Wall clock time and date at job start Sat Apr 11 2020 06:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34236 * 125.73886 * 2 1 4 4 C 1.38065 * 107.43447 * 180.02562 * 3 2 1 5 5 C 1.47392 * 126.42008 * 179.97438 * 4 3 2 6 6 O 1.21611 * 119.99712 * 180.02562 * 5 4 3 7 7 N 1.34767 * 119.99882 * 359.97438 * 5 4 3 8 8 C 1.46509 * 120.00061 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47271 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.50012 * 59.99634 * 9 8 7 11 11 C 1.53033 * 109.52525 * 180.08179 * 9 8 7 12 12 C 1.53037 * 109.53926 * 181.32870 * 11 9 8 13 13 C 1.53187 * 109.31496 * 298.63545 * 12 11 9 14 14 N 1.46925 * 108.77814 * 54.63183 * 13 12 11 15 15 C 1.36934 * 120.63133 * 126.41593 * 14 13 12 16 16 H 1.08007 * 119.99989 * 331.82512 * 15 14 13 17 17 C 1.38811 * 120.00171 * 151.82752 * 15 14 13 18 18 N 1.31612 * 119.99807 * 343.07049 * 17 15 14 19 19 Si 1.86799 * 119.99900 * 163.06680 * 17 15 14 20 20 H 1.48498 * 109.47417 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46746 * 120.00122 * 19 17 15 22 22 H 1.48502 * 109.47082 * 239.99929 * 19 17 15 23 23 C 1.46923 * 118.73709 * 306.39854 * 14 13 12 24 24 C 1.41391 * 107.15768 * 0.22646 * 4 3 2 25 25 Cl 1.73605 * 126.00581 * 179.73478 * 24 4 3 26 26 N 1.30527 * 107.98823 * 359.62048 * 24 4 3 27 27 H 1.09000 * 109.47098 * 89.99092 * 1 2 3 28 28 H 1.08998 * 109.46757 * 209.99351 * 1 2 3 29 29 H 1.09001 * 109.46812 * 329.99305 * 1 2 3 30 30 H 1.07993 * 126.28317 * 0.03092 * 3 2 1 31 31 H 0.97006 * 120.00297 * 0.02562 * 7 5 4 32 32 H 1.08998 * 109.46679 * 59.99941 * 8 7 5 33 33 H 1.09003 * 109.46860 * 299.99850 * 8 7 5 34 34 H 1.09003 * 109.47006 * 299.93635 * 10 9 8 35 35 H 1.08995 * 109.47227 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.47195 * 59.93876 * 10 9 8 37 37 H 1.09003 * 109.45829 * 301.34863 * 11 9 8 38 38 H 1.09003 * 109.46142 * 61.30483 * 11 9 8 39 39 H 1.09008 * 109.49736 * 178.68060 * 12 11 9 40 40 H 1.09004 * 109.50006 * 58.58829 * 12 11 9 41 41 H 1.09006 * 109.58291 * 294.84531 * 13 12 11 42 42 H 1.08998 * 109.70663 * 174.49301 * 13 12 11 43 43 H 0.97005 * 120.00259 * 179.97438 * 18 17 15 44 44 H 1.09007 * 109.58487 * 293.81588 * 23 14 13 45 45 H 1.09003 * 109.70507 * 173.46217 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2491 1.0896 0.0000 4 6 3.5599 0.6560 -0.0006 5 6 4.7632 1.5072 -0.0013 6 8 5.8678 0.9985 -0.0023 7 7 4.6392 2.8491 -0.0020 8 6 5.8353 3.6953 -0.0033 9 6 5.4186 5.1674 -0.0032 10 6 4.5867 5.4627 1.2465 11 6 6.6671 6.0524 -0.0067 12 6 6.2509 7.5247 0.0269 13 6 5.4266 7.8468 -1.2234 14 7 4.3028 6.9039 -1.3049 15 6 3.0172 7.3594 -1.4265 16 1 2.7460 8.3246 -1.0247 17 6 2.0625 6.5807 -2.0660 18 7 2.4368 5.5819 -2.8370 19 14 0.2464 6.9504 -1.8322 20 1 0.0912 8.1156 -0.9248 21 1 -0.3684 7.2625 -3.1474 22 1 -0.4272 5.7673 -1.2391 23 6 4.5848 5.4628 -1.2539 24 6 3.5316 -0.7576 -0.0063 25 17 4.9153 -1.8061 -0.0158 26 7 2.2823 -1.1358 -0.0007 27 1 -0.3633 0.0002 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3633 0.8899 0.5140 30 1 1.9158 2.1168 0.0005 31 1 3.7581 3.2549 -0.0016 32 1 6.4280 3.4851 -0.8936 33 1 6.4292 3.4861 0.8864 34 1 3.6961 4.8342 1.2469 35 1 4.2905 6.5116 1.2463 36 1 5.1803 5.2524 2.1362 37 1 7.2745 5.8267 0.8698 38 1 7.2466 5.8593 -0.9094 39 1 7.1408 8.1539 0.0481 40 1 5.6505 7.7129 0.9170 41 1 6.0529 7.7464 -2.1099 42 1 5.0447 8.8657 -1.1595 43 1 1.7697 5.0374 -3.2836 44 1 5.1424 5.1679 -2.1429 45 1 3.6485 4.9065 -1.2087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484176039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:48 Heat of formation + Delta-G solvation = 35.204962 kcal Electronic energy + Delta-G solvation = -28401.274405 eV Core-core repulsion = 24481.174475 eV Total energy + Delta-G solvation = -3920.099930 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.56705 -40.71789 -39.49225 -37.83962 -36.22267 -34.84449 -34.25833 -33.08719 -31.79057 -31.32117 -28.21468 -27.85120 -27.22302 -26.71598 -24.10334 -23.56441 -22.35697 -21.90380 -21.16931 -19.70175 -18.86123 -18.43841 -17.34151 -16.98666 -16.86737 -16.52703 -16.08693 -16.03507 -15.65675 -15.35277 -15.03209 -14.98108 -14.80409 -14.44503 -14.30826 -14.13845 -13.74524 -13.67398 -13.55344 -13.04749 -12.95040 -12.69325 -12.66668 -12.64571 -12.54097 -12.20640 -12.06377 -11.92810 -11.78885 -11.66279 -11.35072 -11.18531 -10.91326 -10.84312 -10.56319 -10.46133 -10.09736 -9.73880 -8.55744 -7.77291 -5.22833 0.33495 0.34778 0.73451 1.49058 1.55878 1.64266 1.66971 2.31770 2.39803 2.58453 3.32256 3.34344 3.64524 3.71953 4.02469 4.08025 4.10100 4.11444 4.18276 4.38678 4.40661 4.42314 4.57952 4.62884 4.67490 4.74654 4.81449 4.85535 4.88880 5.05319 5.10280 5.18428 5.22906 5.35277 5.40078 5.46798 5.53745 5.59209 5.65966 5.69626 5.78918 5.85024 6.11581 6.48160 6.63131 7.24575 7.30840 7.94784 8.48627 9.28114 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010756 B = 0.004121 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.494088 B = 6792.441491 C = 8861.926931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.339 5.339 3 C 0.134 3.866 4 C -0.302 4.302 5 C 0.588 3.412 6 O -0.571 6.571 7 N -0.709 5.709 8 C 0.145 3.855 9 C -0.091 4.091 10 C -0.118 4.118 11 C -0.096 4.096 12 C -0.123 4.123 13 C 0.136 3.864 14 N -0.604 5.604 15 C -0.256 4.256 16 H 0.061 0.939 17 C -0.040 4.040 18 N -0.930 5.930 19 Si 0.956 3.044 20 H -0.274 1.274 21 H -0.303 1.303 22 H -0.275 1.275 23 C 0.198 3.802 24 C 0.156 3.844 25 Cl 0.022 6.978 26 N -0.303 5.303 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.126 0.874 30 H 0.221 0.779 31 H 0.405 0.595 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.004 0.996 42 H 0.050 0.950 43 H 0.249 0.751 44 H -0.022 1.022 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.302 -7.360 9.543 12.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.118 5.118 3 C -0.020 4.020 4 C -0.318 4.318 5 C 0.376 3.624 6 O -0.452 6.452 7 N -0.361 5.361 8 C 0.021 3.979 9 C -0.093 4.093 10 C -0.175 4.175 11 C -0.134 4.134 12 C -0.161 4.161 13 C 0.010 3.990 14 N -0.327 5.327 15 C -0.386 4.386 16 H 0.079 0.921 17 C -0.236 4.236 18 N -0.577 5.577 19 Si 0.785 3.215 20 H -0.199 1.199 21 H -0.231 1.231 22 H -0.201 1.201 23 C 0.072 3.928 24 C -0.036 4.036 25 Cl 0.050 6.950 26 N -0.129 5.129 27 H 0.115 0.885 28 H 0.126 0.874 29 H 0.144 0.856 30 H 0.237 0.763 31 H 0.242 0.758 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.022 0.978 42 H 0.068 0.932 43 H 0.059 0.941 44 H -0.004 1.004 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.468 -8.880 9.459 13.206 hybrid contribution -0.605 0.821 -0.722 1.250 sum -3.073 -8.059 8.737 12.276 Atomic orbital electron populations 1.22606 0.69648 1.07400 1.05912 1.48601 1.08604 1.02119 1.52496 1.23599 0.88806 0.95401 0.94166 1.20169 0.94188 0.92182 1.25219 1.17292 0.87491 0.81913 0.75690 1.90749 1.27632 1.74398 1.52375 1.45802 1.10786 1.04961 1.74523 1.21264 0.86668 0.88777 1.01169 1.21345 0.97357 0.92429 0.98158 1.21638 0.98614 1.01876 0.95421 1.21373 0.95601 0.94766 1.01620 1.21912 0.99546 0.96106 0.98578 1.21091 0.89315 0.93302 0.95257 1.44238 1.01992 1.01464 1.84965 1.19463 0.86165 1.03670 1.29312 0.92128 1.25622 1.01639 0.99564 0.96777 1.70214 1.32970 1.22667 1.31819 0.85390 0.81421 0.78006 0.76677 1.19912 1.23137 1.20108 1.20553 0.96984 0.84497 0.90726 1.22746 0.89647 0.90380 1.00845 1.98400 1.35205 1.64792 1.96569 1.77132 0.99944 1.09121 1.26712 0.88548 0.87396 0.85553 0.76300 0.75828 0.93449 0.90861 0.93648 0.92554 0.92031 0.90414 0.93260 0.90485 0.91579 0.97793 0.93156 0.94130 1.00355 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 11.44 127.77 1.46 2.34 16 2 N -0.34 -7.21 3.98 -367.78 -1.46 -8.67 16 3 C 0.13 3.05 10.99 84.28 0.93 3.97 16 4 C -0.30 -9.07 6.13 -20.13 -0.12 -9.20 16 5 C 0.59 20.00 7.81 86.65 0.68 20.68 16 6 O -0.57 -22.63 15.72 -4.06 -0.06 -22.69 16 7 N -0.71 -22.19 4.98 -466.40 -2.32 -24.51 16 8 C 0.15 4.62 4.57 86.38 0.39 5.02 16 9 C -0.09 -2.97 0.53 -52.11 -0.03 -2.99 16 10 C -0.12 -3.53 7.81 71.98 0.56 -2.96 16 11 C -0.10 -2.82 4.71 30.62 0.14 -2.68 16 12 C -0.12 -3.69 5.74 30.67 0.18 -3.52 16 13 C 0.14 5.30 6.52 86.36 0.56 5.87 16 14 N -0.60 -27.65 2.43 -699.09 -1.70 -29.35 16 15 C -0.26 -12.84 9.58 84.03 0.81 -12.04 16 16 H 0.06 3.03 7.89 -2.91 -0.02 3.01 16 17 C -0.04 -2.03 4.92 84.86 0.42 -1.61 16 18 N -0.93 -49.72 11.19 21.65 0.24 -49.48 16 19 Si 0.96 40.04 29.59 68.60 2.03 42.07 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 21 H -0.30 -13.29 7.11 99.48 0.71 -12.58 16 22 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 23 C 0.20 8.52 3.72 86.36 0.32 8.84 16 24 C 0.16 4.82 7.88 85.66 0.67 5.49 16 25 Cl 0.02 0.68 28.00 -2.72 -0.08 0.60 16 26 N -0.30 -8.47 12.50 -48.95 -0.61 -9.08 16 27 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.22 3.69 7.46 -2.91 -0.02 3.67 16 31 H 0.40 11.91 5.14 -92.70 -0.48 11.43 16 32 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.04 1.32 6.87 -2.39 -0.02 1.30 16 35 H 0.06 1.87 5.97 -2.39 -0.01 1.86 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 40 H 0.07 1.97 6.33 -2.38 -0.02 1.96 16 41 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 42 H 0.05 1.93 7.93 -2.39 -0.02 1.92 16 43 H 0.25 12.88 8.31 -92.70 -0.77 12.11 16 44 H -0.02 -1.08 8.14 -2.38 -0.02 -1.10 16 45 H 0.07 3.23 4.96 -2.39 -0.01 3.22 16 Total: -1.00 -68.04 372.49 3.54 -64.49 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.54 Total: 19.42 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 6.97 Total: 17.20 kcal Atomic # 7 Polarization: -115.24 SS G_CDS: -5.86 Total: -121.09 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.06 Total: -22.69 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Atomic # 17 Polarization: 0.68 SS G_CDS: -0.08 Total: 0.60 kcal Total: -68.04 3.54 -64.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484176039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.696 kcal (2) G-P(sol) polarization free energy of solvation -68.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds