 2.4603 36 1 -1.9622 -6.3263 3.9725 37 1 -0.8153 -8.4447 3.3860 38 1 -1.7499 -8.5320 1.8736 39 1 -2.9227 -8.5179 4.6914 40 1 -3.8566 -8.6052 3.1787 41 1 -2.1468 -12.9512 2.2770 42 1 -3.6560 -13.1605 3.2196 43 1 -1.6074 -13.0145 4.8322 44 1 -0.5932 -2.1575 1.1143 45 1 0.8802 -2.1977 2.1290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325966247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:19 Heat of formation + Delta-G solvation = -114.685739 kcal Electronic energy + Delta-G solvation = -29423.604754 eV Core-core repulsion = 25056.295910 eV Total energy + Delta-G solvation = -4367.308843 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.76457 -39.62664 -39.01559 -37.51804 -36.54807 -36.30335 -34.47753 -34.18325 -32.19920 -31.58905 -29.92129 -28.29262 -27.76270 -26.38285 -24.76479 -23.35930 -22.75232 -22.07377 -20.86137 -19.63739 -19.39974 -18.50388 -17.71495 -17.37215 -17.18184 -16.97283 -16.23719 -15.80646 -15.70329 -15.43363 -14.95809 -14.86746 -14.65812 -14.54611 -14.41203 -14.13081 -13.88327 -13.51466 -13.07739 -12.87712 -12.71666 -12.52261 -12.11350 -11.92193 -11.62638 -11.45256 -11.33066 -11.19042 -10.99262 -10.79877 -10.71275 -10.58291 -10.46859 -10.29411 -10.16933 -10.03005 -9.58884 -9.33344 -8.81868 -8.66293 -8.32952 -7.65608 -6.24169 -4.34196 1.14967 1.70204 2.51878 2.62344 3.14664 3.25137 3.30375 3.32174 3.48837 3.78200 4.25497 4.27929 4.40931 4.43622 4.56039 4.64094 4.78498 4.91515 5.02605 5.05263 5.22120 5.31331 5.43235 5.52918 5.66784 5.77328 5.86384 5.91325 6.03759 6.14811 6.21964 6.53621 6.55614 6.72863 6.76145 6.88554 6.91818 6.99727 7.26706 7.35765 7.63238 7.67114 7.77517 8.06662 8.56217 8.69875 9.16228 9.33196 9.41402 10.82789 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027917 B = 0.001918 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.714682 B =14593.638888 C =14628.327602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.105 3.895 13 N -0.628 5.628 14 C 0.716 3.284 15 O -0.596 6.596 16 N -0.752 5.752 17 C 0.146 3.854 18 C -0.147 4.147 19 C 0.123 3.877 20 N -0.576 5.576 21 C 0.518 3.482 22 O -0.463 6.463 23 C 0.062 3.938 24 N -0.731 5.731 25 C 0.700 3.300 26 O -0.538 6.538 27 C 0.114 3.886 28 H 0.271 0.729 29 H 0.381 0.619 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.393 0.607 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.442 0.558 44 H 0.085 0.915 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.161 -26.647 6.324 27.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.084 0.916 9 C 0.208 3.792 10 O -0.391 6.391 11 C -0.154 4.154 12 C -0.018 4.018 13 N -0.365 5.365 14 C 0.418 3.582 15 O -0.475 6.475 16 N -0.409 5.409 17 C 0.021 3.979 18 C -0.186 4.186 19 C 0.001 3.999 20 N -0.322 5.322 21 C 0.305 3.695 22 O -0.332 6.332 23 C -0.066 4.066 24 N -0.396 5.396 25 C 0.400 3.600 26 O -0.410 6.410 27 C -0.008 4.008 28 H 0.081 0.919 29 H 0.231 0.769 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.226 0.774 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.286 0.714 44 H 0.104 0.896 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.759 -25.980 6.623 27.230 hybrid contribution 0.630 0.673 0.142 0.933 sum -4.129 -25.307 6.765 26.519 Atomic orbital electron populations 1.69713 1.05962 1.28001 1.49310 1.25083 0.95045 0.99739 0.93387 0.86463 0.79512 0.82149 0.78759 1.20036 1.21105 1.20041 1.21408 0.93572 0.90060 1.52635 0.91606 1.19631 0.86651 0.91520 0.81424 1.86099 1.51560 1.57179 1.44306 1.22591 0.97552 0.95205 1.00033 1.21927 0.88327 0.96087 0.95500 1.47929 1.23197 1.09783 1.55593 1.15489 0.81907 0.81258 0.79508 1.90888 1.39655 1.63257 1.53711 1.45040 1.28881 1.05529 1.61479 1.20893 0.90270 0.89383 0.97404 1.22120 0.99365 0.95427 1.01692 1.21611 1.00015 0.74477 1.03769 1.46399 1.50657 1.10269 1.24887 1.20927 0.78409 0.88236 0.81891 1.90868 1.35507 1.80646 1.26224 1.22480 0.99269 0.96294 0.88516 1.45442 1.59038 1.07557 1.27553 1.15906 0.79265 0.82298 0.82529 1.91058 1.48678 1.72209 1.29082 1.23132 1.02560 0.75626 0.99501 0.91940 0.76917 0.90796 0.90441 0.93175 0.92723 0.77381 0.91412 0.91398 0.90421 0.90638 0.87909 0.88040 0.85790 0.85862 0.71403 0.89638 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.06 10.69 55.43 0.59 -23.46 16 2 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 3 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -14.07 8.27 -34.44 -0.28 -14.35 16 8 H 0.07 1.68 7.79 -52.49 -0.41 1.27 16 9 C 0.25 6.05 0.87 -89.62 -0.08 5.97 16 10 O -0.58 -14.96 13.16 -35.23 -0.46 -15.42 16 11 C -0.12 -2.30 6.13 -24.89 -0.15 -2.45 16 12 C 0.11 1.85 6.15 -3.06 -0.02 1.83 16 13 N -0.63 -13.28 3.33 -176.23 -0.59 -13.86 16 14 C 0.72 14.90 8.49 -86.92 -0.74 14.16 16 15 O -0.60 -14.72 16.60 5.29 0.09 -14.63 16 16 N -0.75 -11.48 5.52 -65.23 -0.36 -11.84 16 17 C 0.15 1.82 5.67 -4.04 -0.02 1.80 16 18 C -0.15 -1.35 5.65 -26.73 -0.15 -1.50 16 19 C 0.12 1.00 5.70 -4.04 -0.02 0.98 16 20 N -0.58 -4.45 2.60 -120.73 -0.31 -4.77 16 21 C 0.52 3.56 8.31 -10.56 -0.09 3.47 16 22 O -0.46 -4.72 17.75 5.60 0.10 -4.62 16 23 C 0.06 0.15 7.97 -4.31 -0.03 0.11 16 24 N -0.73 -2.80 6.58 -65.73 -0.43 -3.23 16 25 C 0.70 5.72 8.62 -88.02 -0.76 4.96 16 26 O -0.54 -6.53 17.48 5.33 0.09 -6.44 16 27 C 0.11 2.79 5.38 -2.54 -0.01 2.78 16 28 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.38 10.06 7.56 45.56 0.34 10.41 16 30 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.39 5.05 7.46 -40.82 -0.30 4.75 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.83 7.86 -51.93 -0.41 0.42 16 40 H 0.10 0.77 8.00 -51.93 -0.42 0.35 16 41 H 0.12 0.04 8.14 -51.93 -0.42 -0.38 16 42 H 0.12 0.01 8.14 -51.93 -0.42 -0.42 16 43 H 0.44 0.69 8.96 -40.82 -0.37 0.32 16 44 H 0.09 2.37 7.33 -51.92 -0.38 1.99 16 45 H 0.06 1.45 8.03 -51.93 -0.42 1.03 16 LS Contribution 379.71 15.07 5.72 5.72 Total: -1.00 -35.70 379.71 -8.75 -44.46 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -5.71 Total: 13.10 kcal Atomic # 6 Polarization: 21.98 SS G_CDS: -2.46 Total: 19.53 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -1.10 Total: -57.17 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -0.18 Total: -41.12 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.70 -8.75 -44.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325966247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.227 kcal (2) G-P(sol) polarization free energy of solvation -35.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds