Wall clock time and date at job start Sat Apr 11 2020 05:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34233 * 117.00346 * 2 1 4 4 O 1.20828 * 119.99577 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00172 * 179.97438 * 3 2 1 6 6 H 1.09004 * 112.84479 * 48.80723 * 5 3 2 7 7 C 1.53778 * 113.61086 * 179.97438 * 5 3 2 8 8 C 1.53787 * 87.08035 * 140.06661 * 7 5 3 9 9 H 1.09004 * 113.61202 * 89.11582 * 8 7 5 10 10 N 1.46496 * 113.61566 * 220.01945 * 8 7 5 11 11 C 1.34776 * 120.00015 * 205.00016 * 10 8 7 12 12 O 1.21352 * 119.99969 * 359.97438 * 11 10 8 13 13 C 1.49450 * 120.00101 * 180.02562 * 11 10 8 14 14 O 1.21347 * 120.00285 * 359.97438 * 13 11 10 15 15 N 1.34776 * 120.00101 * 180.02562 * 13 11 10 16 16 C 1.47033 * 125.64673 * 359.68495 * 15 13 11 17 17 C 1.54336 * 107.26457 * 178.85109 * 16 15 13 18 18 C 1.55162 * 103.02095 * 338.14077 * 17 16 15 19 19 O 1.42896 * 111.00623 * 277.23208 * 18 17 16 20 20 C 1.50702 * 111.00368 * 153.37871 * 18 17 16 21 21 H 1.08001 * 119.99800 * 6.35209 * 20 18 17 22 22 C 1.37873 * 120.00111 * 186.35258 * 20 18 17 23 23 N 1.31515 * 120.00214 * 0.02562 * 22 20 18 24 24 Si 1.86797 * 120.00162 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46987 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47237 * 119.99714 * 24 22 20 27 27 H 1.48497 * 109.47332 * 239.99715 * 24 22 20 28 28 C 1.47419 * 125.65181 * 179.97438 * 15 13 11 29 29 C 1.53778 * 113.69101 * 277.53681 * 5 3 2 30 30 H 1.09001 * 109.46670 * 299.99840 * 1 2 3 31 31 H 1.08996 * 109.47063 * 59.99778 * 1 2 3 32 32 H 1.08998 * 109.46979 * 179.97438 * 1 2 3 33 33 H 1.08998 * 113.61879 * 25.52144 * 7 5 3 34 34 H 1.08999 * 113.61887 * 254.61251 * 7 5 3 35 35 H 0.96998 * 120.00377 * 24.99850 * 10 8 7 36 36 H 1.08996 * 109.88279 * 298.39933 * 16 15 13 37 37 H 1.09002 * 109.87629 * 59.56601 * 16 15 13 38 38 H 1.08997 * 110.84696 * 219.67687 * 17 16 15 39 39 H 1.08997 * 110.66475 * 96.52492 * 17 16 15 40 40 H 0.96699 * 113.99783 * 173.64891 * 19 18 17 41 41 H 0.96993 * 120.00261 * 180.02562 * 23 22 20 42 42 H 1.09007 * 110.36628 * 322.92842 * 28 15 13 43 43 H 1.08998 * 110.36664 * 85.13863 * 28 15 13 44 44 H 1.08993 * 113.61229 * 105.46294 * 29 5 3 45 45 H 1.09000 * 113.61263 * 334.55944 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0239 0.6361 -0.7550 7 6 4.1078 2.7141 -0.0001 8 6 5.1821 2.2269 0.9865 9 1 6.0814 1.8482 0.5008 10 7 5.4722 3.1832 2.0577 11 6 6.6707 3.1619 2.6737 12 8 7.5095 2.3503 2.3413 13 6 6.9665 4.1372 3.7668 14 8 6.1277 4.9484 4.0996 15 7 8.1653 4.1163 4.3825 16 6 9.2656 3.1878 4.0842 17 6 10.4410 3.5567 5.0139 18 6 10.1354 5.0291 5.3963 19 8 10.5920 5.9269 4.3827 20 6 10.7376 5.3761 6.7334 21 1 11.3792 4.6680 7.2368 22 6 10.4696 6.5975 7.3142 23 7 9.6879 7.4596 6.7015 24 14 11.2167 7.0279 8.9713 25 1 12.0527 5.8963 9.4462 26 1 12.0603 8.2422 8.8336 27 1 10.1315 7.2877 9.9511 28 6 8.5883 5.0166 5.4704 29 6 4.1926 1.1230 1.3969 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.4178 3.4404 0.4294 34 1 4.5100 3.0290 -0.9630 35 1 4.8017 3.8317 2.3237 36 1 8.9476 2.1627 4.2744 37 1 9.5705 3.2965 3.0434 38 1 11.3913 3.4850 4.4849 39 1 10.4451 2.9212 5.8994 40 1 10.3380 6.8483 4.5299 41 1 9.4996 8.3190 7.1099 42 1 8.1926 6.0193 5.3085 43 1 8.2562 4.6296 6.4338 44 1 4.6631 0.1537 1.5613 45 1 3.5257 1.4140 2.2084 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328318721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:33 Heat of formation + Delta-G solvation = -197.485998 kcal Electronic energy + Delta-G solvation = -29627.940442 eV Core-core repulsion = 25224.748359 eV Total energy + Delta-G solvation = -4403.192083 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.11815 -41.61249 -40.28985 -39.17036 -38.78290 -37.42491 -36.18510 -34.53586 -34.24146 -31.94201 -29.73005 -29.43555 -27.94116 -26.93575 -26.82711 -25.28966 -23.62340 -22.13361 -21.58338 -21.29446 -20.38366 -19.15552 -18.98603 -18.62168 -18.14242 -17.68842 -17.42387 -17.22001 -17.07906 -16.51049 -16.33162 -16.12601 -15.69917 -15.50658 -14.88578 -14.71075 -14.65527 -14.38416 -14.30113 -13.95250 -13.63663 -13.53557 -13.49622 -13.31765 -13.00477 -12.86675 -12.74175 -12.54183 -12.47817 -12.36014 -12.26660 -12.19279 -12.09569 -11.83180 -11.80673 -11.41170 -11.21162 -10.75270 -10.56958 -10.33434 -10.26210 -9.63631 -8.25307 -6.41977 0.33302 1.07657 1.25381 1.42541 1.46118 1.56588 1.75646 2.11077 2.37727 2.54423 3.00913 3.23594 3.27804 3.36232 3.64880 3.78093 3.78383 4.04339 4.06766 4.15909 4.29227 4.30949 4.34215 4.48416 4.56491 4.64185 4.67196 4.70269 4.74925 4.84815 4.93595 4.98160 5.00038 5.07240 5.15907 5.31729 5.34484 5.37980 5.44571 5.74831 5.99024 6.07449 6.37991 6.61341 6.67227 6.68431 6.92217 7.26861 7.34926 8.80458 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028898 B = 0.002039 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.676683 B =13731.573015 C =14083.677584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.472 3.528 4 O -0.538 6.538 5 C -0.097 4.097 6 H 0.163 0.837 7 C -0.122 4.122 8 C 0.118 3.882 9 H 0.133 0.867 10 N -0.682 5.682 11 C 0.523 3.477 12 O -0.524 6.524 13 C 0.498 3.502 14 O -0.564 6.564 15 N -0.583 5.583 16 C 0.119 3.881 17 C -0.116 4.116 18 C 0.232 3.768 19 O -0.587 6.587 20 C -0.553 4.553 21 H 0.070 0.930 22 C 0.027 3.973 23 N -0.915 5.915 24 Si 0.965 3.035 25 H -0.264 1.264 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.106 3.894 29 C -0.129 4.129 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.131 0.869 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.416 0.584 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.374 0.626 41 H 0.270 0.730 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.105 0.895 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.603 -16.038 -13.834 25.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.316 3.684 4 O -0.428 6.428 5 C -0.116 4.116 6 H 0.180 0.820 7 C -0.160 4.160 8 C 0.014 3.986 9 H 0.151 0.849 10 N -0.334 5.334 11 C 0.303 3.697 12 O -0.400 6.400 13 C 0.282 3.718 14 O -0.444 6.444 15 N -0.315 5.315 16 C -0.002 4.002 17 C -0.153 4.153 18 C 0.192 3.808 19 O -0.395 6.395 20 C -0.592 4.592 21 H 0.088 0.912 22 C -0.174 4.174 23 N -0.554 5.554 24 Si 0.791 3.209 25 H -0.188 1.188 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.016 4.016 29 C -0.168 4.168 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.149 0.851 33 H 0.110 0.890 34 H 0.125 0.875 35 H 0.253 0.747 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.223 0.777 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.123 0.877 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.561 -16.318 -14.177 25.518 hybrid contribution -0.727 1.770 1.430 2.388 sum -14.288 -14.548 -12.748 24.048 Atomic orbital electron populations 1.23540 0.75048 1.05678 1.02399 1.86518 1.24773 1.32931 1.83486 1.23943 0.92432 0.81057 0.70942 1.90676 1.67873 1.37496 1.46711 1.22391 0.86062 1.01038 1.02147 0.81958 1.23365 0.96310 0.95166 1.01188 1.22808 0.98729 0.89526 0.87538 0.84905 1.45734 1.14665 1.36775 1.36255 1.19735 0.83525 0.83802 0.82639 1.90717 1.46472 1.38425 1.64346 1.20337 0.81918 0.85539 0.84010 1.90709 1.46635 1.40616 1.66445 1.48724 1.13209 1.34425 1.35117 1.22179 0.85744 0.92563 0.99747 1.22725 0.97847 0.95148 0.99625 1.19876 0.87091 0.87350 0.86514 1.86122 1.80460 1.21984 1.50891 1.21794 1.30917 1.02203 1.04246 0.91155 1.25819 0.94384 0.96030 1.01204 1.69826 1.36729 1.08500 1.40345 0.85393 0.78178 0.78230 0.79143 1.18816 1.20714 1.20783 1.23040 0.98952 0.92472 0.87132 1.23439 0.97379 1.01183 0.94783 0.92354 0.91857 0.85116 0.89036 0.87479 0.74653 0.89487 0.91023 0.89598 0.88957 0.77746 0.92081 0.92455 0.92646 0.87678 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.47 16 2 O -0.36 -5.38 10.57 -51.44 -0.54 -5.92 16 3 C 0.47 7.97 7.49 71.24 0.53 8.50 16 4 O -0.54 -12.57 15.65 21.96 0.34 -12.22 16 5 C -0.10 -1.10 4.25 -11.02 -0.05 -1.15 16 6 H 0.16 0.87 8.14 -2.38 -0.02 0.85 16 7 C -0.12 -1.62 7.16 31.12 0.22 -1.40 16 8 C 0.12 1.89 4.24 45.53 0.19 2.09 16 9 H 0.13 2.07 7.47 -2.39 -0.02 2.06 16 10 N -0.68 -15.92 5.35 -441.29 -2.36 -18.28 16 11 C 0.52 16.28 7.86 87.27 0.69 16.97 16 12 O -0.52 -16.88 13.73 -3.25 -0.04 -16.93 16 13 C 0.50 19.69 7.91 87.27 0.69 20.38 16 14 O -0.56 -24.88 16.73 -3.24 -0.05 -24.94 16 15 N -0.58 -24.38 3.33 -813.36 -2.71 -27.08 16 16 C 0.12 4.36 5.49 86.73 0.48 4.84 16 17 C -0.12 -4.52 6.13 31.79 0.19 -4.32 16 18 C 0.23 11.18 0.87 -10.15 -0.01 11.17 16 19 O -0.59 -30.05 13.16 -148.98 -1.96 -32.01 16 20 C -0.55 -28.40 8.27 25.60 0.21 -28.19 16 21 H 0.07 3.50 7.79 -2.91 -0.02 3.48 16 22 C 0.03 1.37 5.29 84.65 0.45 1.82 16 23 N -0.91 -48.96 10.69 21.45 0.23 -48.73 16 24 Si 0.97 41.23 29.54 68.60 2.03 43.25 16 25 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 26 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 27 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 28 C 0.11 5.12 5.38 86.85 0.47 5.59 16 29 C -0.13 -1.71 7.43 31.13 0.23 -1.48 16 30 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 31 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 32 H 0.13 0.55 8.14 -2.39 -0.02 0.54 16 33 H 0.09 1.52 7.41 -2.39 -0.02 1.50 16 34 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.42 9.54 8.20 -92.71 -0.76 8.78 16 36 H 0.09 2.81 7.71 -2.39 -0.02 2.79 16 37 H 0.07 2.61 7.57 -2.39 -0.02 2.59 16 38 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 39 H 0.09 3.31 8.03 -2.39 -0.02 3.29 16 40 H 0.37 19.86 7.57 -74.06 -0.56 19.30 16 41 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 42 H 0.06 3.13 7.33 -2.38 -0.02 3.11 16 43 H 0.06 2.75 8.03 -2.39 -0.02 2.73 16 44 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.08 1.30 8.10 -2.39 -0.02 1.28 16 Total: -1.00 -67.37 378.87 0.15 -67.22 By element: Atomic # 1 Polarization: 39.62 SS G_CDS: -0.28 Total: 39.35 kcal Atomic # 6 Polarization: 30.80 SS G_CDS: 5.50 Total: 36.29 kcal Atomic # 7 Polarization: -89.26 SS G_CDS: -4.84 Total: -94.09 kcal Atomic # 8 Polarization: -89.76 SS G_CDS: -2.26 Total: -92.02 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.25 kcal Total: -67.37 0.15 -67.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328318721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.264 kcal (2) G-P(sol) polarization free energy of solvation -67.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds