Wall clock time and date at job start Sat Apr 11 2020 06:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99841 * 2 1 4 4 H 1.48499 * 109.47151 * 269.99642 * 3 2 1 5 5 H 1.48497 * 109.47275 * 29.99536 * 3 2 1 6 6 H 1.48501 * 109.47082 * 149.99774 * 3 2 1 7 7 C 1.37883 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00090 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99721 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46706 * 179.97438 * 9 7 2 11 11 C 1.34962 * 125.97082 * 125.00181 * 10 9 7 12 12 C 1.35243 * 107.85356 * 179.76577 * 11 10 9 13 13 C 1.40396 * 107.86896 * 0.22585 * 12 11 10 14 14 N 1.40201 * 125.97176 * 179.97438 * 13 12 11 15 15 C 1.34768 * 120.00142 * 359.97438 * 14 13 12 16 16 O 1.21596 * 120.00202 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00292 * 180.02562 * 15 14 13 18 18 C 1.46494 * 120.00332 * 180.02562 * 17 15 14 19 19 H 1.09006 * 109.47218 * 34.99795 * 18 17 15 20 20 C 1.53000 * 109.47124 * 275.00157 * 18 17 15 21 21 O 1.42898 * 109.46725 * 294.99255 * 20 18 17 22 22 C 1.53001 * 109.47415 * 154.99503 * 18 17 15 23 23 C 1.52997 * 109.47454 * 295.00744 * 22 18 17 24 24 O 1.43762 * 109.62836 * 294.35982 * 23 22 18 25 25 C 1.44785 * 104.81617 * 215.80746 * 24 23 22 26 26 C 1.54919 * 101.71846 * 36.10109 * 25 24 23 27 27 O 1.43370 * 109.63248 * 174.99871 * 23 22 18 28 28 N 1.31202 * 108.05652 * 359.97438 * 13 12 11 29 29 H 0.96995 * 120.00331 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46925 * 59.99386 * 9 7 2 31 31 H 1.08997 * 109.46741 * 299.99881 * 9 7 2 32 32 H 1.08002 * 126.07726 * 0.03413 * 11 10 9 33 33 H 1.08003 * 126.06335 * 180.26555 * 12 11 10 34 34 H 0.96998 * 119.99801 * 180.02562 * 14 13 12 35 35 H 0.96998 * 119.99652 * 0.02562 * 17 15 14 36 36 H 1.08996 * 109.47509 * 54.99817 * 20 18 17 37 37 H 1.09004 * 109.47084 * 175.00438 * 20 18 17 38 38 H 0.96703 * 114.00091 * 180.02562 * 21 20 18 39 39 H 1.09008 * 109.46427 * 55.00011 * 22 18 17 40 40 H 1.09000 * 109.47458 * 174.99778 * 22 18 17 41 41 H 1.09001 * 109.63166 * 54.59591 * 23 22 18 42 42 H 1.09001 * 110.97784 * 277.99771 * 25 24 23 43 43 H 1.09001 * 111.01135 * 154.22089 * 25 24 23 44 44 H 1.08997 * 110.69437 * 206.03577 * 26 25 24 45 45 H 1.09001 * 110.83978 * 82.90896 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.2422 -4.6223 0.8952 12 6 3.2576 -5.4453 0.5477 13 6 3.8669 -4.9163 -0.6012 14 7 4.9610 -5.4690 -1.2818 15 6 5.5223 -6.6116 -0.8397 16 8 5.0796 -7.1636 0.1492 17 7 6.5744 -7.1427 -1.4936 18 6 7.1842 -8.3851 -1.0134 19 1 6.4110 -9.0341 -0.6022 20 6 8.2105 -8.0622 0.0744 21 8 9.2842 -7.3087 -0.4925 22 6 7.8800 -9.0947 -2.1767 23 6 6.8359 -9.5283 -3.2076 24 8 5.9752 -10.5262 -2.6329 25 6 5.6786 -11.4316 -3.7230 26 6 7.0210 -11.4436 -4.4962 27 8 7.4927 -10.0887 -4.3521 28 7 3.2336 -3.8143 -0.9266 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6242 -2.5567 0.8903 32 1 1.5776 -4.7526 1.7366 33 1 3.5478 -6.3494 1.0624 34 1 5.3144 -5.0285 -2.0704 35 1 6.9277 -6.7022 -2.2823 36 1 7.7338 -7.4792 0.8623 37 1 8.5997 -8.9901 0.4937 38 1 9.9739 -7.0685 0.1414 39 1 8.5913 -8.4138 -2.6444 40 1 8.4083 -9.9720 -1.8035 41 1 6.2416 -8.6666 -3.5117 42 1 4.8732 -11.0420 -4.3457 43 1 5.4344 -12.4261 -3.3497 44 1 6.8584 -11.6853 -5.5465 45 1 7.7221 -12.1457 -4.0450 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414400802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:03 Heat of formation + Delta-G solvation = -106.732714 kcal Electronic energy + Delta-G solvation = -29429.122248 eV Core-core repulsion = 25062.158274 eV Total energy + Delta-G solvation = -4366.963974 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.23625 -41.48491 -40.85838 -38.40703 -36.29884 -36.03289 -35.86159 -35.26072 -33.24300 -32.28671 -30.94107 -30.41318 -28.50570 -28.07132 -25.17285 -24.36891 -23.88089 -23.25856 -22.13142 -21.58497 -21.24650 -19.39354 -18.69234 -18.41232 -18.25645 -18.09087 -17.79258 -17.10550 -16.87094 -16.74561 -16.46364 -16.04703 -15.79219 -15.58480 -15.44944 -14.99489 -14.76022 -14.46392 -14.36628 -14.21108 -13.98907 -13.78871 -13.66544 -13.65843 -13.21305 -12.96179 -12.86609 -12.73271 -12.28655 -12.24260 -12.21238 -12.03737 -11.63386 -11.38183 -11.19996 -11.14038 -10.92708 -10.72554 -10.70661 -10.14967 -9.71233 -9.04264 -8.32156 -6.46256 1.08584 1.13856 1.38281 1.39209 1.50703 1.71677 2.11491 2.36410 2.41908 2.45228 2.91342 2.99167 3.14893 3.40029 3.63918 3.80635 3.84638 3.98752 4.02782 4.13662 4.19981 4.29013 4.39630 4.42861 4.54745 4.60608 4.73072 4.76550 4.77644 4.86437 4.91215 4.96178 4.98491 5.03772 5.11745 5.17355 5.49846 5.57608 5.76851 5.88783 5.98670 6.04412 6.30721 6.64507 6.76136 6.88256 7.15532 7.23512 7.43352 8.75270 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017263 B = 0.002144 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.618831 B =13055.476677 C =13542.844200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.018 3.982 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.273 3.727 10 N -0.346 5.346 11 C 0.056 3.944 12 C -0.292 4.292 13 C 0.285 3.715 14 N -0.637 5.637 15 C 0.714 3.286 16 O -0.598 6.598 17 N -0.715 5.715 18 C 0.174 3.826 19 H 0.094 0.906 20 C 0.068 3.932 21 O -0.579 6.579 22 C -0.119 4.119 23 C 0.229 3.771 24 O -0.396 6.396 25 C 0.009 3.991 26 C 0.017 3.983 27 O -0.401 6.401 28 N -0.348 5.348 29 H 0.273 0.727 30 H 0.021 0.979 31 H 0.059 0.941 32 H 0.201 0.799 33 H 0.167 0.833 34 H 0.419 0.581 35 H 0.411 0.589 36 H 0.035 0.965 37 H 0.078 0.922 38 H 0.396 0.604 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.131 0.869 44 H 0.119 0.881 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.074 -24.438 -5.892 30.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.585 4.585 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.128 5.128 11 C -0.093 4.093 12 C -0.323 4.323 13 C 0.029 3.971 14 N -0.289 5.289 15 C 0.414 3.586 16 O -0.476 6.476 17 N -0.371 5.371 18 C 0.069 3.931 19 H 0.111 0.889 20 C -0.011 4.011 21 O -0.387 6.387 22 C -0.157 4.157 23 C 0.134 3.866 24 O -0.317 6.317 25 C -0.067 4.067 26 C -0.058 4.058 27 O -0.323 6.323 28 N -0.179 5.179 29 H 0.082 0.918 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.218 0.782 33 H 0.184 0.816 34 H 0.256 0.744 35 H 0.247 0.753 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.245 0.755 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.148 0.852 44 H 0.137 0.863 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 17.109 -23.772 -6.269 29.952 hybrid contribution 0.527 0.823 0.268 1.013 sum 17.636 -22.949 -6.001 29.558 Atomic orbital electron populations 1.69991 1.07186 1.28751 1.49998 1.25747 0.95865 1.02728 0.93938 0.85342 0.78347 0.78142 0.78545 1.19798 1.19645 1.19786 1.21398 0.93350 0.90991 1.52722 0.93017 1.19329 0.85667 0.81510 0.98083 1.48818 1.23825 1.20407 1.19706 1.23156 1.00494 0.88879 0.96726 1.21678 1.02223 1.06507 1.01880 1.19081 0.90879 0.92932 0.94167 1.41397 1.30680 1.25121 1.31701 1.15750 0.80389 0.79655 0.82815 1.90830 1.65701 1.62951 1.28112 1.44954 1.31999 1.27472 1.32704 1.20916 0.94010 0.83837 0.94375 0.88850 1.22540 0.88003 0.95957 0.94596 1.86389 1.35253 1.75769 1.41263 1.22073 0.97312 1.01824 0.94483 1.24113 0.87802 0.90778 0.83897 1.89266 1.67323 1.40599 1.34463 1.24632 0.97642 0.96138 0.88282 1.24422 0.94644 0.83303 1.03460 1.88878 1.67892 1.27945 1.47560 1.77242 1.04955 1.18036 1.17705 0.91842 0.96108 0.92329 0.78211 0.81562 0.74385 0.75302 0.94629 0.90419 0.75466 0.87966 0.88181 0.90536 0.90396 0.85161 0.86274 0.89342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.64 13.29 21.45 0.28 -52.35 16 2 C 0.02 0.98 5.46 84.66 0.46 1.44 16 3 Si 0.97 44.10 29.54 68.60 2.03 46.13 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.55 -31.28 9.23 25.60 0.24 -31.04 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.27 14.41 6.26 85.63 0.54 14.94 16 10 N -0.35 -16.64 3.67 -351.84 -1.29 -17.93 16 11 C 0.06 2.27 11.44 83.52 0.96 3.23 16 12 C -0.29 -11.84 9.61 22.10 0.21 -11.62 16 13 C 0.29 11.80 8.11 133.31 1.08 12.88 16 14 N -0.64 -20.33 5.45 -321.24 -1.75 -22.08 16 15 C 0.71 21.25 8.50 179.06 1.52 22.77 16 16 O -0.60 -21.56 13.13 -4.02 -0.05 -21.61 16 17 N -0.71 -14.88 4.40 -457.81 -2.01 -16.89 16 18 C 0.17 3.21 2.32 44.99 0.10 3.31 16 19 H 0.09 2.13 7.16 -2.38 -0.02 2.11 16 20 C 0.07 1.11 6.85 71.98 0.49 1.61 16 21 O -0.58 -8.44 12.83 -148.98 -1.91 -10.35 16 22 C -0.12 -1.76 4.56 30.59 0.14 -1.62 16 23 C 0.23 3.94 3.96 71.98 0.28 4.22 16 24 O -0.40 -7.43 10.84 -126.22 -1.37 -8.80 16 25 C 0.01 0.10 7.95 72.64 0.58 0.68 16 26 C 0.02 0.17 8.07 72.64 0.59 0.76 16 27 O -0.40 -6.73 11.22 -126.22 -1.42 -8.14 16 28 N -0.35 -16.64 12.42 -54.44 -0.68 -17.31 16 29 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 30 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 3.01 8.07 -2.39 -0.02 3.00 16 32 H 0.20 6.43 8.06 -2.91 -0.02 6.41 16 33 H 0.17 6.58 5.91 -2.91 -0.02 6.57 16 34 H 0.42 10.93 8.84 -92.71 -0.82 10.11 16 35 H 0.41 6.67 8.62 -92.71 -0.80 5.87 16 36 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.40 2.81 9.12 -74.06 -0.68 2.14 16 39 H 0.10 1.48 7.73 -2.38 -0.02 1.46 16 40 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.08 1.41 7.62 -2.39 -0.02 1.40 16 42 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 43 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -76.56 382.80 -2.21 -78.77 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: -1.24 Total: 29.01 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: 7.19 Total: 21.55 kcal Atomic # 7 Polarization: -121.12 SS G_CDS: -5.45 Total: -126.56 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -4.75 Total: -48.90 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -76.56 -2.21 -78.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414400802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.963 kcal (2) G-P(sol) polarization free energy of solvation -76.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds