Wall clock time and date at job start Sat Apr 11 2020 05:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99786 * 2 1 4 4 H 1.48502 * 109.47236 * 239.99957 * 3 2 1 5 5 H 1.48500 * 109.47118 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46754 * 120.00063 * 3 2 1 7 7 C 1.37869 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00522 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99884 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.88662 * 62.42866 * 9 7 2 11 11 C 1.55167 * 111.03649 * 186.33020 * 9 7 2 12 12 C 1.54334 * 103.01574 * 153.39577 * 11 9 7 13 13 N 1.47021 * 107.26846 * 338.14034 * 12 11 9 14 14 C 1.34773 * 125.64414 * 178.85213 * 13 12 11 15 15 O 1.21591 * 120.00000 * 179.69151 * 14 13 12 16 16 N 1.34777 * 120.00462 * 359.69153 * 14 13 12 17 17 C 1.46500 * 120.00376 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47473 * 180.02562 * 17 16 14 19 19 C 1.53000 * 109.47060 * 180.02562 * 18 17 16 20 20 N 1.46499 * 109.46840 * 180.02562 * 19 18 17 21 21 C 1.34766 * 124.17656 * 269.72313 * 20 19 18 22 22 O 1.21232 * 127.15980 * 359.97438 * 21 20 19 23 23 C 1.51581 * 105.68706 * 179.97438 * 21 20 19 24 24 N 1.47316 * 103.59416 * 0.31691 * 23 21 20 25 25 C 1.33792 * 124.18178 * 90.02322 * 20 19 18 26 26 O 1.21544 * 123.77064 * 359.96141 * 25 20 19 27 27 C 1.47416 * 108.70200 * 358.58623 * 13 12 11 28 28 H 0.97004 * 120.00294 * 359.97438 * 1 2 3 29 29 H 0.96694 * 113.99831 * 297.57289 * 10 9 7 30 30 H 1.08996 * 110.71916 * 271.95556 * 11 9 7 31 31 H 1.08997 * 110.71508 * 35.22894 * 11 9 7 32 32 H 1.09007 * 109.98705 * 218.66083 * 12 11 9 33 33 H 1.09003 * 109.77639 * 97.50015 * 12 11 9 34 34 H 0.97004 * 120.00228 * 0.02562 * 16 14 13 35 35 H 1.09002 * 109.47129 * 59.99747 * 17 16 14 36 36 H 1.08998 * 109.46845 * 300.00553 * 17 16 14 37 37 H 1.09002 * 109.47153 * 59.99757 * 18 17 16 38 38 H 1.09001 * 109.46832 * 299.99948 * 18 17 16 39 39 H 1.09001 * 109.47194 * 299.99650 * 19 18 17 40 40 H 1.08992 * 109.47399 * 59.99823 * 19 18 17 41 41 H 1.09003 * 110.76535 * 241.71516 * 23 21 20 42 42 H 1.09002 * 110.57149 * 118.82925 * 23 21 20 43 43 H 0.96996 * 126.69030 * 179.76757 * 24 23 21 44 44 H 1.09009 * 110.36287 * 143.19361 * 27 13 12 45 45 H 1.09003 * 110.37146 * 265.40630 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 8 0.4615 -2.6305 -1.1856 11 6 2.2190 -3.7012 0.1575 12 6 1.3285 -4.7808 0.8083 13 7 0.2053 -4.0877 1.4561 14 6 -0.8080 -4.6815 2.1171 15 8 -1.6843 -4.0055 2.6207 16 7 -0.8500 -6.0247 2.2201 17 6 -1.9518 -6.6702 2.9382 18 6 -1.7606 -8.1879 2.9078 19 6 -2.9116 -8.8620 3.6572 20 7 -2.7282 -10.3152 3.6286 21 6 -3.2227 -11.1219 2.6690 22 8 -3.8787 -10.7945 1.7034 23 6 -2.7881 -12.5237 3.0479 24 7 -2.0345 -12.3265 4.2982 25 6 -2.0540 -11.0061 4.5549 26 8 -1.5201 -10.4978 5.5213 27 6 0.3745 -2.6353 1.2682 28 1 -0.4851 0.8401 0.0004 29 1 -0.2243 -1.9552 -1.2779 30 1 2.5843 -4.0336 -0.8141 31 1 3.0491 -3.4434 0.8152 32 1 1.8998 -5.3364 1.5520 33 1 0.9532 -5.4599 0.0428 34 1 -0.1508 -6.5641 1.8188 35 1 -2.8971 -6.4130 2.4603 36 1 -1.9622 -6.3263 3.9725 37 1 -0.8153 -8.4447 3.3860 38 1 -1.7499 -8.5320 1.8736 39 1 -2.9227 -8.5179 4.6914 40 1 -3.8566 -8.6052 3.1787 41 1 -2.1468 -12.9512 2.2770 42 1 -3.6560 -13.1605 3.2196 43 1 -1.6074 -13.0145 4.8322 44 1 -0.5932 -2.1575 1.1143 45 1 0.8802 -2.1977 2.1290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325966247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:18 Heat of formation + Delta-G solvation = -145.504492 kcal Electronic energy + Delta-G solvation = -29424.941155 eV Core-core repulsion = 25056.295910 eV Total energy + Delta-G solvation = -4368.645245 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.30003 -41.25280 -39.64792 -39.19570 -37.25430 -37.17000 -36.03915 -35.48718 -34.22500 -32.68585 -31.47130 -29.55003 -28.69908 -27.57722 -26.37322 -24.24084 -23.85866 -23.14295 -21.53369 -21.46670 -20.82654 -19.27280 -19.03439 -18.81886 -18.02528 -17.78121 -17.34302 -17.06789 -16.91608 -16.43409 -16.27607 -16.22703 -16.09339 -15.41839 -15.28215 -15.00538 -14.92851 -14.76282 -14.62052 -14.45696 -13.83412 -13.65979 -13.52119 -13.48209 -13.23222 -12.88289 -12.79791 -12.52458 -12.32622 -12.26841 -12.08700 -12.06257 -12.03242 -11.39092 -11.31117 -11.18405 -10.94303 -10.65269 -10.39601 -10.33369 -10.21571 -9.33396 -8.23314 -6.40882 0.63348 1.15525 1.44036 1.44479 1.52887 1.68013 1.95442 2.14035 2.30416 2.39129 3.02269 3.04965 3.10350 3.70243 3.77007 3.79979 3.95089 4.08502 4.09337 4.19497 4.34209 4.34749 4.38094 4.43263 4.49717 4.60905 4.64915 4.71039 4.77210 4.97709 5.02320 5.07355 5.10805 5.29995 5.37909 5.46356 5.47181 5.76660 5.86174 6.04871 6.05485 6.17411 6.39817 6.66323 7.04881 7.11888 7.28123 7.35723 7.55574 8.81635 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027917 B = 0.001918 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.714682 B =14593.638888 C =14628.327602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.024 3.976 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.556 4.556 8 H 0.070 0.930 9 C 0.232 3.768 10 O -0.587 6.587 11 C -0.110 4.110 12 C 0.107 3.893 13 N -0.634 5.634 14 C 0.709 3.291 15 O -0.644 6.644 16 N -0.731 5.731 17 C 0.144 3.856 18 C -0.127 4.127 19 C 0.121 3.879 20 N -0.579 5.579 21 C 0.514 3.486 22 O -0.502 6.502 23 C 0.074 3.926 24 N -0.709 5.709 25 C 0.694 3.306 26 O -0.585 6.585 27 C 0.128 3.872 28 H 0.269 0.731 29 H 0.372 0.628 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.408 0.592 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.157 0.843 42 H 0.158 0.842 43 H 0.454 0.546 44 H 0.043 0.957 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.832 -29.700 6.111 30.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.177 4.177 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.594 4.594 8 H 0.088 0.912 9 C 0.191 3.809 10 O -0.395 6.395 11 C -0.148 4.148 12 C -0.015 4.015 13 N -0.371 5.371 14 C 0.411 3.589 15 O -0.527 6.527 16 N -0.388 5.388 17 C 0.020 3.980 18 C -0.166 4.166 19 C -0.001 4.001 20 N -0.325 5.325 21 C 0.303 3.697 22 O -0.373 6.373 23 C -0.052 4.052 24 N -0.375 5.375 25 C 0.395 3.605 26 O -0.461 6.461 27 C 0.004 3.996 28 H 0.078 0.922 29 H 0.221 0.779 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.245 0.755 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.174 0.826 42 H 0.175 0.825 43 H 0.301 0.699 44 H 0.062 0.938 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.391 -29.163 6.392 30.047 hybrid contribution 0.177 1.557 0.207 1.581 sum -3.214 -27.606 6.598 28.565 Atomic orbital electron populations 1.69846 1.07208 1.28434 1.49972 1.25858 0.95760 1.02932 0.93123 0.85503 0.78264 0.78272 0.78952 1.19374 1.21246 1.19468 1.21765 0.93967 0.91185 1.52510 0.91199 1.19873 0.87193 0.93219 0.80574 1.86090 1.51461 1.56807 1.45117 1.22597 0.97187 0.93728 1.01305 1.22128 0.87154 0.95479 0.96785 1.47875 1.24459 1.08685 1.56056 1.15737 0.81257 0.82710 0.79196 1.90850 1.41396 1.64807 1.55616 1.44879 1.29704 1.03544 1.60644 1.21032 0.89076 0.91373 0.96559 1.21916 0.99860 0.92687 1.02141 1.21527 0.99706 0.75385 1.03517 1.46446 1.50689 1.10048 1.25291 1.21659 0.77353 0.89806 0.80861 1.90855 1.37245 1.81577 1.27670 1.22722 1.00781 0.93476 0.88205 1.45413 1.58092 1.06094 1.27879 1.16071 0.78994 0.83485 0.81966 1.91029 1.50799 1.73358 1.30946 1.22660 1.00079 0.77708 0.99103 0.92205 0.77911 0.89536 0.89268 0.89214 0.90848 0.75525 0.92139 0.91986 0.90211 0.90141 0.88172 0.87698 0.82559 0.82472 0.69869 0.93832 0.94329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.99 10.69 21.44 0.23 -50.76 16 2 C 0.02 1.29 5.29 84.65 0.45 1.73 16 3 Si 0.96 42.29 29.54 68.60 2.03 44.32 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 5 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.56 -29.17 8.27 25.60 0.21 -28.96 16 8 H 0.07 3.52 7.79 -2.91 -0.02 3.50 16 9 C 0.23 11.34 0.87 -10.15 -0.01 11.33 16 10 O -0.59 -30.55 13.16 -148.98 -1.96 -32.51 16 11 C -0.11 -4.16 6.13 31.79 0.19 -3.97 16 12 C 0.11 3.47 6.15 86.73 0.53 4.01 16 13 N -0.63 -26.67 3.33 -829.74 -2.76 -29.43 16 14 C 0.71 29.64 8.49 179.06 1.52 31.16 16 15 O -0.64 -32.94 16.60 -4.00 -0.07 -33.00 16 16 N -0.73 -21.55 5.52 -478.54 -2.64 -24.19 16 17 C 0.14 3.55 5.67 86.38 0.49 4.04 16 18 C -0.13 -2.19 5.65 30.59 0.17 -2.02 16 19 C 0.12 1.91 5.70 86.38 0.49 2.40 16 20 N -0.58 -8.16 2.60 -773.13 -2.01 -10.17 16 21 C 0.51 5.97 8.31 87.94 0.73 6.71 16 22 O -0.50 -9.57 17.75 -2.88 -0.05 -9.62 16 23 C 0.07 0.06 7.97 85.76 0.68 0.74 16 24 N -0.71 -3.28 6.58 -480.29 -3.16 -6.44 16 25 C 0.69 10.27 8.62 179.44 1.55 11.81 16 26 O -0.58 -13.90 17.48 -3.85 -0.07 -13.97 16 27 C 0.13 6.49 5.38 86.86 0.47 6.96 16 28 H 0.27 14.43 8.31 -92.71 -0.77 13.65 16 29 H 0.37 20.42 7.56 -74.06 -0.56 19.86 16 30 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 31 H 0.09 3.13 8.03 -2.39 -0.02 3.11 16 32 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 33 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.41 9.49 7.46 -92.71 -0.69 8.80 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 36 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.10 1.64 7.86 -2.39 -0.02 1.62 16 40 H 0.10 1.57 8.00 -2.39 -0.02 1.56 16 41 H 0.16 -0.68 8.14 -2.39 -0.02 -0.70 16 42 H 0.16 -0.75 8.14 -2.39 -0.02 -0.77 16 43 H 0.45 -0.03 8.96 -92.71 -0.83 -0.86 16 44 H 0.04 2.54 7.33 -2.38 -0.02 2.53 16 45 H 0.04 2.04 8.03 -2.39 -0.02 2.02 16 Total: -1.00 -81.59 379.71 -4.00 -85.59 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: -1.02 Total: 34.25 kcal Atomic # 6 Polarization: 38.46 SS G_CDS: 7.48 Total: 45.94 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -10.34 Total: -120.99 kcal Atomic # 8 Polarization: -86.96 SS G_CDS: -2.15 Total: -89.11 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -81.59 -4.00 -85.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325966247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.911 kcal (2) G-P(sol) polarization free energy of solvation -81.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds