Wall clock time and date at job start Sat Apr 11 2020 06:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86791 * 120.00207 * 2 1 4 4 H 1.48502 * 109.47120 * 240.00156 * 3 2 1 5 5 H 1.48495 * 109.47309 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47342 * 120.00247 * 3 2 1 7 7 C 1.38812 * 119.99554 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00025 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00499 * 359.97438 * 7 2 1 10 10 C 1.47029 * 125.64573 * 0.02984 * 9 7 2 11 11 C 1.54324 * 107.27130 * 178.91426 * 10 9 7 12 12 C 1.55158 * 102.94343 * 337.80744 * 11 10 9 13 13 O 1.42897 * 111.00329 * 277.38979 * 12 11 10 14 14 C 1.52997 * 111.00452 * 153.57325 * 12 11 10 15 15 N 1.46496 * 109.47194 * 184.99781 * 14 12 11 16 16 C 1.34777 * 120.00271 * 179.97438 * 15 14 12 17 17 O 1.21278 * 119.99854 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00161 * 180.02562 * 16 15 14 19 19 C 1.53000 * 109.46912 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.46886 * 180.02562 * 19 18 16 21 21 H 1.09001 * 110.53138 * 307.82576 * 20 19 18 22 22 N 1.47304 * 110.60359 * 70.82052 * 20 19 18 23 23 C 1.34536 * 106.61803 * 118.52536 * 22 20 19 24 24 O 1.21538 * 123.77115 * 179.97438 * 23 22 20 25 25 N 1.33794 * 112.45625 * 0.02562 * 23 22 20 26 26 C 1.34763 * 111.64541 * 359.97438 * 25 23 22 27 27 O 1.21239 * 127.15760 * 179.97438 * 26 25 23 28 28 C 1.47419 * 125.65328 * 179.97438 * 9 7 2 29 29 H 0.97000 * 119.99391 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.87995 * 59.49707 * 10 9 7 31 31 H 1.08995 * 110.00621 * 298.40754 * 10 9 7 32 32 H 1.09000 * 110.71997 * 219.43979 * 11 10 9 33 33 H 1.09001 * 110.87035 * 96.23678 * 11 10 9 34 34 H 0.96701 * 113.99897 * 176.82450 * 13 12 11 35 35 H 1.09002 * 109.47045 * 64.99908 * 14 12 11 36 36 H 1.09001 * 109.47375 * 304.99833 * 14 12 11 37 37 H 0.97005 * 120.00266 * 0.02562 * 15 14 12 38 38 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 39 39 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 40 40 H 1.09001 * 109.47194 * 299.99742 * 19 18 16 41 41 H 1.08992 * 109.47399 * 59.99914 * 19 18 16 42 42 H 0.96999 * 126.69744 * 298.51039 * 22 20 19 43 43 H 0.96996 * 124.17747 * 180.02562 * 25 23 22 44 44 H 1.09003 * 110.36850 * 85.31059 * 28 9 7 45 45 H 1.09004 * 110.36612 * 322.99058 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1376 -2.5328 -0.0006 11 6 -0.4486 -4.0441 -0.0285 12 6 0.8518 -4.6557 -0.6136 13 8 0.8579 -4.5771 -2.0404 14 6 1.0368 -6.1008 -0.1462 15 7 2.3286 -6.6052 -0.6183 16 6 2.7089 -7.8642 -0.3238 17 8 1.9814 -8.5797 0.3317 18 6 4.0380 -8.3828 -0.8091 19 6 4.2229 -9.8279 -0.3417 20 6 5.5726 -10.3543 -0.8338 21 1 5.6752 -10.1985 -1.9077 22 7 6.6779 -9.7080 -0.1053 23 6 7.3380 -10.6869 0.5397 24 8 8.3129 -10.4965 1.2400 25 7 6.8020 -11.8935 0.3230 26 6 5.7301 -11.8224 -0.4906 27 8 5.0364 -12.7416 -0.8699 28 6 1.9333 -3.7312 -0.0016 29 1 -0.4849 0.8401 0.0004 30 1 -0.5576 -2.0515 -0.8838 31 1 -0.5567 -2.0845 0.9002 32 1 -1.2987 -4.2509 -0.6786 33 1 -0.6334 -4.4211 0.9774 34 1 1.6717 -4.9028 -2.4488 35 1 0.2354 -6.7190 -0.5509 36 1 1.0087 -6.1368 0.9429 37 1 2.9106 -6.0328 -1.1423 38 1 4.8391 -7.7643 -0.4043 39 1 4.0663 -8.3471 -1.8981 40 1 4.1945 -9.8640 0.7474 41 1 3.4219 -10.4461 -0.7467 42 1 6.8888 -8.7613 -0.0932 43 1 7.1424 -12.7175 0.7051 44 1 2.1666 -4.0429 1.0165 45 1 2.8327 -3.7401 -0.6174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484249716.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:56 Heat of formation + Delta-G solvation = -105.909638 kcal Electronic energy + Delta-G solvation = -29287.521545 eV Core-core repulsion = 24920.593262 eV Total energy + Delta-G solvation = -4366.928283 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.85572 -40.11045 -39.11151 -38.57559 -36.92286 -35.25620 -35.04173 -34.23810 -32.76700 -32.14646 -29.81515 -28.87959 -27.76869 -25.76919 -24.30548 -23.43398 -22.94643 -21.86162 -20.84209 -20.16938 -19.88483 -18.89129 -17.80355 -17.49691 -17.12013 -16.96477 -16.48059 -16.29106 -16.16620 -15.81054 -15.58797 -14.91470 -14.74370 -14.66625 -14.47774 -14.19934 -13.82895 -13.67368 -13.24962 -13.15438 -12.90842 -12.50322 -12.29836 -11.97264 -11.77339 -11.67080 -11.49125 -11.04521 -10.91722 -10.89546 -10.80193 -10.78183 -10.42124 -10.30706 -10.18355 -10.08006 -9.93200 -9.79002 -9.49242 -9.21413 -8.63345 -6.88677 -5.75903 -3.09988 1.05718 1.89466 2.42221 2.49805 2.57355 2.94423 3.36805 3.40869 3.41066 3.42775 4.00762 4.20329 4.37680 4.42127 4.42741 4.63209 4.70026 4.81720 4.85635 5.02639 5.07102 5.30876 5.36071 5.46764 5.50323 5.58767 5.59858 5.76163 5.89231 6.11189 6.20527 6.20724 6.28934 6.37590 6.37703 6.48264 6.54259 6.84251 7.25996 7.48195 7.58944 7.61830 7.78813 7.90657 8.01022 8.20644 9.15946 9.76163 10.41032 11.35668 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.002042 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.107269 B =13709.099263 C =14904.817882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.232 4.232 8 H 0.076 0.924 9 N -0.598 5.598 10 C 0.181 3.819 11 C -0.128 4.128 12 C 0.101 3.899 13 O -0.536 6.536 14 C 0.103 3.897 15 N -0.725 5.725 16 C 0.513 3.487 17 O -0.540 6.540 18 C -0.141 4.141 19 C -0.105 4.105 20 C 0.092 3.908 21 H 0.134 0.866 22 N -0.721 5.721 23 C 0.704 3.296 24 O -0.543 6.543 25 N -0.680 5.680 26 C 0.530 3.470 27 O -0.462 6.462 28 C 0.118 3.882 29 H 0.254 0.746 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.362 0.638 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.399 0.601 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.443 0.557 43 H 0.433 0.567 44 H 0.026 0.974 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.647 -21.392 -3.984 24.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.361 4.361 8 H 0.094 0.906 9 N -0.324 5.324 10 C 0.057 3.943 11 C -0.167 4.167 12 C 0.059 3.941 13 O -0.340 6.340 14 C -0.021 4.021 15 N -0.378 5.378 16 C 0.299 3.701 17 O -0.417 6.417 18 C -0.181 4.181 19 C -0.144 4.144 20 C -0.017 4.017 21 H 0.151 0.849 22 N -0.387 5.387 23 C 0.403 3.597 24 O -0.416 6.416 25 N -0.352 5.352 26 C 0.315 3.685 27 O -0.330 6.330 28 C -0.009 4.009 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.208 0.792 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.234 0.766 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.105 0.895 41 H 0.119 0.881 42 H 0.288 0.712 43 H 0.276 0.724 44 H 0.043 0.957 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.529 -21.736 -3.274 23.958 hybrid contribution 1.560 1.053 -0.171 1.890 sum 11.089 -20.683 -3.445 23.719 Atomic orbital electron populations 1.69951 1.04901 1.25263 1.56534 1.24815 0.95737 0.97727 1.02009 0.86183 0.78450 0.83136 0.77855 1.21154 1.21548 1.21170 1.18960 0.90291 0.82345 1.44467 0.90583 1.44333 1.01631 0.99439 1.87029 1.21135 0.84237 0.87652 1.01300 1.22912 0.94840 0.99684 0.99274 1.22723 0.99309 0.90803 0.81243 1.86662 1.41739 1.87306 1.18252 1.22053 0.84673 0.94985 1.00356 1.46003 1.21383 1.14128 1.56245 1.20458 0.88087 0.81596 0.79990 1.90738 1.55027 1.56743 1.39166 1.21652 0.96172 0.96919 1.03373 1.21565 0.93686 0.95758 1.03376 1.22205 0.89641 0.89688 1.00191 0.84862 1.45608 1.31238 1.10109 1.51751 1.15858 0.82565 0.80986 0.80248 1.91086 1.26297 1.83134 1.41080 1.44332 1.30990 1.11529 1.48313 1.20754 0.79250 0.91282 0.77214 1.90881 1.45837 1.43815 1.52469 1.22118 0.94102 0.87467 0.97214 0.93601 0.93121 0.93762 0.90932 0.90911 0.79198 0.90725 0.90376 0.76610 0.88547 0.87964 0.89530 0.88090 0.71238 0.72430 0.95678 0.94460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.69 10.31 55.49 0.57 -26.12 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.67 29.55 -169.99 -5.02 16.64 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.23 -6.30 10.28 -15.06 -0.15 -6.45 16 8 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.60 -14.68 3.39 -170.08 -0.58 -15.26 16 10 C 0.18 4.32 5.37 -3.06 -0.02 4.30 16 11 C -0.13 -2.31 6.16 -24.90 -0.15 -2.46 16 12 C 0.10 1.59 0.95 -88.48 -0.08 1.51 16 13 O -0.54 -8.49 13.19 -35.23 -0.46 -8.96 16 14 C 0.10 1.32 4.88 -4.05 -0.02 1.30 16 15 N -0.73 -6.93 5.18 -60.30 -0.31 -7.24 16 16 C 0.51 4.93 7.83 -10.98 -0.09 4.84 16 17 O -0.54 -7.52 15.98 5.56 0.09 -7.43 16 18 C -0.14 -0.64 5.64 -27.88 -0.16 -0.80 16 19 C -0.10 -0.56 4.25 -26.73 -0.11 -0.68 16 20 C 0.09 0.34 3.64 -68.21 -0.25 0.10 16 21 H 0.13 0.17 8.14 -51.93 -0.42 -0.26 16 22 N -0.72 -3.01 6.06 -59.19 -0.36 -3.37 16 23 C 0.70 5.08 8.99 -88.01 -0.79 4.29 16 24 O -0.54 -6.13 18.04 5.33 0.10 -6.03 16 25 N -0.68 -3.83 5.70 -15.79 -0.09 -3.92 16 26 C 0.53 3.30 8.14 -10.55 -0.09 3.21 16 27 O -0.46 -4.33 18.02 5.59 0.10 -4.23 16 28 C 0.12 2.18 5.98 -2.54 -0.02 2.17 16 29 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.05 1.37 7.38 -51.93 -0.38 0.99 16 31 H 0.04 1.16 7.50 -51.93 -0.39 0.77 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.18 8.03 -51.93 -0.42 0.76 16 34 H 0.36 4.08 8.07 45.56 0.37 4.45 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 37 H 0.40 2.90 7.31 -40.82 -0.30 2.60 16 38 H 0.10 0.26 7.68 -51.93 -0.40 -0.14 16 39 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 40 H 0.09 0.61 8.10 -51.93 -0.42 0.19 16 41 H 0.10 0.67 8.10 -51.93 -0.42 0.25 16 42 H 0.44 1.10 8.61 -40.82 -0.35 0.75 16 43 H 0.43 1.77 8.96 -40.82 -0.37 1.41 16 44 H 0.03 0.47 8.04 -51.93 -0.42 0.05 16 45 H 0.04 0.63 8.02 -51.93 -0.42 0.22 16 LS Contribution 377.00 15.07 5.68 5.68 Total: -1.00 -38.09 377.00 -7.88 -45.97 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.57 Total: 3.21 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: -2.02 Total: 11.06 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.77 Total: -55.91 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.18 Total: -26.65 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.09 -7.88 -45.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484249716.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.941 kcal (2) G-P(sol) polarization free energy of solvation -38.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds