Wall clock time and date at job start Sat Apr 11 2020 06:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34236 * 125.73886 * 2 1 4 4 C 1.38065 * 107.43447 * 180.02562 * 3 2 1 5 5 C 1.47392 * 126.42008 * 179.97438 * 4 3 2 6 6 O 1.21611 * 119.99712 * 180.02562 * 5 4 3 7 7 N 1.34767 * 119.99882 * 359.97438 * 5 4 3 8 8 C 1.46509 * 120.00061 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47271 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.50012 * 59.99634 * 9 8 7 11 11 C 1.53033 * 109.52525 * 180.08179 * 9 8 7 12 12 C 1.53037 * 109.53926 * 181.32870 * 11 9 8 13 13 C 1.53187 * 109.31496 * 298.63545 * 12 11 9 14 14 N 1.46925 * 108.77814 * 54.63183 * 13 12 11 15 15 C 1.36934 * 120.63133 * 126.41593 * 14 13 12 16 16 H 1.08007 * 119.99989 * 331.82512 * 15 14 13 17 17 C 1.38811 * 120.00171 * 151.82752 * 15 14 13 18 18 N 1.31612 * 119.99807 * 343.07049 * 17 15 14 19 19 Si 1.86799 * 119.99900 * 163.06680 * 17 15 14 20 20 H 1.48498 * 109.47417 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46746 * 120.00122 * 19 17 15 22 22 H 1.48502 * 109.47082 * 239.99929 * 19 17 15 23 23 C 1.46923 * 118.73709 * 306.39854 * 14 13 12 24 24 C 1.41391 * 107.15768 * 0.22646 * 4 3 2 25 25 Cl 1.73605 * 126.00581 * 179.73478 * 24 4 3 26 26 N 1.30527 * 107.98823 * 359.62048 * 24 4 3 27 27 H 1.09000 * 109.47098 * 89.99092 * 1 2 3 28 28 H 1.08998 * 109.46757 * 209.99351 * 1 2 3 29 29 H 1.09001 * 109.46812 * 329.99305 * 1 2 3 30 30 H 1.07993 * 126.28317 * 0.03092 * 3 2 1 31 31 H 0.97006 * 120.00297 * 0.02562 * 7 5 4 32 32 H 1.08998 * 109.46679 * 59.99941 * 8 7 5 33 33 H 1.09003 * 109.46860 * 299.99850 * 8 7 5 34 34 H 1.09003 * 109.47006 * 299.93635 * 10 9 8 35 35 H 1.08995 * 109.47227 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.47195 * 59.93876 * 10 9 8 37 37 H 1.09003 * 109.45829 * 301.34863 * 11 9 8 38 38 H 1.09003 * 109.46142 * 61.30483 * 11 9 8 39 39 H 1.09008 * 109.49736 * 178.68060 * 12 11 9 40 40 H 1.09004 * 109.50006 * 58.58829 * 12 11 9 41 41 H 1.09006 * 109.58291 * 294.84531 * 13 12 11 42 42 H 1.08998 * 109.70663 * 174.49301 * 13 12 11 43 43 H 0.97005 * 120.00259 * 179.97438 * 18 17 15 44 44 H 1.09007 * 109.58487 * 293.81588 * 23 14 13 45 45 H 1.09003 * 109.70507 * 173.46217 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2491 1.0896 0.0000 4 6 3.5599 0.6560 -0.0006 5 6 4.7632 1.5072 -0.0013 6 8 5.8678 0.9985 -0.0023 7 7 4.6392 2.8491 -0.0020 8 6 5.8353 3.6953 -0.0033 9 6 5.4186 5.1674 -0.0032 10 6 4.5867 5.4627 1.2465 11 6 6.6671 6.0524 -0.0067 12 6 6.2509 7.5247 0.0269 13 6 5.4266 7.8468 -1.2234 14 7 4.3028 6.9039 -1.3049 15 6 3.0172 7.3594 -1.4265 16 1 2.7460 8.3246 -1.0247 17 6 2.0625 6.5807 -2.0660 18 7 2.4368 5.5819 -2.8370 19 14 0.2464 6.9504 -1.8322 20 1 0.0912 8.1156 -0.9248 21 1 -0.3684 7.2625 -3.1474 22 1 -0.4272 5.7673 -1.2391 23 6 4.5848 5.4628 -1.2539 24 6 3.5316 -0.7576 -0.0063 25 17 4.9153 -1.8061 -0.0158 26 7 2.2823 -1.1358 -0.0007 27 1 -0.3633 0.0002 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3633 0.8899 0.5140 30 1 1.9158 2.1168 0.0005 31 1 3.7581 3.2549 -0.0016 32 1 6.4280 3.4851 -0.8936 33 1 6.4292 3.4861 0.8864 34 1 3.6961 4.8342 1.2469 35 1 4.2905 6.5116 1.2463 36 1 5.1803 5.2524 2.1362 37 1 7.2745 5.8267 0.8698 38 1 7.2466 5.8593 -0.9094 39 1 7.1408 8.1539 0.0481 40 1 5.6505 7.7129 0.9170 41 1 6.0529 7.7464 -2.1099 42 1 5.0447 8.8657 -1.1595 43 1 1.7697 5.0374 -3.2836 44 1 5.1424 5.1679 -2.1429 45 1 3.6485 4.9065 -1.2087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484176039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:49 Heat of formation + Delta-G solvation = 53.961786 kcal Electronic energy + Delta-G solvation = -28400.461048 eV Core-core repulsion = 24481.174475 eV Total energy + Delta-G solvation = -3919.286573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.52908 -39.34891 -38.07293 -36.71901 -34.70754 -33.37112 -33.23009 -31.63095 -30.43688 -29.85662 -27.32996 -26.51696 -25.57312 -25.25670 -22.80025 -22.09340 -21.27478 -20.53160 -19.92265 -18.33477 -17.59186 -16.73273 -16.17393 -15.99918 -15.46509 -15.17732 -14.96650 -14.59015 -14.10859 -13.95963 -13.74834 -13.64779 -13.47108 -13.22616 -13.15692 -12.85399 -12.73433 -12.26605 -12.21305 -11.72617 -11.61645 -11.58854 -11.34657 -11.03718 -10.91129 -10.80011 -10.69696 -10.43476 -10.20318 -10.13218 -9.86168 -9.70549 -9.52730 -9.48633 -9.39359 -8.90457 -8.58797 -8.51968 -6.71865 -5.87304 -3.29385 1.34742 1.36547 1.90349 2.59496 3.22851 3.34776 3.37001 3.57653 3.65081 4.24881 4.39463 4.53135 4.85521 5.02057 5.12061 5.13425 5.18306 5.25306 5.35424 5.46050 5.50319 5.56749 5.78507 5.82189 5.99059 6.04968 6.11690 6.17184 6.28506 6.40153 6.43316 6.50601 6.54060 6.61317 6.78008 6.83650 6.89425 6.95438 7.02848 7.15793 7.26065 7.54263 7.71184 7.90516 8.35870 8.59875 9.12960 9.76438 10.34629 11.20284 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010756 B = 0.004121 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.494088 B = 6792.441491 C = 8861.926931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.349 5.349 3 C 0.116 3.884 4 C -0.272 4.272 5 C 0.589 3.411 6 O -0.539 6.539 7 N -0.715 5.715 8 C 0.139 3.861 9 C -0.103 4.103 10 C -0.125 4.125 11 C -0.095 4.095 12 C -0.135 4.135 13 C 0.143 3.857 14 N -0.589 5.589 15 C -0.245 4.245 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.901 5.901 19 Si 0.896 3.104 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.186 3.814 24 C 0.172 3.828 25 Cl 0.029 6.971 26 N -0.289 5.289 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.194 0.806 31 H 0.401 0.599 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.036 0.964 37 H 0.048 0.952 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.062 0.938 41 H 0.017 0.983 42 H 0.052 0.948 43 H 0.252 0.748 44 H 0.018 0.982 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.099 -7.925 7.774 11.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.129 5.129 3 C -0.035 4.035 4 C -0.288 4.288 5 C 0.375 3.625 6 O -0.417 6.417 7 N -0.366 5.366 8 C 0.015 3.985 9 C -0.105 4.105 10 C -0.182 4.182 11 C -0.133 4.133 12 C -0.174 4.174 13 C 0.017 3.983 14 N -0.311 5.311 15 C -0.375 4.375 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.546 5.546 19 Si 0.726 3.274 20 H -0.203 1.203 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.060 3.940 24 C -0.021 4.021 25 Cl 0.057 6.943 26 N -0.114 5.114 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.211 0.789 31 H 0.237 0.763 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.036 0.964 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.249 -9.449 7.669 12.233 hybrid contribution -0.915 0.934 -0.096 1.311 sum -2.164 -8.515 7.573 11.599 Atomic orbital electron populations 1.22116 0.72590 1.05282 1.04485 1.48157 1.07167 1.03077 1.54528 1.23277 0.89756 0.94273 0.96189 1.20220 0.93606 0.92375 1.22579 1.17043 0.87274 0.81713 0.76448 1.90778 1.26299 1.73874 1.50709 1.45863 1.10710 1.05188 1.74879 1.21355 0.86519 0.89230 1.01364 1.21538 0.97262 0.91798 0.99938 1.21716 0.98356 1.02891 0.95274 1.21341 0.96050 0.95343 1.00591 1.22040 0.99151 0.95429 1.00775 1.20932 0.89789 0.93840 0.93772 1.44001 1.01810 1.00492 1.84828 1.19228 0.84897 1.03709 1.29678 0.91728 1.25005 0.98225 0.99509 0.96905 1.70066 1.32040 1.21687 1.30836 0.86313 0.85872 0.77653 0.77534 1.20277 1.21796 1.21765 1.20777 0.97703 0.85344 0.90161 1.22622 0.89324 0.90177 0.99946 1.98415 1.34720 1.64663 1.96506 1.77187 1.00104 1.07674 1.26463 0.89696 0.88655 0.88423 0.78907 0.76326 0.91763 0.92202 0.93836 0.91031 0.94461 0.93343 0.92528 0.93225 0.91977 0.96555 0.92980 0.93801 0.96386 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.66 11.44 59.85 0.68 1.34 16 2 N -0.35 -4.08 3.98 -67.60 -0.27 -4.35 16 3 C 0.12 1.43 10.99 -16.56 -0.18 1.25 16 4 C -0.27 -4.16 6.13 -105.04 -0.64 -4.80 16 5 C 0.59 10.02 7.81 -12.54 -0.10 9.92 16 6 O -0.54 -10.53 15.72 5.27 0.08 -10.45 16 7 N -0.71 -11.36 4.98 -61.39 -0.31 -11.67 16 8 C 0.14 2.26 4.57 -4.04 -0.02 2.25 16 9 C -0.10 -1.74 0.53 -154.39 -0.08 -1.82 16 10 C -0.13 -2.01 7.81 37.16 0.29 -1.72 16 11 C -0.10 -1.50 4.71 -26.69 -0.13 -1.62 16 12 C -0.13 -2.18 5.74 -26.62 -0.15 -2.33 16 13 C 0.14 2.81 6.52 -3.71 -0.02 2.79 16 14 N -0.59 -13.43 2.43 -172.32 -0.42 -13.85 16 15 C -0.25 -6.16 9.58 -15.06 -0.14 -6.30 16 16 H 0.07 1.62 7.89 -52.48 -0.41 1.21 16 17 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 18 N -0.90 -23.85 11.19 55.49 0.62 -23.23 16 19 Si 0.90 19.76 29.59 -169.99 -5.03 14.73 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 23 C 0.19 3.96 3.72 -3.71 -0.01 3.94 16 24 C 0.17 2.67 7.88 -16.91 -0.13 2.54 16 25 Cl 0.03 0.43 28.00 -51.86 -1.45 -1.02 16 26 N -0.29 -4.18 12.50 33.18 0.41 -3.76 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.19 1.89 7.46 -52.49 -0.39 1.50 16 31 H 0.40 6.06 5.14 -40.82 -0.21 5.85 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.04 0.68 6.87 -51.93 -0.36 0.32 16 35 H 0.07 1.27 5.97 -51.93 -0.31 0.96 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 40 H 0.06 1.01 6.33 -51.93 -0.33 0.68 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 43 H 0.25 6.46 8.31 -40.82 -0.34 6.12 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 1.97 4.96 -51.93 -0.26 1.72 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -30.93 372.49 -7.94 -38.87 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -6.47 Total: 3.73 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -0.73 Total: 5.39 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.04 Total: -56.86 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.45 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.03 Total: 14.73 kcal Atomic # 17 Polarization: 0.43 SS G_CDS: -1.45 Total: -1.02 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.93 -7.94 -38.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484176039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.829 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds