Wall clock time and date at job start Sat Apr 11 2020 05:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99992 * 2 1 4 4 H 1.48503 * 109.47072 * 239.99697 * 3 2 1 5 5 H 1.48492 * 109.47219 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47177 * 119.99748 * 3 2 1 7 7 C 1.37880 * 119.99587 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99866 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00242 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47136 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47372 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.47090 * 304.99851 * 11 10 9 13 13 N 1.46896 * 109.47144 * 64.99533 * 11 10 9 14 14 C 1.50697 * 109.47217 * 185.00075 * 11 10 9 15 15 O 1.21285 * 119.99931 * 259.99601 * 14 11 10 16 16 N 1.34777 * 120.00239 * 79.99752 * 14 11 10 17 17 C 1.47083 * 120.88534 * 179.97438 * 16 14 11 18 18 C 1.53232 * 108.52278 * 231.16634 * 17 16 14 19 19 N 1.46897 * 109.34003 * 306.16843 * 18 17 16 20 20 C 1.38275 * 111.00012 * 187.25486 * 19 18 17 21 21 N 1.31631 * 127.43979 * 179.97438 * 20 19 18 22 22 C 1.31705 * 116.76714 * 179.97438 * 21 20 19 23 23 N 1.39421 * 121.16947 * 179.97438 * 22 21 20 24 24 N 1.30629 * 117.65620 * 359.97438 * 22 21 20 25 25 S 1.69933 * 105.78937 * 0.02562 * 24 22 21 26 26 C 1.46900 * 111.26980 * 63.10921 * 19 18 17 27 27 C 1.47083 * 120.87981 * 359.97438 * 16 14 11 28 28 H 0.96997 * 119.99559 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47458 * 59.99695 * 9 7 2 30 30 H 1.09003 * 109.47017 * 299.99914 * 9 7 2 31 31 H 1.09002 * 109.47073 * 59.99609 * 10 9 7 32 32 H 1.09003 * 109.47220 * 299.99940 * 10 9 7 33 33 H 1.00908 * 110.99775 * 60.00891 * 13 11 10 34 34 H 1.00904 * 111.00182 * 183.95120 * 13 11 10 35 35 H 1.08997 * 109.62099 * 111.45089 * 17 16 14 36 36 H 1.08997 * 109.62206 * 350.87836 * 17 16 14 37 37 H 1.09002 * 109.49124 * 186.20669 * 18 17 16 38 38 H 1.09001 * 109.51609 * 66.14463 * 18 17 16 39 39 H 0.96998 * 120.00492 * 359.97438 * 23 22 21 40 40 H 0.97004 * 120.00156 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.49276 * 56.85493 * 26 19 18 42 42 H 1.08995 * 109.49154 * 176.93324 * 26 19 18 43 43 H 1.09004 * 109.62515 * 248.54706 * 27 16 14 44 44 H 1.08999 * 109.62955 * 9.11663 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 1 0.7883 -5.0068 0.8433 13 7 0.7280 -5.1189 -1.2537 14 6 2.4548 -6.1298 0.1250 15 8 2.7862 -6.7537 -0.8608 16 7 2.9582 -6.4585 1.3313 17 6 3.9102 -7.5705 1.4746 18 6 3.4080 -8.5015 2.5832 19 7 3.1760 -7.7210 3.8059 20 6 2.8777 -8.5485 4.8728 21 7 2.6153 -8.1925 6.1126 22 6 2.3566 -9.1618 6.9659 23 7 2.0672 -8.8887 8.3022 24 7 2.3807 -10.3880 6.5162 25 16 2.7684 -10.2678 4.8661 26 6 2.1208 -6.7187 3.6061 27 6 2.5700 -5.7148 2.5394 28 1 -0.4849 0.8401 -0.0004 29 1 0.6246 -2.5572 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 2.8719 -3.6044 0.8905 32 1 2.8718 -3.6044 -0.8895 33 1 1.3475 -5.1035 -2.0500 34 1 0.1636 -5.9553 -1.2509 35 1 4.8921 -7.1796 1.7413 36 1 3.9746 -8.1205 0.5357 37 1 4.1555 -9.2704 2.7788 38 1 2.4760 -8.9717 2.2695 39 1 2.0542 -7.9717 8.6181 40 1 1.8787 -9.6158 8.9160 41 1 1.2067 -7.2134 3.2779 42 1 1.9348 -6.1946 4.5435 43 1 3.4230 -5.1454 2.9086 44 1 1.7485 -5.0379 2.3046 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326059521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:25 Heat of formation + Delta-G solvation = 42.950385 kcal Electronic energy + Delta-G solvation = -27251.546699 eV Core-core repulsion = 23366.119093 eV Total energy + Delta-G solvation = -3885.427606 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.02255 -40.30224 -38.74251 -35.44643 -35.40651 -33.74939 -32.86597 -31.82083 -31.40891 -30.16646 -28.48989 -26.42904 -24.60497 -24.47203 -23.43208 -21.73205 -20.67520 -20.28883 -19.51398 -19.09764 -17.95239 -17.03724 -16.47081 -16.39438 -16.15116 -16.04278 -15.88497 -15.63995 -15.36411 -15.15451 -14.78267 -14.46891 -14.19422 -13.58476 -13.25201 -12.96331 -12.48851 -12.39628 -12.25830 -12.13200 -11.89979 -11.86281 -11.79552 -11.57400 -11.36553 -10.90003 -10.72708 -10.64893 -10.60046 -10.18096 -10.03056 -9.84415 -9.43761 -9.41609 -9.05729 -8.89035 -8.43012 -8.40997 -8.25909 -5.96949 -3.99299 0.20451 0.72006 1.35852 2.23817 2.51311 2.60203 2.81714 3.34245 3.39182 3.40740 3.41417 4.13752 4.33083 4.41347 4.47766 4.58318 4.70526 4.76949 4.83794 4.89296 4.96312 5.20927 5.23255 5.33383 5.38942 5.44304 5.51291 5.63004 5.73886 5.83794 5.99816 6.20801 6.35717 6.58419 6.59162 6.79476 7.00010 7.16988 7.39818 7.69292 7.70328 7.71987 7.91040 8.08283 8.10154 8.44389 9.08328 9.64179 11.13837 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014620 B = 0.002486 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.683377 B =11259.247021 C =12540.978328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.051 0.949 9 C 0.032 3.968 10 C -0.097 4.097 11 C 0.077 3.923 12 H 0.099 0.901 13 N -0.806 5.806 14 C 0.488 3.512 15 O -0.549 6.549 16 N -0.618 5.618 17 C 0.117 3.883 18 C 0.030 3.970 19 N -0.428 5.428 20 C 0.297 3.703 21 N -0.566 5.566 22 C 0.538 3.462 23 N -0.818 5.818 24 N -0.552 5.552 25 S 0.193 5.807 26 C 0.048 3.952 27 C 0.107 3.893 28 H 0.260 0.740 29 H 0.035 0.965 30 H 0.013 0.987 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.349 0.651 34 H 0.334 0.666 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.416 0.584 40 H 0.416 0.584 41 H 0.062 0.938 42 H 0.112 0.888 43 H 0.089 0.911 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.706 -20.649 12.011 24.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.135 4.135 11 C -0.038 4.038 12 H 0.116 0.884 13 N -0.334 5.334 14 C 0.276 3.724 15 O -0.426 6.426 16 N -0.353 5.353 17 C -0.007 4.007 18 C -0.098 4.098 19 N -0.148 5.148 20 C -0.082 4.082 21 N -0.300 5.300 22 C 0.161 3.839 23 N -0.374 5.374 24 N -0.396 5.396 25 S 0.323 5.677 26 C -0.079 4.079 27 C -0.016 4.016 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.031 0.969 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.163 0.837 34 H 0.146 0.854 35 H 0.100 0.900 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.087 0.913 39 H 0.247 0.753 40 H 0.248 0.752 41 H 0.080 0.920 42 H 0.130 0.870 43 H 0.107 0.893 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.716 -21.064 11.707 24.555 hybrid contribution 0.508 0.675 0.764 1.139 sum 5.223 -20.388 12.470 24.464 Atomic orbital electron populations 1.69960 1.05948 1.26579 1.50668 1.24983 0.94799 0.99047 0.95423 0.86716 0.79621 0.83423 0.78557 1.20324 1.21347 1.20332 1.21223 0.92853 0.91273 1.50827 0.93028 1.19005 0.93487 0.89779 0.98195 1.21699 0.98926 0.91992 1.00898 1.21907 0.93493 0.93359 0.95067 0.88366 1.59010 1.26879 1.44270 1.03244 1.22849 0.81901 0.85733 0.81870 1.90648 1.61216 1.54258 1.36519 1.48360 1.45534 1.33495 1.07927 1.21616 0.92929 0.88002 0.98110 1.23004 1.03094 0.96149 0.87598 1.57889 1.40829 1.13297 1.02816 1.26622 0.92524 0.96483 0.92621 1.66852 1.28386 1.34232 1.00514 1.19720 0.91815 0.83627 0.88709 1.41492 1.79810 1.12265 1.03861 1.77363 1.39033 1.19951 1.03283 1.84993 1.66933 1.05088 1.10669 1.22854 0.90421 0.92621 1.02046 1.22057 1.03050 0.93385 0.83151 0.93014 0.94680 0.96903 0.92653 0.92727 0.83714 0.85445 0.90048 0.87468 0.87881 0.91284 0.75269 0.75244 0.91980 0.86956 0.89267 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.29 9.11 -34.44 -0.31 -14.61 16 8 H 0.05 1.37 7.74 -52.48 -0.41 0.97 16 9 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 10 C -0.10 -1.82 4.58 -26.73 -0.12 -1.94 16 11 C 0.08 1.18 2.30 -68.87 -0.16 1.03 16 12 H 0.10 1.39 6.52 -51.92 -0.34 1.05 16 13 N -0.81 -12.66 8.44 -5.66 -0.05 -12.71 16 14 C 0.49 6.93 6.95 -10.99 -0.08 6.85 16 15 O -0.55 -9.16 15.70 5.55 0.09 -9.07 16 16 N -0.62 -6.90 3.01 -172.48 -0.52 -7.42 16 17 C 0.12 1.07 6.60 -3.60 -0.02 1.04 16 18 C 0.03 0.22 4.75 -3.71 -0.02 0.21 16 19 N -0.43 -3.86 4.69 -174.28 -0.82 -4.68 16 20 C 0.30 3.02 7.01 -86.40 -0.61 2.42 16 21 N -0.57 -6.36 10.41 -17.39 -0.18 -6.54 16 22 C 0.54 5.82 8.74 -324.68 -2.84 2.98 16 23 N -0.82 -5.85 9.12 27.31 0.25 -5.60 16 24 N -0.55 -6.44 12.22 27.25 0.33 -6.11 16 25 S 0.19 1.87 22.13 -107.50 -2.38 -0.51 16 26 C 0.05 0.42 5.54 -3.71 -0.02 0.40 16 27 C 0.11 1.04 5.72 -3.61 -0.02 1.02 16 28 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.03 0.93 7.75 -51.93 -0.40 0.53 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.97 7.25 -51.93 -0.38 0.60 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.35 5.60 8.58 -39.29 -0.34 5.26 16 34 H 0.33 4.50 9.06 -39.29 -0.36 4.14 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.11 1.04 7.06 -51.93 -0.37 0.68 16 37 H 0.10 0.62 7.51 -51.93 -0.39 0.23 16 38 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 39 H 0.42 2.28 8.96 -40.82 -0.37 1.92 16 40 H 0.42 2.19 8.96 -40.82 -0.37 1.83 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.11 0.99 7.88 -51.93 -0.41 0.58 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.11 1.15 5.33 -51.93 -0.28 0.88 16 LS Contribution 371.25 15.07 5.59 5.59 Total: -1.00 -33.91 371.25 -12.45 -46.37 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -6.06 Total: 8.33 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -4.43 Total: 1.61 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -0.25 Total: -68.60 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.38 Total: -0.51 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.91 -12.45 -46.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326059521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.318 kcal (2) G-P(sol) polarization free energy of solvation -33.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds