Wall clock time and date at job start Sat Apr 11 2020 05:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34233 * 117.00346 * 2 1 4 4 O 1.20828 * 119.99577 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00172 * 179.97438 * 3 2 1 6 6 H 1.09004 * 112.84479 * 48.80723 * 5 3 2 7 7 C 1.53778 * 113.61086 * 179.97438 * 5 3 2 8 8 C 1.53787 * 87.08035 * 140.06661 * 7 5 3 9 9 H 1.09004 * 113.61202 * 89.11582 * 8 7 5 10 10 N 1.46496 * 113.61566 * 220.01945 * 8 7 5 11 11 C 1.34776 * 120.00015 * 205.00016 * 10 8 7 12 12 O 1.21352 * 119.99969 * 359.97438 * 11 10 8 13 13 C 1.49450 * 120.00101 * 180.02562 * 11 10 8 14 14 O 1.21347 * 120.00285 * 359.97438 * 13 11 10 15 15 N 1.34776 * 120.00101 * 180.02562 * 13 11 10 16 16 C 1.47033 * 125.64673 * 359.68495 * 15 13 11 17 17 C 1.54336 * 107.26457 * 178.85109 * 16 15 13 18 18 C 1.55162 * 103.02095 * 338.14077 * 17 16 15 19 19 O 1.42896 * 111.00623 * 277.23208 * 18 17 16 20 20 C 1.50702 * 111.00368 * 153.37871 * 18 17 16 21 21 H 1.08001 * 119.99800 * 6.35209 * 20 18 17 22 22 C 1.37873 * 120.00111 * 186.35258 * 20 18 17 23 23 N 1.31515 * 120.00214 * 0.02562 * 22 20 18 24 24 Si 1.86797 * 120.00162 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46987 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47237 * 119.99714 * 24 22 20 27 27 H 1.48497 * 109.47332 * 239.99715 * 24 22 20 28 28 C 1.47419 * 125.65181 * 179.97438 * 15 13 11 29 29 C 1.53778 * 113.69101 * 277.53681 * 5 3 2 30 30 H 1.09001 * 109.46670 * 299.99840 * 1 2 3 31 31 H 1.08996 * 109.47063 * 59.99778 * 1 2 3 32 32 H 1.08998 * 109.46979 * 179.97438 * 1 2 3 33 33 H 1.08998 * 113.61879 * 25.52144 * 7 5 3 34 34 H 1.08999 * 113.61887 * 254.61251 * 7 5 3 35 35 H 0.96998 * 120.00377 * 24.99850 * 10 8 7 36 36 H 1.08996 * 109.88279 * 298.39933 * 16 15 13 37 37 H 1.09002 * 109.87629 * 59.56601 * 16 15 13 38 38 H 1.08997 * 110.84696 * 219.67687 * 17 16 15 39 39 H 1.08997 * 110.66475 * 96.52492 * 17 16 15 40 40 H 0.96699 * 113.99783 * 173.64891 * 19 18 17 41 41 H 0.96993 * 120.00261 * 180.02562 * 23 22 20 42 42 H 1.09007 * 110.36628 * 322.92842 * 28 15 13 43 43 H 1.08998 * 110.36664 * 85.13863 * 28 15 13 44 44 H 1.08993 * 113.61229 * 105.46294 * 29 5 3 45 45 H 1.09000 * 113.61263 * 334.55944 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0239 0.6361 -0.7550 7 6 4.1078 2.7141 -0.0001 8 6 5.1821 2.2269 0.9865 9 1 6.0814 1.8482 0.5008 10 7 5.4722 3.1832 2.0577 11 6 6.6707 3.1619 2.6737 12 8 7.5095 2.3503 2.3413 13 6 6.9665 4.1372 3.7668 14 8 6.1277 4.9484 4.0996 15 7 8.1653 4.1163 4.3825 16 6 9.2656 3.1878 4.0842 17 6 10.4410 3.5567 5.0139 18 6 10.1354 5.0291 5.3963 19 8 10.5920 5.9269 4.3827 20 6 10.7376 5.3761 6.7334 21 1 11.3792 4.6680 7.2368 22 6 10.4696 6.5975 7.3142 23 7 9.6879 7.4596 6.7015 24 14 11.2167 7.0279 8.9713 25 1 12.0527 5.8963 9.4462 26 1 12.0603 8.2422 8.8336 27 1 10.1315 7.2877 9.9511 28 6 8.5883 5.0166 5.4704 29 6 4.1926 1.1230 1.3969 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.4178 3.4404 0.4294 34 1 4.5100 3.0290 -0.9630 35 1 4.8017 3.8317 2.3237 36 1 8.9476 2.1627 4.2744 37 1 9.5705 3.2965 3.0434 38 1 11.3913 3.4850 4.4849 39 1 10.4451 2.9212 5.8994 40 1 10.3380 6.8483 4.5299 41 1 9.4996 8.3190 7.1099 42 1 8.1926 6.0193 5.3085 43 1 8.2562 4.6296 6.4338 44 1 4.6631 0.1537 1.5613 45 1 3.5257 1.4140 2.2084 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328318721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:34 Heat of formation + Delta-G solvation = -174.265002 kcal Electronic energy + Delta-G solvation = -29626.933504 eV Core-core repulsion = 25224.748359 eV Total energy + Delta-G solvation = -4402.185145 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.29640 -40.36969 -39.12115 -37.97582 -37.18737 -36.68268 -34.44449 -33.40866 -32.26382 -30.23739 -28.85206 -27.93747 -26.73344 -26.20694 -25.59377 -23.84395 -22.27156 -21.20026 -20.39402 -19.73862 -19.26953 -18.26562 -17.36221 -17.25098 -17.12558 -16.76584 -16.39523 -15.79094 -15.56392 -15.31678 -15.13575 -14.53000 -14.33796 -14.29808 -13.75286 -13.61335 -13.10960 -13.07499 -12.95026 -12.88247 -12.70915 -12.41949 -12.30111 -11.90618 -11.68770 -11.63549 -11.51285 -11.21338 -11.15309 -11.09518 -11.07607 -10.80581 -10.70861 -10.58538 -10.47110 -10.21803 -9.39500 -9.28173 -9.16645 -8.72282 -8.41864 -7.92079 -6.31098 -4.40593 1.72533 1.79411 2.24058 2.67317 3.18474 3.27581 3.31047 3.53713 3.85703 3.87777 3.97411 4.24771 4.33487 4.38061 4.58587 4.68725 4.70528 4.77801 4.96639 5.09376 5.13606 5.20515 5.28625 5.44142 5.47810 5.51447 5.76679 5.78650 5.82105 5.96985 6.04630 6.19973 6.32628 6.50423 6.72074 6.77995 6.83241 7.14308 7.21186 7.30387 7.34382 7.71049 7.83445 7.99265 8.02898 8.42336 8.64070 9.26801 9.35286 10.76147 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028898 B = 0.002039 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.676683 B =13731.573015 C =14083.677584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.472 3.528 4 O -0.504 6.504 5 C -0.109 4.109 6 H 0.131 0.869 7 C -0.126 4.126 8 C 0.125 3.875 9 H 0.127 0.873 10 N -0.698 5.698 11 C 0.514 3.486 12 O -0.515 6.515 13 C 0.506 3.494 14 O -0.537 6.537 15 N -0.574 5.574 16 C 0.111 3.889 17 C -0.122 4.122 18 C 0.248 3.752 19 O -0.581 6.581 20 C -0.536 4.536 21 H 0.069 0.931 22 C 0.070 3.930 23 N -0.893 5.893 24 Si 0.904 3.096 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.092 3.908 29 C -0.134 4.134 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.414 0.586 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.381 0.619 41 H 0.270 0.730 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.572 -13.901 -12.985 23.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.315 3.685 4 O -0.391 6.391 5 C -0.128 4.128 6 H 0.149 0.851 7 C -0.164 4.164 8 C 0.020 3.980 9 H 0.144 0.856 10 N -0.351 5.351 11 C 0.295 3.705 12 O -0.390 6.390 13 C 0.288 3.712 14 O -0.416 6.416 15 N -0.306 5.306 16 C -0.011 4.011 17 C -0.160 4.160 18 C 0.207 3.793 19 O -0.389 6.389 20 C -0.574 4.574 21 H 0.087 0.913 22 C -0.133 4.133 23 N -0.532 5.532 24 Si 0.732 3.268 25 H -0.195 1.195 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.029 4.029 29 C -0.173 4.173 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.108 0.892 35 H 0.251 0.749 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.231 0.769 41 H 0.080 0.920 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.508 -14.133 -13.294 23.642 hybrid contribution -0.626 1.115 1.204 1.756 sum -14.134 -13.018 -12.090 22.703 Atomic orbital electron populations 1.23295 0.76241 1.03799 1.02648 1.86523 1.23505 1.33450 1.83930 1.23532 0.91638 0.81332 0.71993 1.90685 1.66965 1.36412 1.45017 1.22323 0.87430 1.01160 1.01912 0.85067 1.23398 0.97258 0.94789 1.01005 1.22481 0.97849 0.89557 0.88115 0.85559 1.45695 1.16235 1.36675 1.36518 1.20489 0.82322 0.84531 0.83142 1.90722 1.45919 1.38256 1.64071 1.19553 0.82757 0.85275 0.83588 1.90733 1.45948 1.39387 1.65563 1.48680 1.12145 1.34379 1.35379 1.22151 0.86829 0.92047 1.00096 1.22712 0.96870 0.97757 0.98625 1.19645 0.87032 0.85588 0.86994 1.86130 1.80283 1.22212 1.50308 1.21501 1.30682 1.01879 1.03355 0.91312 1.25095 0.94042 0.96011 0.98171 1.69716 1.35983 1.08325 1.39179 0.86332 0.79029 0.78529 0.82926 1.19548 1.20746 1.20786 1.23491 0.99024 0.93690 0.86675 1.23484 0.98070 1.01223 0.94510 0.91790 0.91852 0.88004 0.87702 0.89185 0.74910 0.91719 0.91147 0.90515 0.90361 0.76941 0.92010 0.89090 0.91419 0.89061 0.88868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.00 10.57 -39.26 -0.41 -3.41 16 3 C 0.47 4.36 7.49 36.01 0.27 4.63 16 4 O -0.50 -6.04 15.65 -18.75 -0.29 -6.33 16 5 C -0.11 -0.76 4.25 -90.96 -0.39 -1.15 16 6 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 7 C -0.13 -0.97 7.16 -25.92 -0.19 -1.15 16 8 C 0.13 1.15 4.24 -67.10 -0.28 0.86 16 9 H 0.13 1.18 7.47 -51.93 -0.39 0.79 16 10 N -0.70 -8.59 5.35 -53.42 -0.29 -8.87 16 11 C 0.51 8.30 7.86 -11.59 -0.09 8.21 16 12 O -0.52 -8.82 13.73 5.49 0.08 -8.74 16 13 C 0.51 9.98 7.91 -11.59 -0.09 9.89 16 14 O -0.54 -11.62 16.73 5.50 0.09 -11.53 16 15 N -0.57 -11.98 3.33 -171.02 -0.57 -12.55 16 16 C 0.11 2.11 5.49 -3.05 -0.02 2.09 16 17 C -0.12 -2.45 6.13 -24.89 -0.15 -2.60 16 18 C 0.25 5.93 0.87 -89.63 -0.08 5.85 16 19 O -0.58 -14.64 13.16 -35.23 -0.46 -15.10 16 20 C -0.54 -13.71 8.27 -34.44 -0.28 -14.00 16 21 H 0.07 1.73 7.79 -52.49 -0.41 1.32 16 22 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 23 N -0.89 -23.39 10.69 55.43 0.59 -22.79 16 24 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 C 0.09 2.16 5.38 -2.54 -0.01 2.15 16 29 C -0.13 -1.05 7.43 -25.90 -0.19 -1.24 16 30 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 31 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 32 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 0.92 7.41 -51.93 -0.38 0.54 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.41 4.88 8.20 -40.82 -0.33 4.54 16 36 H 0.06 1.12 7.71 -51.93 -0.40 0.72 16 37 H 0.07 1.34 7.57 -51.93 -0.39 0.95 16 38 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 40 H 0.38 9.78 7.57 45.56 0.34 10.12 16 41 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 42 H 0.09 2.38 7.33 -51.93 -0.38 2.00 16 43 H 0.07 1.63 8.03 -51.93 -0.42 1.21 16 44 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 378.87 15.07 5.71 5.71 Total: -1.00 -31.03 378.87 -6.81 -37.84 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -5.69 Total: 14.22 kcal Atomic # 6 Polarization: 17.06 SS G_CDS: -0.54 Total: 16.52 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.26 Total: -44.22 kcal Atomic # 8 Polarization: -44.11 SS G_CDS: -1.00 Total: -45.12 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.03 -6.81 -37.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328318721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.429 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds