Wall clock time and date at job start Sat Apr 11 2020 06:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99495 * 2 1 4 4 H 1.48495 * 109.47116 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47293 * 300.00024 * 3 2 1 6 6 H 1.48499 * 109.47608 * 60.00257 * 3 2 1 7 7 C 1.37873 * 120.00345 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99923 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00051 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46751 * 179.97438 * 9 7 2 11 11 C 1.34962 * 125.97057 * 125.00134 * 10 9 7 12 12 C 1.35243 * 107.85356 * 179.71745 * 11 10 9 13 13 C 1.40397 * 107.86884 * 0.24300 * 12 11 10 14 14 N 1.40201 * 125.97169 * 179.97438 * 13 12 11 15 15 C 1.34768 * 120.00133 * 359.97438 * 14 13 12 16 16 O 1.21596 * 120.00215 * 359.97438 * 15 14 13 17 17 N 1.34780 * 120.00282 * 180.02562 * 15 14 13 18 18 C 1.46494 * 120.00323 * 179.97438 * 17 15 14 19 19 H 1.09011 * 109.47148 * 324.99529 * 18 17 15 20 20 C 1.52995 * 109.47534 * 84.99875 * 18 17 15 21 21 O 1.42900 * 109.47094 * 64.99990 * 20 18 17 22 22 C 1.52999 * 109.47196 * 205.00229 * 18 17 15 23 23 C 1.52994 * 109.47641 * 64.99467 * 22 18 17 24 24 O 1.43755 * 109.63429 * 293.91308 * 23 22 18 25 25 C 1.44579 * 104.91683 * 215.70846 * 24 23 22 26 26 C 1.54910 * 101.64108 * 36.26761 * 25 24 23 27 27 O 1.43366 * 109.63343 * 174.69227 * 23 22 18 28 28 N 1.31203 * 108.05668 * 359.97438 * 13 12 11 29 29 H 0.96998 * 120.00621 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.46855 * 59.99877 * 9 7 2 31 31 H 1.09001 * 109.46564 * 299.99623 * 9 7 2 32 32 H 1.08002 * 126.07726 * 359.97438 * 11 10 9 33 33 H 1.08003 * 126.06335 * 180.26555 * 12 11 10 34 34 H 0.96998 * 119.99799 * 179.97438 * 14 13 12 35 35 H 0.96998 * 119.99650 * 359.97438 * 17 15 14 36 36 H 1.08995 * 109.47459 * 185.00420 * 20 18 17 37 37 H 1.09007 * 109.46873 * 304.99918 * 20 18 17 38 38 H 0.96703 * 113.99845 * 180.02562 * 21 20 18 39 39 H 1.09004 * 109.47180 * 185.00106 * 22 18 17 40 40 H 1.09010 * 109.46968 * 304.99259 * 22 18 17 41 41 H 1.09004 * 109.62659 * 54.29898 * 23 22 18 42 42 H 1.08996 * 111.08980 * 278.15027 * 25 24 23 43 43 H 1.09005 * 110.97736 * 154.32947 * 25 24 23 44 44 H 1.09008 * 110.69503 * 205.96183 * 26 25 24 45 45 H 1.09001 * 110.84976 * 82.82114 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4992 0.0005 10 7 2.2033 -3.6126 0.0005 11 6 2.2424 -4.6223 0.8953 12 6 3.2572 -5.4457 0.5471 13 6 3.8662 -4.9169 -0.6020 14 7 4.9597 -5.4701 -1.2832 15 6 5.5205 -6.6132 -0.8415 16 8 5.0786 -7.1645 0.1480 17 7 6.5720 -7.1447 -1.4961 18 6 7.1820 -8.3870 -1.0157 19 1 7.1458 -8.4121 0.0735 20 6 6.4135 -9.5838 -1.5793 21 8 6.5584 -9.6165 -3.0006 22 6 8.6387 -8.4522 -1.4790 23 6 9.4357 -7.3271 -0.8160 24 8 8.9662 -6.0556 -1.2948 25 6 10.1481 -5.2262 -1.3689 26 6 11.2189 -6.2482 -1.8258 27 8 10.8238 -7.4590 -1.1495 28 7 3.2334 -3.8145 -0.9269 29 1 -0.4851 0.8400 -0.0004 30 1 0.6249 -2.5571 -0.8897 31 1 0.6242 -2.5567 0.8904 32 1 1.5784 -4.7521 1.7371 33 1 3.5472 -6.3500 1.0616 34 1 5.3125 -5.0301 -2.0723 35 1 6.9248 -6.7047 -2.2852 36 1 6.8108 -10.5046 -1.1523 37 1 5.3579 -9.4908 -1.3237 38 1 6.0956 -10.3512 -3.4263 39 1 9.0664 -9.4148 -1.1984 40 1 8.6809 -8.3379 -2.5623 41 1 9.3124 -7.3793 0.2657 42 1 10.3972 -4.8101 -0.3928 43 1 10.0237 -4.4347 -2.1080 44 1 12.2124 -5.9346 -1.5052 45 1 11.1894 -6.3838 -2.9069 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414400804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:06 Heat of formation + Delta-G solvation = -104.700367 kcal Electronic energy + Delta-G solvation = -29778.294304 eV Core-core repulsion = 25411.418459 eV Total energy + Delta-G solvation = -4366.875845 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.20074 -41.46234 -40.78501 -38.36220 -36.26900 -36.02067 -35.73663 -35.23976 -33.22340 -32.26409 -30.92270 -30.40487 -28.49882 -27.96883 -25.16705 -24.37266 -23.80212 -23.18503 -22.11396 -21.59867 -21.17709 -19.24916 -18.69292 -18.48298 -18.23513 -18.05654 -17.60489 -17.27644 -16.82403 -16.68140 -16.22684 -16.02170 -15.86141 -15.54705 -15.45087 -14.94093 -14.79054 -14.47121 -14.25430 -14.10120 -13.94938 -13.77236 -13.65869 -13.64276 -13.17723 -12.93911 -12.80632 -12.70993 -12.46311 -12.29788 -12.06050 -12.01406 -11.58900 -11.36216 -11.16731 -11.08747 -10.87643 -10.71566 -10.62933 -10.08233 -9.68669 -9.01123 -8.31963 -6.46202 1.11392 1.19661 1.37506 1.38803 1.52296 1.75710 2.15368 2.36873 2.46318 2.48042 2.96591 2.99270 3.20539 3.43079 3.65720 3.81318 3.88176 4.00042 4.06480 4.15035 4.24190 4.30405 4.44352 4.49661 4.55110 4.64113 4.73137 4.78851 4.81515 4.84133 4.92248 4.96292 4.97935 5.03917 5.17968 5.21389 5.57288 5.60865 5.78982 5.93175 6.01482 6.08316 6.32091 6.65789 6.82104 6.90777 7.19453 7.23782 7.51064 8.75630 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013487 B = 0.002526 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.535055 B =11082.258535 C =12666.655712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.973 3.027 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.546 4.546 8 H 0.051 0.949 9 C 0.273 3.727 10 N -0.346 5.346 11 C 0.055 3.945 12 C -0.291 4.291 13 C 0.286 3.714 14 N -0.638 5.638 15 C 0.715 3.285 16 O -0.604 6.604 17 N -0.702 5.702 18 C 0.170 3.830 19 H 0.095 0.905 20 C 0.068 3.932 21 O -0.580 6.580 22 C -0.120 4.120 23 C 0.230 3.770 24 O -0.388 6.388 25 C 0.009 3.991 26 C 0.020 3.980 27 O -0.401 6.401 28 N -0.350 5.350 29 H 0.272 0.728 30 H 0.021 0.979 31 H 0.059 0.941 32 H 0.201 0.799 33 H 0.168 0.832 34 H 0.417 0.583 35 H 0.410 0.590 36 H 0.081 0.919 37 H 0.035 0.965 38 H 0.395 0.605 39 H 0.116 0.884 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.124 0.876 44 H 0.117 0.883 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.612 -19.006 -4.480 29.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.797 3.203 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.584 4.584 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.128 5.128 11 C -0.093 4.093 12 C -0.323 4.323 13 C 0.030 3.970 14 N -0.289 5.289 15 C 0.415 3.585 16 O -0.483 6.483 17 N -0.358 5.358 18 C 0.065 3.935 19 H 0.113 0.887 20 C -0.011 4.011 21 O -0.388 6.388 22 C -0.158 4.158 23 C 0.135 3.865 24 O -0.308 6.308 25 C -0.067 4.067 26 C -0.055 4.055 27 O -0.322 6.322 28 N -0.181 5.181 29 H 0.082 0.918 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.218 0.782 33 H 0.185 0.815 34 H 0.253 0.747 35 H 0.246 0.754 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.244 0.756 39 H 0.134 0.866 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.142 0.858 44 H 0.135 0.865 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 21.206 -17.959 -4.309 28.121 hybrid contribution 0.035 0.442 -0.230 0.499 sum 21.240 -17.518 -4.539 27.904 Atomic orbital electron populations 1.70001 1.07209 1.28696 1.50117 1.25747 0.95854 1.02744 0.93917 0.85287 0.78378 0.78342 0.78318 1.19942 1.19812 1.19461 1.21435 0.93359 0.91010 1.52607 0.93033 1.19327 0.85677 0.81549 0.98049 1.48811 1.23866 1.20419 1.19728 1.23154 1.00525 0.88904 0.96731 1.21678 1.02216 1.06522 1.01849 1.19104 0.90841 0.92871 0.94137 1.41405 1.30694 1.25230 1.31567 1.15753 0.80631 0.79495 0.82652 1.90807 1.65677 1.63485 1.28344 1.44844 1.31767 1.26852 1.32289 1.20948 0.91480 0.81832 0.99261 0.88743 1.22558 0.98803 0.97857 0.81882 1.86408 1.77352 1.55655 1.19397 1.22123 0.91948 0.99152 1.02610 1.24160 0.79925 0.84912 0.97540 1.89215 1.31177 1.22941 1.87492 1.24540 0.83491 0.95367 1.03265 1.24367 1.00108 0.82517 0.98554 1.88861 1.25143 1.40231 1.78011 1.77243 1.05031 1.18092 1.17746 0.91845 0.96143 0.92347 0.78223 0.81521 0.74651 0.75378 0.90073 0.94648 0.75555 0.86601 0.89489 0.90337 0.90612 0.85759 0.86487 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.77 13.29 21.45 0.28 -52.48 16 2 C 0.02 0.98 5.46 84.65 0.46 1.44 16 3 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.55 -31.37 9.23 25.60 0.24 -31.13 16 8 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 9 C 0.27 14.47 6.26 85.64 0.54 15.01 16 10 N -0.35 -16.79 3.67 -351.83 -1.29 -18.09 16 11 C 0.06 2.26 11.44 83.52 0.96 3.22 16 12 C -0.29 -11.92 9.61 22.10 0.21 -11.71 16 13 C 0.29 12.04 8.11 133.31 1.08 13.12 16 14 N -0.64 -21.11 5.45 -321.24 -1.75 -22.86 16 15 C 0.72 21.82 8.50 179.06 1.52 23.34 16 16 O -0.60 -21.78 13.13 -4.02 -0.05 -21.83 16 17 N -0.70 -15.37 3.86 -457.82 -1.77 -17.14 16 18 C 0.17 3.01 2.37 44.99 0.11 3.12 16 19 H 0.09 1.87 7.58 -2.38 -0.02 1.86 16 20 C 0.07 1.05 6.85 71.98 0.49 1.54 16 21 O -0.58 -8.32 12.83 -148.98 -1.91 -10.24 16 22 C -0.12 -1.70 4.65 30.59 0.14 -1.56 16 23 C 0.23 3.80 4.01 71.98 0.29 4.09 16 24 O -0.39 -7.06 9.19 -126.21 -1.16 -8.22 16 25 C 0.01 0.12 7.95 72.63 0.58 0.70 16 26 C 0.02 0.22 8.07 72.63 0.59 0.81 16 27 O -0.40 -6.61 11.22 -126.21 -1.42 -8.02 16 28 N -0.35 -16.92 12.42 -54.44 -0.68 -17.59 16 29 H 0.27 14.53 8.31 -92.71 -0.77 13.75 16 30 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 3.02 8.07 -2.39 -0.02 3.00 16 32 H 0.20 6.46 8.06 -2.91 -0.02 6.44 16 33 H 0.17 6.62 5.91 -2.91 -0.02 6.61 16 34 H 0.42 11.70 8.84 -92.71 -0.82 10.88 16 35 H 0.41 8.00 7.72 -92.71 -0.72 7.28 16 36 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.04 0.71 8.14 -2.38 -0.02 0.70 16 38 H 0.39 2.64 9.12 -74.06 -0.68 1.97 16 39 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.09 1.33 7.73 -2.38 -0.02 1.31 16 41 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 44 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 45 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -75.62 380.83 -1.67 -77.29 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: -1.15 Total: 31.08 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 7.20 Total: 21.98 kcal Atomic # 7 Polarization: -122.96 SS G_CDS: -5.20 Total: -128.16 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -4.54 Total: -48.31 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -75.62 -1.67 -77.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414400804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.411 kcal (2) G-P(sol) polarization free energy of solvation -75.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds