Wall clock time and date at job start Sat Apr 11 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 120.00313 * 2 1 4 4 H 1.48499 * 109.47330 * 240.00256 * 3 2 1 5 5 H 1.48501 * 109.47211 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47250 * 120.00131 * 3 2 1 7 7 C 1.38816 * 119.99466 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99414 * 196.89419 * 7 2 1 9 9 N 1.36930 * 120.00149 * 16.89579 * 7 2 1 10 10 C 1.47154 * 120.98108 * 206.23283 * 9 7 2 11 11 C 1.53300 * 108.38287 * 230.54790 * 10 9 7 12 12 O 1.42966 * 109.22267 * 307.69639 * 11 10 9 13 13 C 1.42959 * 114.16466 * 62.58510 * 12 11 10 14 14 H 1.09001 * 109.51850 * 57.39304 * 13 12 11 15 15 C 1.53000 * 109.51374 * 177.49560 * 13 12 11 16 16 N 1.46505 * 109.46875 * 299.89746 * 15 13 12 17 17 C 1.34774 * 119.99888 * 179.97438 * 16 15 13 18 18 O 1.21282 * 120.00073 * 0.02562 * 17 16 15 19 19 C 1.50707 * 119.99701 * 179.97438 * 17 16 15 20 20 C 1.53000 * 109.46689 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.47067 * 180.02562 * 20 19 17 22 22 H 1.09000 * 110.66109 * 52.07862 * 21 20 19 23 23 N 1.47322 * 110.59423 * 289.17320 * 21 20 19 24 24 C 1.34522 * 106.61319 * 241.24802 * 23 21 20 25 25 O 1.21546 * 123.76839 * 180.20732 * 24 23 21 26 26 N 1.33790 * 112.46457 * 0.38105 * 24 23 21 27 27 C 1.34769 * 111.64194 * 359.59785 * 26 24 23 28 28 O 1.21235 * 127.16293 * 180.19309 * 27 26 24 29 29 C 1.47173 * 120.94350 * 26.28070 * 9 7 2 30 30 H 0.96999 * 119.99620 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.68319 * 110.82981 * 10 9 7 32 32 H 1.08994 * 109.71190 * 350.28771 * 10 9 7 33 33 H 1.08999 * 109.50969 * 187.77329 * 11 10 9 34 34 H 1.08999 * 109.55237 * 67.64623 * 11 10 9 35 35 H 1.08997 * 109.47561 * 179.89625 * 15 13 12 36 36 H 1.09001 * 109.47168 * 59.89347 * 15 13 12 37 37 H 0.96997 * 119.99490 * 359.97438 * 16 15 13 38 38 H 1.09002 * 109.46530 * 60.00672 * 19 17 16 39 39 H 1.08991 * 109.47273 * 300.00498 * 19 17 16 40 40 H 1.08997 * 109.47561 * 60.00312 * 20 19 17 41 41 H 1.09001 * 109.47168 * 300.00035 * 20 19 17 42 42 H 0.96998 * 126.69027 * 61.50942 * 23 21 20 43 43 H 0.96994 * 124.18288 * 179.85597 * 26 24 23 44 44 H 1.09004 * 109.72920 * 9.75443 * 29 9 7 45 45 H 1.08999 * 109.64647 * 249.19722 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0553 -1.2225 0.2713 9 7 1.3698 -2.3623 -0.3457 10 6 1.8341 -3.6635 0.1611 11 6 1.9815 -4.6205 -1.0273 12 8 0.7652 -4.6291 -1.7786 13 6 0.4245 -3.3660 -2.3550 14 1 1.2374 -3.0278 -2.9976 15 6 -0.8545 -3.5101 -3.1822 16 7 -0.6375 -4.4890 -4.2504 17 6 -1.6339 -4.7805 -5.1099 18 8 -2.7100 -4.2321 -4.9993 19 6 -1.4104 -5.7870 -6.2091 20 6 -2.6895 -5.9312 -7.0362 21 6 -2.4629 -6.9535 -8.1517 22 1 -2.0670 -7.8844 -7.7457 23 7 -1.5567 -6.4088 -9.1776 24 6 -2.2526 -6.3784 -10.3285 25 8 -1.7964 -5.9835 -11.3836 26 7 -3.5041 -6.8280 -10.1812 27 6 -3.7496 -7.2078 -8.9116 28 8 -4.7845 -7.6584 -8.4692 29 6 0.1976 -2.3437 -1.2354 30 1 -0.4849 0.8401 0.0004 31 1 1.1058 -4.0638 0.8665 32 1 2.7972 -3.5426 0.6568 33 1 2.1906 -5.6258 -0.6615 34 1 2.8007 -4.2873 -1.6646 35 1 -1.1147 -2.5464 -3.6199 36 1 -1.6670 -3.8483 -2.5391 37 1 0.2233 -4.9272 -4.3390 38 1 -1.1497 -6.7508 -5.7716 39 1 -0.5984 -5.4483 -6.8523 40 1 -2.9500 -4.9674 -7.4736 41 1 -3.5018 -6.2698 -6.3931 42 1 -0.6365 -6.1303 -9.0492 43 1 -4.1533 -6.8781 -10.9001 44 1 0.0775 -1.3492 -1.6651 45 1 -0.6956 -2.6103 -0.6704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482204901.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:35 Heat of formation + Delta-G solvation = -107.175507 kcal Electronic energy + Delta-G solvation = -29132.719438 eV Core-core repulsion = 24765.736262 eV Total energy + Delta-G solvation = -4366.983175 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.81213 -39.79885 -39.06548 -38.51671 -36.88233 -35.14229 -34.80566 -34.36722 -32.70489 -31.42359 -30.97588 -28.50782 -27.31729 -25.60093 -23.87130 -23.34459 -23.05506 -21.88847 -21.60723 -20.46914 -19.61115 -18.84663 -17.47073 -17.34697 -17.10756 -16.91365 -16.27561 -16.17574 -16.06150 -15.65834 -15.57899 -15.14703 -14.71666 -14.57181 -14.38554 -14.21931 -13.91017 -13.40966 -13.31582 -13.29682 -12.86970 -12.79395 -12.41902 -12.20937 -11.59719 -11.58166 -11.41953 -11.15405 -10.88762 -10.85635 -10.79667 -10.74217 -10.48683 -10.34325 -10.11187 -10.03809 -9.88210 -9.71889 -9.15707 -8.95334 -8.60526 -6.82230 -5.90318 -3.34266 1.10483 1.93555 2.53414 2.59994 2.64204 3.15362 3.31315 3.37668 3.38265 3.47226 4.09115 4.20225 4.28401 4.38790 4.49071 4.73452 4.86683 4.90242 5.11695 5.14469 5.29874 5.45155 5.47666 5.54373 5.55239 5.69325 5.78808 5.85867 5.94537 6.04443 6.16857 6.23750 6.29146 6.41314 6.42815 6.57104 6.71562 6.88855 6.99668 7.40831 7.54366 7.64745 7.65254 7.75799 8.23231 8.27202 9.04753 9.67700 10.24411 11.17827 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019144 B = 0.001922 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.261680 B =14563.887102 C =14995.772014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.259 4.259 8 H 0.068 0.932 9 N -0.594 5.594 10 C 0.109 3.891 11 C 0.051 3.949 12 O -0.391 6.391 13 C 0.055 3.945 14 H 0.056 0.944 15 C 0.132 3.868 16 N -0.719 5.719 17 C 0.508 3.492 18 O -0.543 6.543 19 C -0.139 4.139 20 C -0.105 4.105 21 C 0.092 3.908 22 H 0.134 0.866 23 N -0.721 5.721 24 C 0.705 3.295 25 O -0.545 6.545 26 N -0.681 5.681 27 C 0.530 3.470 28 O -0.461 6.461 29 C 0.152 3.848 30 H 0.257 0.743 31 H 0.027 0.973 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.402 0.598 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.442 0.558 43 H 0.433 0.567 44 H 0.096 0.904 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.299 -16.323 -16.363 23.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.388 4.388 8 H 0.086 0.914 9 N -0.318 5.318 10 C -0.018 4.018 11 C -0.028 4.028 12 O -0.310 6.310 13 C -0.004 4.004 14 H 0.074 0.926 15 C 0.008 3.992 16 N -0.369 5.369 17 C 0.294 3.706 18 O -0.420 6.420 19 C -0.179 4.179 20 C -0.144 4.144 21 C -0.017 4.017 22 H 0.151 0.849 23 N -0.387 5.387 24 C 0.404 3.596 25 O -0.418 6.418 26 N -0.352 5.352 27 C 0.315 3.685 28 O -0.329 6.329 29 C 0.026 3.974 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.236 0.764 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.119 0.881 42 H 0.287 0.713 43 H 0.275 0.725 44 H 0.114 0.886 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.583 -15.947 -16.496 23.089 hybrid contribution 1.199 0.988 -0.100 1.557 sum -1.384 -14.959 -16.596 22.386 Atomic orbital electron populations 1.70008 1.05253 1.25959 1.53331 1.25070 0.95368 0.98543 1.00597 0.86321 0.78895 0.83085 0.78175 1.20956 1.21481 1.20788 1.19141 0.92627 0.84494 1.42518 0.91379 1.44040 1.33754 1.01364 1.52639 1.21601 0.98648 0.87550 0.93968 1.23006 0.86115 0.99621 0.94015 1.87766 1.42217 1.31523 1.69488 1.23148 0.94967 0.86476 0.95856 0.92645 1.21434 0.97749 0.92384 0.87650 1.45986 1.15576 1.44165 1.31209 1.20444 0.84293 0.83123 0.82789 1.90741 1.25131 1.52817 1.73360 1.21628 0.99267 1.00280 0.96761 1.21566 0.98929 0.98923 0.94960 1.22228 0.88214 1.00633 0.90632 0.84895 1.45607 1.16156 1.68848 1.08073 1.15852 0.80828 0.78169 0.84775 1.91081 1.71742 1.51257 1.27732 1.44331 1.15298 1.61601 1.13951 1.20764 0.89482 0.75854 0.82417 1.90882 1.28512 1.40659 1.72856 1.21317 0.89509 0.97605 0.89016 0.93295 0.95545 0.91961 0.90007 0.93868 0.89992 0.90683 0.76353 0.88110 0.88859 0.89528 0.88055 0.71310 0.72457 0.88585 0.95054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.40 11.14 55.49 0.62 -24.78 16 2 C 0.00 0.09 4.94 -17.43 -0.09 0.00 16 3 Si 0.91 20.99 29.59 -169.99 -5.03 15.96 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.26 -6.83 9.65 -15.06 -0.15 -6.97 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 9 N -0.59 -14.33 3.05 -171.80 -0.52 -14.85 16 10 C 0.11 2.16 6.74 -3.53 -0.02 2.14 16 11 C 0.05 0.82 6.99 37.31 0.26 1.08 16 12 O -0.39 -6.69 10.14 -35.23 -0.36 -7.05 16 13 C 0.06 0.97 2.86 -26.58 -0.08 0.89 16 14 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 15 C 0.13 2.05 5.37 -4.04 -0.02 2.03 16 16 N -0.72 -8.58 5.45 -60.29 -0.33 -8.90 16 17 C 0.51 5.88 7.83 -10.98 -0.09 5.79 16 18 O -0.54 -8.70 15.98 5.56 0.09 -8.61 16 19 C -0.14 -0.82 5.64 -27.88 -0.16 -0.98 16 20 C -0.10 -0.68 4.25 -26.73 -0.11 -0.79 16 21 C 0.09 0.41 3.65 -68.20 -0.25 0.16 16 22 H 0.13 0.26 8.14 -51.93 -0.42 -0.16 16 23 N -0.72 -3.31 6.06 -59.19 -0.36 -3.67 16 24 C 0.70 5.32 8.99 -88.02 -0.79 4.53 16 25 O -0.54 -6.26 18.04 5.32 0.10 -6.16 16 26 N -0.68 -4.14 5.70 -15.79 -0.09 -4.23 16 27 C 0.53 3.63 8.14 -10.55 -0.09 3.55 16 28 O -0.46 -4.64 18.02 5.60 0.10 -4.54 16 29 C 0.15 3.45 4.73 -3.52 -0.02 3.43 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.40 3.89 8.35 -40.82 -0.34 3.55 16 38 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.34 7.68 -51.93 -0.40 -0.06 16 40 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.10 0.80 8.10 -51.93 -0.42 0.38 16 42 H 0.44 1.22 8.61 -40.82 -0.35 0.87 16 43 H 0.43 1.95 8.96 -40.82 -0.37 1.58 16 44 H 0.10 2.41 6.15 -51.93 -0.32 2.09 16 45 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 377.66 15.07 5.69 5.69 Total: -1.00 -35.73 377.66 -8.07 -43.80 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.38 Total: 2.47 kcal Atomic # 6 Polarization: 16.46 SS G_CDS: -1.59 Total: 14.86 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.68 Total: -56.43 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.07 Total: -26.36 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.73 -8.07 -43.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482204901.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.372 kcal (2) G-P(sol) polarization free energy of solvation -35.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds