Wall clock time and date at job start Sat Apr 11 2020 06:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99495 * 2 1 4 4 H 1.48495 * 109.47116 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47293 * 300.00024 * 3 2 1 6 6 H 1.48499 * 109.47608 * 60.00257 * 3 2 1 7 7 C 1.37873 * 120.00345 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99923 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00051 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46751 * 179.97438 * 9 7 2 11 11 C 1.34962 * 125.97057 * 125.00134 * 10 9 7 12 12 C 1.35243 * 107.85356 * 179.71745 * 11 10 9 13 13 C 1.40397 * 107.86884 * 0.24300 * 12 11 10 14 14 N 1.40201 * 125.97169 * 179.97438 * 13 12 11 15 15 C 1.34768 * 120.00133 * 359.97438 * 14 13 12 16 16 O 1.21596 * 120.00215 * 359.97438 * 15 14 13 17 17 N 1.34780 * 120.00282 * 180.02562 * 15 14 13 18 18 C 1.46494 * 120.00323 * 179.97438 * 17 15 14 19 19 H 1.09011 * 109.47148 * 324.99529 * 18 17 15 20 20 C 1.52995 * 109.47534 * 84.99875 * 18 17 15 21 21 O 1.42900 * 109.47094 * 64.99990 * 20 18 17 22 22 C 1.52999 * 109.47196 * 205.00229 * 18 17 15 23 23 C 1.52994 * 109.47641 * 64.99467 * 22 18 17 24 24 O 1.43755 * 109.63429 * 293.91308 * 23 22 18 25 25 C 1.44579 * 104.91683 * 215.70846 * 24 23 22 26 26 C 1.54910 * 101.64108 * 36.26761 * 25 24 23 27 27 O 1.43366 * 109.63343 * 174.69227 * 23 22 18 28 28 N 1.31203 * 108.05668 * 359.97438 * 13 12 11 29 29 H 0.96998 * 120.00621 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.46855 * 59.99877 * 9 7 2 31 31 H 1.09001 * 109.46564 * 299.99623 * 9 7 2 32 32 H 1.08002 * 126.07726 * 359.97438 * 11 10 9 33 33 H 1.08003 * 126.06335 * 180.26555 * 12 11 10 34 34 H 0.96998 * 119.99799 * 179.97438 * 14 13 12 35 35 H 0.96998 * 119.99650 * 359.97438 * 17 15 14 36 36 H 1.08995 * 109.47459 * 185.00420 * 20 18 17 37 37 H 1.09007 * 109.46873 * 304.99918 * 20 18 17 38 38 H 0.96703 * 113.99845 * 180.02562 * 21 20 18 39 39 H 1.09004 * 109.47180 * 185.00106 * 22 18 17 40 40 H 1.09010 * 109.46968 * 304.99259 * 22 18 17 41 41 H 1.09004 * 109.62659 * 54.29898 * 23 22 18 42 42 H 1.08996 * 111.08980 * 278.15027 * 25 24 23 43 43 H 1.09005 * 110.97736 * 154.32947 * 25 24 23 44 44 H 1.09008 * 110.69503 * 205.96183 * 26 25 24 45 45 H 1.09001 * 110.84976 * 82.82114 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4992 0.0005 10 7 2.2033 -3.6126 0.0005 11 6 2.2424 -4.6223 0.8953 12 6 3.2572 -5.4457 0.5471 13 6 3.8662 -4.9169 -0.6020 14 7 4.9597 -5.4701 -1.2832 15 6 5.5205 -6.6132 -0.8415 16 8 5.0786 -7.1645 0.1480 17 7 6.5720 -7.1447 -1.4961 18 6 7.1820 -8.3870 -1.0157 19 1 7.1458 -8.4121 0.0735 20 6 6.4135 -9.5838 -1.5793 21 8 6.5584 -9.6165 -3.0006 22 6 8.6387 -8.4522 -1.4790 23 6 9.4357 -7.3271 -0.8160 24 8 8.9662 -6.0556 -1.2948 25 6 10.1481 -5.2262 -1.3689 26 6 11.2189 -6.2482 -1.8258 27 8 10.8238 -7.4590 -1.1495 28 7 3.2334 -3.8145 -0.9269 29 1 -0.4851 0.8400 -0.0004 30 1 0.6249 -2.5571 -0.8897 31 1 0.6242 -2.5567 0.8904 32 1 1.5784 -4.7521 1.7371 33 1 3.5472 -6.3500 1.0616 34 1 5.3125 -5.0301 -2.0723 35 1 6.9248 -6.7047 -2.2852 36 1 6.8108 -10.5046 -1.1523 37 1 5.3579 -9.4908 -1.3237 38 1 6.0956 -10.3512 -3.4263 39 1 9.0664 -9.4148 -1.1984 40 1 8.6809 -8.3379 -2.5623 41 1 9.3124 -7.3793 0.2657 42 1 10.3972 -4.8101 -0.3928 43 1 10.0237 -4.4347 -2.1080 44 1 12.2124 -5.9346 -1.5052 45 1 11.1894 -6.3838 -2.9069 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414400804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:07 Heat of formation + Delta-G solvation = -77.046349 kcal Electronic energy + Delta-G solvation = -29777.095136 eV Core-core repulsion = 25411.418459 eV Total energy + Delta-G solvation = -4365.676677 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.87968 -40.52594 -39.54341 -37.53876 -35.40839 -35.10817 -34.47727 -33.32214 -32.07542 -30.76272 -29.69848 -29.17034 -27.35836 -26.52525 -23.85438 -23.36011 -22.88134 -22.01254 -20.90743 -20.28103 -19.67845 -18.13005 -17.76329 -17.41357 -17.02593 -16.68336 -16.52516 -16.27938 -15.69089 -15.40973 -15.10861 -14.89011 -14.58414 -14.25096 -14.10639 -14.05404 -13.71940 -13.41230 -13.31789 -13.03973 -12.77627 -12.45993 -12.31473 -12.16747 -12.07853 -11.89020 -11.68356 -11.38105 -11.01739 -10.85076 -10.59539 -10.37383 -10.25456 -10.22680 -10.00235 -9.94196 -9.57910 -9.42214 -9.05429 -8.60487 -8.01335 -7.32337 -6.21097 -4.25770 2.51673 2.76280 3.03901 3.21837 3.24061 3.31449 3.38264 3.57759 3.72214 3.92526 4.06110 4.17792 4.32322 4.42356 4.48255 4.51112 4.60011 4.75571 4.85549 5.09144 5.10099 5.13869 5.14023 5.20565 5.31482 5.43064 5.49490 5.54071 5.61732 5.85993 5.90931 6.35382 6.45991 6.62122 6.66650 6.73158 6.94739 7.08972 7.23050 7.34944 7.60140 7.74119 7.89480 8.10702 8.14295 8.74329 8.75121 8.86401 9.39679 10.87610 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013487 B = 0.002526 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.535055 B =11082.258535 C =12666.655712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.069 0.931 9 C 0.259 3.741 10 N -0.322 5.322 11 C 0.049 3.951 12 C -0.286 4.286 13 C 0.278 3.722 14 N -0.643 5.643 15 C 0.717 3.283 16 O -0.578 6.578 17 N -0.722 5.722 18 C 0.176 3.824 19 H 0.103 0.897 20 C 0.062 3.938 21 O -0.569 6.569 22 C -0.135 4.135 23 C 0.232 3.768 24 O -0.367 6.367 25 C 0.015 3.985 26 C 0.021 3.979 27 O -0.387 6.387 28 N -0.309 5.309 29 H 0.266 0.734 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.166 0.834 33 H 0.160 0.840 34 H 0.406 0.594 35 H 0.402 0.598 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.378 0.622 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.110 0.890 44 H 0.098 0.902 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.962 -18.491 -4.271 27.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.104 5.104 11 C -0.101 4.101 12 C -0.318 4.318 13 C 0.024 3.976 14 N -0.292 5.292 15 C 0.416 3.584 16 O -0.454 6.454 17 N -0.378 5.378 18 C 0.070 3.930 19 H 0.121 0.879 20 C -0.017 4.017 21 O -0.375 6.375 22 C -0.173 4.173 23 C 0.137 3.863 24 O -0.287 6.287 25 C -0.061 4.061 26 C -0.055 4.055 27 O -0.308 6.308 28 N -0.140 5.140 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.184 0.816 33 H 0.178 0.822 34 H 0.241 0.759 35 H 0.238 0.762 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.225 0.775 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.128 0.872 44 H 0.116 0.884 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 19.515 -17.401 -4.064 26.460 hybrid contribution 0.455 0.402 -0.264 0.662 sum 19.971 -16.998 -4.328 26.580 Atomic orbital electron populations 1.69928 1.06033 1.27454 1.50054 1.24948 0.94976 0.99538 0.94702 0.86281 0.80069 0.82524 0.77672 1.19581 1.20731 1.20797 1.21316 0.94051 0.89410 1.51639 0.91252 1.19717 0.85641 0.81366 0.99175 1.49031 1.23272 1.19801 1.18308 1.22542 1.00418 0.90341 0.96779 1.21505 1.02147 1.06309 1.01790 1.18801 0.90687 0.93848 0.94245 1.41365 1.31611 1.24830 1.31391 1.15610 0.80062 0.79982 0.82730 1.90838 1.64672 1.62889 1.27040 1.44879 1.33416 1.26620 1.32845 1.20734 0.90375 0.82434 0.99507 0.87933 1.22687 1.00305 0.97344 0.81405 1.86454 1.76978 1.54356 1.19672 1.22228 0.93384 0.98574 1.03111 1.24148 0.79622 0.84815 0.97712 1.89248 1.29777 1.22296 1.87412 1.24363 0.83999 0.95062 1.02700 1.24196 0.99511 0.83662 0.98145 1.88884 1.25257 1.39052 1.77600 1.77322 1.03891 1.16316 1.16507 0.92430 0.93812 0.92597 0.81646 0.82223 0.75921 0.76233 0.92822 0.92370 0.77538 0.88374 0.89168 0.89750 0.90583 0.87171 0.88361 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.63 13.29 55.43 0.74 -24.89 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.53 -14.85 9.23 -34.44 -0.32 -15.17 16 8 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 9 C 0.26 6.70 6.26 -5.19 -0.03 6.67 16 10 N -0.32 -7.70 3.67 -62.56 -0.23 -7.93 16 11 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 12 C -0.29 -5.90 9.61 -39.84 -0.38 -6.28 16 13 C 0.28 5.84 8.11 -154.36 -1.25 4.59 16 14 N -0.64 -10.71 5.45 -15.51 -0.08 -10.79 16 15 C 0.72 11.11 8.50 -86.92 -0.74 10.37 16 16 O -0.58 -10.51 13.13 5.28 0.07 -10.44 16 17 N -0.72 -8.23 3.86 -58.68 -0.23 -8.45 16 18 C 0.18 1.67 2.37 -67.94 -0.16 1.51 16 19 H 0.10 1.06 7.58 -51.92 -0.39 0.67 16 20 C 0.06 0.53 6.85 37.15 0.25 0.78 16 21 O -0.57 -4.66 12.83 -35.23 -0.45 -5.11 16 22 C -0.13 -1.07 4.65 -26.73 -0.12 -1.19 16 23 C 0.23 2.06 4.01 37.15 0.15 2.21 16 24 O -0.37 -3.53 9.19 -59.05 -0.54 -4.08 16 25 C 0.02 0.11 7.95 38.17 0.30 0.41 16 26 C 0.02 0.13 8.07 38.17 0.31 0.44 16 27 O -0.39 -3.49 11.22 -59.05 -0.66 -4.15 16 28 N -0.31 -7.35 12.42 31.44 0.39 -6.96 16 29 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 32 H 0.17 2.80 8.06 -52.49 -0.42 2.37 16 33 H 0.16 3.22 5.91 -52.48 -0.31 2.91 16 34 H 0.41 5.76 8.84 -40.82 -0.36 5.40 16 35 H 0.40 4.16 7.72 -40.82 -0.31 3.85 16 36 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 38 H 0.38 1.66 9.12 45.56 0.42 2.07 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.78 7.73 -51.92 -0.40 0.38 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.10 0.44 8.14 -51.92 -0.42 0.02 16 45 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 380.83 15.07 5.74 5.74 Total: -1.00 -35.23 380.83 -8.13 -43.36 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -5.56 Total: 10.41 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -2.29 Total: 6.75 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: 0.59 Total: -59.03 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -1.59 Total: -23.77 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.23 -8.13 -43.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414400804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.691 kcal (2) G-P(sol) polarization free energy of solvation -35.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds