Wall clock time and date at job start Sat Apr 11 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 120.00313 * 2 1 4 4 H 1.48499 * 109.47330 * 240.00256 * 3 2 1 5 5 H 1.48501 * 109.47211 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47250 * 120.00131 * 3 2 1 7 7 C 1.38816 * 119.99466 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99414 * 196.89419 * 7 2 1 9 9 N 1.36930 * 120.00149 * 16.89579 * 7 2 1 10 10 C 1.47154 * 120.98108 * 206.23283 * 9 7 2 11 11 C 1.53300 * 108.38287 * 230.54790 * 10 9 7 12 12 O 1.42966 * 109.22267 * 307.69639 * 11 10 9 13 13 C 1.42959 * 114.16466 * 62.58510 * 12 11 10 14 14 H 1.09001 * 109.51850 * 57.39304 * 13 12 11 15 15 C 1.53000 * 109.51374 * 177.49560 * 13 12 11 16 16 N 1.46505 * 109.46875 * 299.89746 * 15 13 12 17 17 C 1.34774 * 119.99888 * 179.97438 * 16 15 13 18 18 O 1.21282 * 120.00073 * 0.02562 * 17 16 15 19 19 C 1.50707 * 119.99701 * 179.97438 * 17 16 15 20 20 C 1.53000 * 109.46689 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.47067 * 180.02562 * 20 19 17 22 22 H 1.09000 * 110.66109 * 52.07862 * 21 20 19 23 23 N 1.47322 * 110.59423 * 289.17320 * 21 20 19 24 24 C 1.34522 * 106.61319 * 241.24802 * 23 21 20 25 25 O 1.21546 * 123.76839 * 180.20732 * 24 23 21 26 26 N 1.33790 * 112.46457 * 0.38105 * 24 23 21 27 27 C 1.34769 * 111.64194 * 359.59785 * 26 24 23 28 28 O 1.21235 * 127.16293 * 180.19309 * 27 26 24 29 29 C 1.47173 * 120.94350 * 26.28070 * 9 7 2 30 30 H 0.96999 * 119.99620 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.68319 * 110.82981 * 10 9 7 32 32 H 1.08994 * 109.71190 * 350.28771 * 10 9 7 33 33 H 1.08999 * 109.50969 * 187.77329 * 11 10 9 34 34 H 1.08999 * 109.55237 * 67.64623 * 11 10 9 35 35 H 1.08997 * 109.47561 * 179.89625 * 15 13 12 36 36 H 1.09001 * 109.47168 * 59.89347 * 15 13 12 37 37 H 0.96997 * 119.99490 * 359.97438 * 16 15 13 38 38 H 1.09002 * 109.46530 * 60.00672 * 19 17 16 39 39 H 1.08991 * 109.47273 * 300.00498 * 19 17 16 40 40 H 1.08997 * 109.47561 * 60.00312 * 20 19 17 41 41 H 1.09001 * 109.47168 * 300.00035 * 20 19 17 42 42 H 0.96998 * 126.69027 * 61.50942 * 23 21 20 43 43 H 0.96994 * 124.18288 * 179.85597 * 26 24 23 44 44 H 1.09004 * 109.72920 * 9.75443 * 29 9 7 45 45 H 1.08999 * 109.64647 * 249.19722 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0553 -1.2225 0.2713 9 7 1.3698 -2.3623 -0.3457 10 6 1.8341 -3.6635 0.1611 11 6 1.9815 -4.6205 -1.0273 12 8 0.7652 -4.6291 -1.7786 13 6 0.4245 -3.3660 -2.3550 14 1 1.2374 -3.0278 -2.9976 15 6 -0.8545 -3.5101 -3.1822 16 7 -0.6375 -4.4890 -4.2504 17 6 -1.6339 -4.7805 -5.1099 18 8 -2.7100 -4.2321 -4.9993 19 6 -1.4104 -5.7870 -6.2091 20 6 -2.6895 -5.9312 -7.0362 21 6 -2.4629 -6.9535 -8.1517 22 1 -2.0670 -7.8844 -7.7457 23 7 -1.5567 -6.4088 -9.1776 24 6 -2.2526 -6.3784 -10.3285 25 8 -1.7964 -5.9835 -11.3836 26 7 -3.5041 -6.8280 -10.1812 27 6 -3.7496 -7.2078 -8.9116 28 8 -4.7845 -7.6584 -8.4692 29 6 0.1976 -2.3437 -1.2354 30 1 -0.4849 0.8401 0.0004 31 1 1.1058 -4.0638 0.8665 32 1 2.7972 -3.5426 0.6568 33 1 2.1906 -5.6258 -0.6615 34 1 2.8007 -4.2873 -1.6646 35 1 -1.1147 -2.5464 -3.6199 36 1 -1.6670 -3.8483 -2.5391 37 1 0.2233 -4.9272 -4.3390 38 1 -1.1497 -6.7508 -5.7716 39 1 -0.5984 -5.4483 -6.8523 40 1 -2.9500 -4.9674 -7.4736 41 1 -3.5018 -6.2698 -6.3931 42 1 -0.6365 -6.1303 -9.0492 43 1 -4.1533 -6.8781 -10.9001 44 1 0.0775 -1.3492 -1.6651 45 1 -0.6956 -2.6103 -0.6704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482204901.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:34 Heat of formation + Delta-G solvation = -138.822100 kcal Electronic energy + Delta-G solvation = -29134.091737 eV Core-core repulsion = 24765.736262 eV Total energy + Delta-G solvation = -4368.355475 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.35367 -40.85063 -39.94322 -39.70952 -37.53112 -36.45856 -35.84451 -35.53658 -33.35269 -33.21535 -32.36396 -29.40175 -28.73472 -27.03583 -25.10631 -24.54918 -23.69635 -23.08273 -22.29323 -21.65141 -20.98017 -19.40042 -18.92119 -18.17381 -17.98462 -17.57427 -17.48108 -17.11216 -16.86146 -16.77200 -16.62968 -16.29627 -16.08895 -15.52712 -15.44579 -15.27468 -15.17555 -15.01486 -14.59287 -14.45416 -14.12690 -13.72789 -13.42285 -13.17207 -12.99846 -12.92507 -12.64063 -12.52415 -12.20018 -12.19314 -12.11376 -11.97850 -11.85740 -11.48573 -11.37649 -11.30359 -10.93401 -10.74098 -10.54192 -10.49985 -10.05953 -8.75483 -7.91818 -5.39202 0.53882 1.45183 1.46550 1.48397 1.55615 1.72878 1.96408 2.13105 2.27247 2.48263 2.81067 2.95900 3.23080 3.49595 3.56760 3.88793 3.90652 4.06347 4.09450 4.25100 4.31848 4.35632 4.41798 4.48600 4.53973 4.63376 4.68216 4.72804 4.87519 4.97467 5.00666 5.07588 5.08762 5.17921 5.23966 5.45668 5.53366 5.59867 5.83598 5.89474 6.26822 6.33495 6.39408 6.64723 7.05217 7.13874 7.34524 7.74626 8.27718 9.13731 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019144 B = 0.001922 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.261680 B =14563.887102 C =14995.772014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.970 3.030 4 H -0.274 1.274 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.266 4.266 8 H 0.074 0.926 9 N -0.614 5.614 10 C 0.100 3.900 11 C 0.058 3.942 12 O -0.387 6.387 13 C 0.078 3.922 14 H 0.066 0.934 15 C 0.142 3.858 16 N -0.709 5.709 17 C 0.502 3.498 18 O -0.594 6.594 19 C -0.126 4.126 20 C -0.101 4.101 21 C 0.107 3.893 22 H 0.175 0.825 23 N -0.702 5.702 24 C 0.704 3.296 25 O -0.586 6.586 26 N -0.675 5.675 27 C 0.530 3.470 28 O -0.496 6.496 29 C 0.157 3.843 30 H 0.251 0.749 31 H 0.014 0.986 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.418 0.582 38 H 0.139 0.861 39 H 0.128 0.872 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.454 0.546 43 H 0.438 0.562 44 H 0.065 0.935 45 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.246 -18.436 -17.353 25.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.798 3.202 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.200 1.200 7 C -0.396 4.396 8 H 0.092 0.908 9 N -0.339 5.339 10 C -0.025 4.025 11 C -0.019 4.019 12 O -0.306 6.306 13 C 0.018 3.982 14 H 0.084 0.916 15 C 0.017 3.983 16 N -0.361 5.361 17 C 0.291 3.709 18 O -0.475 6.475 19 C -0.165 4.165 20 C -0.140 4.140 21 C -0.001 4.001 22 H 0.192 0.808 23 N -0.368 5.368 24 C 0.403 3.597 25 O -0.463 6.463 26 N -0.346 5.346 27 C 0.317 3.683 28 O -0.367 6.367 29 C 0.030 3.970 30 H 0.060 0.940 31 H 0.032 0.968 32 H 0.090 0.910 33 H 0.140 0.860 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.255 0.745 38 H 0.157 0.843 39 H 0.146 0.854 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.301 0.699 43 H 0.281 0.719 44 H 0.083 0.917 45 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges 0.030 -18.113 -17.479 25.172 hybrid contribution 0.389 1.609 0.296 1.681 sum 0.419 -16.505 -17.183 23.829 Atomic orbital electron populations 1.70182 1.06767 1.26132 1.55146 1.25852 0.96060 1.01715 1.01087 0.85303 0.77505 0.78909 0.78513 1.20012 1.22311 1.20029 1.19522 0.93057 0.85578 1.41402 0.90783 1.44352 1.33720 1.02404 1.53423 1.21851 0.98471 0.86511 0.95704 1.23071 0.85888 1.00638 0.92324 1.87784 1.42965 1.30480 1.69379 1.22722 0.96020 0.85353 0.94064 0.91596 1.21020 0.95968 0.92981 0.88323 1.45822 1.16682 1.43406 1.30209 1.21491 0.83050 0.83162 0.83200 1.90732 1.27244 1.54869 1.74688 1.21684 0.99726 1.00112 0.95002 1.21451 0.98999 0.98348 0.95229 1.22230 0.86966 1.01549 0.89351 0.80763 1.45538 1.16453 1.67821 1.06943 1.15957 0.81033 0.77819 0.84874 1.91059 1.72547 1.53247 1.29464 1.44308 1.15160 1.60902 1.14195 1.21110 0.89747 0.74926 0.82566 1.90873 1.30034 1.42374 1.73415 1.21115 0.88171 0.97660 0.90014 0.93987 0.96841 0.91008 0.85975 0.92588 0.91192 0.92784 0.74499 0.84329 0.85439 0.91633 0.89643 0.69861 0.71905 0.91655 0.98491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.76 11.14 21.65 0.24 -54.51 16 2 C -0.05 -2.82 4.94 84.86 0.42 -2.40 16 3 Si 0.97 43.60 29.59 68.60 2.03 45.63 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 7 C -0.27 -14.09 9.65 84.04 0.81 -13.28 16 8 H 0.07 3.75 7.88 -2.91 -0.02 3.73 16 9 N -0.61 -29.82 3.05 -697.47 -2.13 -31.94 16 10 C 0.10 3.86 6.74 86.36 0.58 4.44 16 11 C 0.06 1.70 6.99 72.08 0.50 2.20 16 12 O -0.39 -12.31 10.14 -148.98 -1.51 -13.82 16 13 C 0.08 2.69 2.86 30.70 0.09 2.78 16 14 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 15 C 0.14 4.45 5.37 86.38 0.46 4.91 16 16 N -0.71 -15.44 5.45 -463.05 -2.52 -17.96 16 17 C 0.50 10.69 7.83 87.66 0.69 11.37 16 18 O -0.59 -19.13 15.98 -3.04 -0.05 -19.18 16 19 C -0.13 -0.97 5.64 29.85 0.17 -0.81 16 20 C -0.10 -1.07 4.25 30.59 0.13 -0.94 16 21 C 0.11 0.60 3.65 44.37 0.16 0.77 16 22 H 0.18 -0.27 8.14 -2.39 -0.02 -0.28 16 23 N -0.70 -4.22 6.06 -459.59 -2.79 -7.01 16 24 C 0.70 9.50 8.99 179.44 1.61 11.12 16 25 O -0.59 -12.99 18.04 -3.86 -0.07 -13.06 16 26 N -0.68 -7.50 5.70 -441.12 -2.52 -10.01 16 27 C 0.53 6.48 8.14 87.94 0.72 7.19 16 28 O -0.50 -9.69 18.02 -2.89 -0.05 -9.74 16 29 C 0.16 7.36 4.73 86.35 0.41 7.77 16 30 H 0.25 14.32 8.31 -92.71 -0.77 13.54 16 31 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.07 2.59 7.96 -2.39 -0.02 2.57 16 33 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.42 6.49 8.35 -92.71 -0.77 5.72 16 38 H 0.14 0.18 8.14 -2.39 -0.02 0.16 16 39 H 0.13 0.21 7.68 -2.39 -0.02 0.19 16 40 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 41 H 0.09 1.25 8.10 -2.39 -0.02 1.23 16 42 H 0.45 0.68 8.61 -92.71 -0.80 -0.12 16 43 H 0.44 3.78 8.96 -92.71 -0.83 2.94 16 44 H 0.07 3.44 6.15 -2.38 -0.01 3.43 16 45 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 Total: -1.00 -82.75 377.66 -3.95 -86.70 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -1.34 Total: 9.77 kcal Atomic # 6 Polarization: 28.38 SS G_CDS: 6.75 Total: 35.13 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -9.71 Total: -121.44 kcal Atomic # 8 Polarization: -54.12 SS G_CDS: -1.68 Total: -55.80 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -82.75 -3.95 -86.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482204901.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.118 kcal (2) G-P(sol) polarization free energy of solvation -82.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds