Wall clock time and date at job start Sat Apr 11 2020 06:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99841 * 2 1 4 4 H 1.48499 * 109.47151 * 269.99642 * 3 2 1 5 5 H 1.48497 * 109.47275 * 29.99536 * 3 2 1 6 6 H 1.48501 * 109.47082 * 149.99774 * 3 2 1 7 7 C 1.37883 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00090 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99721 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46706 * 179.97438 * 9 7 2 11 11 C 1.34962 * 125.97082 * 125.00181 * 10 9 7 12 12 C 1.35243 * 107.85356 * 179.76577 * 11 10 9 13 13 C 1.40396 * 107.86896 * 0.22585 * 12 11 10 14 14 N 1.40201 * 125.97176 * 179.97438 * 13 12 11 15 15 C 1.34768 * 120.00142 * 359.97438 * 14 13 12 16 16 O 1.21596 * 120.00202 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00292 * 180.02562 * 15 14 13 18 18 C 1.46494 * 120.00332 * 180.02562 * 17 15 14 19 19 H 1.09006 * 109.47218 * 34.99795 * 18 17 15 20 20 C 1.53000 * 109.47124 * 275.00157 * 18 17 15 21 21 O 1.42898 * 109.46725 * 294.99255 * 20 18 17 22 22 C 1.53001 * 109.47415 * 154.99503 * 18 17 15 23 23 C 1.52997 * 109.47454 * 295.00744 * 22 18 17 24 24 O 1.43762 * 109.62836 * 294.35982 * 23 22 18 25 25 C 1.44785 * 104.81617 * 215.80746 * 24 23 22 26 26 C 1.54919 * 101.71846 * 36.10109 * 25 24 23 27 27 O 1.43370 * 109.63248 * 174.99871 * 23 22 18 28 28 N 1.31202 * 108.05652 * 359.97438 * 13 12 11 29 29 H 0.96995 * 120.00331 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46925 * 59.99386 * 9 7 2 31 31 H 1.08997 * 109.46741 * 299.99881 * 9 7 2 32 32 H 1.08002 * 126.07726 * 0.03413 * 11 10 9 33 33 H 1.08003 * 126.06335 * 180.26555 * 12 11 10 34 34 H 0.96998 * 119.99801 * 180.02562 * 14 13 12 35 35 H 0.96998 * 119.99652 * 0.02562 * 17 15 14 36 36 H 1.08996 * 109.47509 * 54.99817 * 20 18 17 37 37 H 1.09004 * 109.47084 * 175.00438 * 20 18 17 38 38 H 0.96703 * 114.00091 * 180.02562 * 21 20 18 39 39 H 1.09008 * 109.46427 * 55.00011 * 22 18 17 40 40 H 1.09000 * 109.47458 * 174.99778 * 22 18 17 41 41 H 1.09001 * 109.63166 * 54.59591 * 23 22 18 42 42 H 1.09001 * 110.97784 * 277.99771 * 25 24 23 43 43 H 1.09001 * 111.01135 * 154.22089 * 25 24 23 44 44 H 1.08997 * 110.69437 * 206.03577 * 26 25 24 45 45 H 1.09001 * 110.83978 * 82.90896 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.2422 -4.6223 0.8952 12 6 3.2576 -5.4453 0.5477 13 6 3.8669 -4.9163 -0.6012 14 7 4.9610 -5.4690 -1.2818 15 6 5.5223 -6.6116 -0.8397 16 8 5.0796 -7.1636 0.1492 17 7 6.5744 -7.1427 -1.4936 18 6 7.1842 -8.3851 -1.0134 19 1 6.4110 -9.0341 -0.6022 20 6 8.2105 -8.0622 0.0744 21 8 9.2842 -7.3087 -0.4925 22 6 7.8800 -9.0947 -2.1767 23 6 6.8359 -9.5283 -3.2076 24 8 5.9752 -10.5262 -2.6329 25 6 5.6786 -11.4316 -3.7230 26 6 7.0210 -11.4436 -4.4962 27 8 7.4927 -10.0887 -4.3521 28 7 3.2336 -3.8143 -0.9266 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6242 -2.5567 0.8903 32 1 1.5776 -4.7526 1.7366 33 1 3.5478 -6.3494 1.0624 34 1 5.3144 -5.0285 -2.0704 35 1 6.9277 -6.7022 -2.2823 36 1 7.7338 -7.4792 0.8623 37 1 8.5997 -8.9901 0.4937 38 1 9.9739 -7.0685 0.1414 39 1 8.5913 -8.4138 -2.6444 40 1 8.4083 -9.9720 -1.8035 41 1 6.2416 -8.6666 -3.5117 42 1 4.8732 -11.0420 -4.3457 43 1 5.4344 -12.4261 -3.3497 44 1 6.8584 -11.6853 -5.5465 45 1 7.7221 -12.1457 -4.0450 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414400802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:03 Heat of formation + Delta-G solvation = -78.258241 kcal Electronic energy + Delta-G solvation = -29427.887503 eV Core-core repulsion = 25062.158274 eV Total energy + Delta-G solvation = -4365.729229 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.91935 -40.57895 -39.62328 -37.56463 -35.41857 -35.20815 -34.56060 -33.34430 -32.11243 -30.79717 -29.71679 -29.20249 -27.44350 -26.55320 -23.84121 -23.46354 -22.91459 -22.08418 -20.86814 -20.35244 -19.75817 -18.26007 -17.69232 -17.43622 -17.24308 -16.61924 -16.52841 -16.23312 -15.83875 -15.60034 -15.11811 -14.80168 -14.61552 -14.37403 -14.06796 -14.02064 -13.82756 -13.60300 -13.35729 -13.04382 -12.80301 -12.51614 -12.35309 -12.20959 -12.13087 -11.75662 -11.62729 -11.49807 -11.01410 -10.87284 -10.65562 -10.39083 -10.31430 -10.22718 -10.04787 -10.00334 -9.63727 -9.45462 -9.16637 -8.60754 -8.05277 -7.36563 -6.21692 -4.26510 2.42117 2.71318 3.00300 3.15826 3.25574 3.31206 3.36495 3.52558 3.66295 3.87548 4.05302 4.13015 4.29554 4.39171 4.42799 4.50657 4.53660 4.71989 4.80076 5.03559 5.08906 5.10919 5.13311 5.14329 5.28346 5.41257 5.53593 5.54468 5.64867 5.81015 5.86922 6.26908 6.36283 6.58807 6.63639 6.64640 6.91543 7.05480 7.15648 7.34968 7.55030 7.72746 7.86554 8.02944 8.11092 8.64985 8.71067 8.84375 9.38908 10.86962 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017263 B = 0.002144 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.618831 B =13055.476677 C =13542.844200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.069 0.931 9 C 0.259 3.741 10 N -0.321 5.321 11 C 0.050 3.950 12 C -0.286 4.286 13 C 0.276 3.724 14 N -0.643 5.643 15 C 0.715 3.285 16 O -0.569 6.569 17 N -0.735 5.735 18 C 0.175 3.825 19 H 0.111 0.889 20 C 0.062 3.938 21 O -0.570 6.570 22 C -0.133 4.133 23 C 0.230 3.770 24 O -0.372 6.372 25 C 0.015 3.985 26 C 0.021 3.979 27 O -0.385 6.385 28 N -0.308 5.308 29 H 0.267 0.733 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.167 0.833 33 H 0.161 0.839 34 H 0.406 0.594 35 H 0.398 0.602 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.379 0.621 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.110 0.890 44 H 0.100 0.900 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.408 -23.618 -5.686 29.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.103 5.103 11 C -0.100 4.100 12 C -0.317 4.317 13 C 0.022 3.978 14 N -0.293 5.293 15 C 0.414 3.586 16 O -0.444 6.444 17 N -0.391 5.391 18 C 0.070 3.930 19 H 0.129 0.871 20 C -0.018 4.018 21 O -0.376 6.376 22 C -0.171 4.171 23 C 0.135 3.865 24 O -0.293 6.293 25 C -0.061 4.061 26 C -0.056 4.056 27 O -0.306 6.306 28 N -0.139 5.139 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.184 0.816 33 H 0.178 0.822 34 H 0.241 0.759 35 H 0.232 0.768 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.226 0.774 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.128 0.872 44 H 0.118 0.882 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 15.388 -22.920 -6.031 28.257 hybrid contribution 0.977 0.739 0.241 1.249 sum 16.365 -22.180 -5.790 28.166 Atomic orbital electron populations 1.69916 1.06028 1.27578 1.49897 1.24950 0.94986 0.99539 0.94671 0.86326 0.79657 0.82157 0.78343 1.20358 1.21013 1.19740 1.21266 0.93999 0.89406 1.51861 0.91316 1.19722 0.85622 0.81325 0.99208 1.49044 1.23205 1.19797 1.18267 1.22549 1.00377 0.90292 0.96774 1.21507 1.02133 1.06313 1.01768 1.18784 0.90710 0.93948 0.94317 1.41385 1.31675 1.24773 1.31488 1.15620 0.79857 0.80152 0.82953 1.90860 1.64628 1.62264 1.26668 1.45046 1.33562 1.27508 1.33028 1.20821 0.94127 0.84766 0.93330 0.87095 1.22689 0.88046 0.95206 0.95819 1.86435 1.34984 1.75764 1.40379 1.22189 0.97761 1.01691 0.95447 1.24157 0.87723 0.90957 0.83621 1.89287 1.67056 1.39918 1.33021 1.24399 0.97256 0.95679 0.88769 1.24197 0.94812 0.84442 1.02136 1.88903 1.67659 1.26360 1.47666 1.77321 1.03841 1.16260 1.16500 0.92362 0.93792 0.92563 0.81582 0.82194 0.75898 0.76773 0.92343 0.92776 0.77444 0.88307 0.89282 0.89564 0.90470 0.87229 0.88221 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.55 13.29 55.43 0.74 -24.82 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -14.83 9.23 -34.44 -0.32 -15.15 16 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 9 C 0.26 6.67 6.26 -5.19 -0.03 6.64 16 10 N -0.32 -7.62 3.67 -62.56 -0.23 -7.85 16 11 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 12 C -0.29 -5.84 9.61 -39.84 -0.38 -6.22 16 13 C 0.28 5.71 8.11 -154.36 -1.25 4.46 16 14 N -0.64 -10.36 5.45 -15.51 -0.08 -10.45 16 15 C 0.71 10.79 8.50 -86.92 -0.74 10.05 16 16 O -0.57 -10.30 13.13 5.28 0.07 -10.23 16 17 N -0.74 -7.97 4.40 -58.68 -0.26 -8.23 16 18 C 0.18 1.71 2.32 -67.93 -0.16 1.55 16 19 H 0.11 1.29 7.16 -51.93 -0.37 0.91 16 20 C 0.06 0.55 6.85 37.16 0.25 0.80 16 21 O -0.57 -4.74 12.83 -35.23 -0.45 -5.20 16 22 C -0.13 -1.09 4.56 -26.73 -0.12 -1.21 16 23 C 0.23 2.10 3.96 37.16 0.15 2.24 16 24 O -0.37 -3.66 10.84 -59.04 -0.64 -4.30 16 25 C 0.02 0.10 7.95 38.17 0.30 0.40 16 26 C 0.02 0.12 8.07 38.17 0.31 0.43 16 27 O -0.38 -3.50 11.22 -59.04 -0.66 -4.16 16 28 N -0.31 -7.24 12.42 31.44 0.39 -6.85 16 29 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 32 H 0.17 2.78 8.06 -52.49 -0.42 2.36 16 33 H 0.16 3.20 5.91 -52.48 -0.31 2.89 16 34 H 0.41 5.40 8.84 -40.82 -0.36 5.04 16 35 H 0.40 3.49 8.62 -40.82 -0.35 3.14 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.38 1.76 9.12 45.56 0.42 2.17 16 39 H 0.10 0.81 7.73 -51.92 -0.40 0.41 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.82 7.62 -51.93 -0.40 0.42 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 382.80 15.07 5.77 5.77 Total: -1.00 -35.53 382.80 -8.21 -43.74 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -5.54 Total: 9.58 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -2.28 Total: 6.43 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 0.55 Total: -58.19 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -1.68 Total: -23.89 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.53 -8.21 -43.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414400802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.519 kcal (2) G-P(sol) polarization free energy of solvation -35.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds