Wall clock time and date at job start Sat Apr 11 2020 06:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86791 * 120.00207 * 2 1 4 4 H 1.48502 * 109.47120 * 240.00156 * 3 2 1 5 5 H 1.48495 * 109.47309 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47342 * 120.00247 * 3 2 1 7 7 C 1.38812 * 119.99554 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00025 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00499 * 359.97438 * 7 2 1 10 10 C 1.47029 * 125.64573 * 0.02984 * 9 7 2 11 11 C 1.54324 * 107.27130 * 178.91426 * 10 9 7 12 12 C 1.55158 * 102.94343 * 337.80744 * 11 10 9 13 13 O 1.42897 * 111.00329 * 277.38979 * 12 11 10 14 14 C 1.52997 * 111.00452 * 153.57325 * 12 11 10 15 15 N 1.46496 * 109.47194 * 184.99781 * 14 12 11 16 16 C 1.34777 * 120.00271 * 179.97438 * 15 14 12 17 17 O 1.21278 * 119.99854 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00161 * 180.02562 * 16 15 14 19 19 C 1.53000 * 109.46912 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.46886 * 180.02562 * 19 18 16 21 21 H 1.09001 * 110.53138 * 307.82576 * 20 19 18 22 22 N 1.47304 * 110.60359 * 70.82052 * 20 19 18 23 23 C 1.34536 * 106.61803 * 118.52536 * 22 20 19 24 24 O 1.21538 * 123.77115 * 179.97438 * 23 22 20 25 25 N 1.33794 * 112.45625 * 0.02562 * 23 22 20 26 26 C 1.34763 * 111.64541 * 359.97438 * 25 23 22 27 27 O 1.21239 * 127.15760 * 179.97438 * 26 25 23 28 28 C 1.47419 * 125.65328 * 179.97438 * 9 7 2 29 29 H 0.97000 * 119.99391 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.87995 * 59.49707 * 10 9 7 31 31 H 1.08995 * 110.00621 * 298.40754 * 10 9 7 32 32 H 1.09000 * 110.71997 * 219.43979 * 11 10 9 33 33 H 1.09001 * 110.87035 * 96.23678 * 11 10 9 34 34 H 0.96701 * 113.99897 * 176.82450 * 13 12 11 35 35 H 1.09002 * 109.47045 * 64.99908 * 14 12 11 36 36 H 1.09001 * 109.47375 * 304.99833 * 14 12 11 37 37 H 0.97005 * 120.00266 * 0.02562 * 15 14 12 38 38 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 39 39 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 40 40 H 1.09001 * 109.47194 * 299.99742 * 19 18 16 41 41 H 1.08992 * 109.47399 * 59.99914 * 19 18 16 42 42 H 0.96999 * 126.69744 * 298.51039 * 22 20 19 43 43 H 0.96996 * 124.17747 * 180.02562 * 25 23 22 44 44 H 1.09003 * 110.36850 * 85.31059 * 28 9 7 45 45 H 1.09004 * 110.36612 * 322.99058 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1376 -2.5328 -0.0006 11 6 -0.4486 -4.0441 -0.0285 12 6 0.8518 -4.6557 -0.6136 13 8 0.8579 -4.5771 -2.0404 14 6 1.0368 -6.1008 -0.1462 15 7 2.3286 -6.6052 -0.6183 16 6 2.7089 -7.8642 -0.3238 17 8 1.9814 -8.5797 0.3317 18 6 4.0380 -8.3828 -0.8091 19 6 4.2229 -9.8279 -0.3417 20 6 5.5726 -10.3543 -0.8338 21 1 5.6752 -10.1985 -1.9077 22 7 6.6779 -9.7080 -0.1053 23 6 7.3380 -10.6869 0.5397 24 8 8.3129 -10.4965 1.2400 25 7 6.8020 -11.8935 0.3230 26 6 5.7301 -11.8224 -0.4906 27 8 5.0364 -12.7416 -0.8699 28 6 1.9333 -3.7312 -0.0016 29 1 -0.4849 0.8401 0.0004 30 1 -0.5576 -2.0515 -0.8838 31 1 -0.5567 -2.0845 0.9002 32 1 -1.2987 -4.2509 -0.6786 33 1 -0.6334 -4.4211 0.9774 34 1 1.6717 -4.9028 -2.4488 35 1 0.2354 -6.7190 -0.5509 36 1 1.0087 -6.1368 0.9429 37 1 2.9106 -6.0328 -1.1423 38 1 4.8391 -7.7643 -0.4043 39 1 4.0663 -8.3471 -1.8981 40 1 4.1945 -9.8640 0.7474 41 1 3.4219 -10.4461 -0.7467 42 1 6.8888 -8.7613 -0.0932 43 1 7.1424 -12.7175 0.7051 44 1 2.1666 -4.0429 1.0165 45 1 2.8327 -3.7401 -0.6174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484249716.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:55 Heat of formation + Delta-G solvation = -141.528157 kcal Electronic energy + Delta-G solvation = -29289.066080 eV Core-core repulsion = 24920.593262 eV Total energy + Delta-G solvation = -4368.472818 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.35037 -41.03170 -39.85647 -39.69753 -37.52517 -36.75356 -35.60778 -35.22861 -33.99653 -33.21627 -31.40879 -30.02734 -28.68687 -27.30777 -25.50903 -24.28324 -23.57571 -22.39985 -22.14187 -21.39504 -21.14377 -19.39858 -18.92298 -18.57289 -17.97944 -17.69889 -17.37389 -16.89366 -16.85554 -16.69460 -16.59538 -16.36102 -15.89037 -15.68438 -15.42120 -15.28468 -15.05230 -14.80471 -14.27155 -14.04612 -13.85591 -13.76962 -13.37710 -13.21350 -12.95276 -12.90706 -12.71776 -12.33972 -12.19283 -12.09838 -12.02891 -11.97215 -11.77668 -11.68321 -11.48468 -11.37364 -10.95460 -10.79045 -10.66120 -10.49670 -10.09376 -8.87300 -7.83255 -5.18672 0.54306 1.45243 1.47210 1.50431 1.56627 1.71877 1.96439 2.11944 2.26741 2.50656 2.96050 3.21537 3.36182 3.48825 3.54498 3.69025 3.89674 3.91679 3.96160 4.01197 4.27176 4.35950 4.42151 4.51445 4.61161 4.69205 4.74998 4.86415 4.95514 4.97555 5.00267 5.07556 5.12233 5.18041 5.40421 5.46120 5.64812 5.77843 5.83438 5.89917 6.20456 6.39645 6.55969 6.88934 7.10606 7.13703 7.30015 7.78765 8.42647 9.27302 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.002042 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.107269 B =13709.099263 C =14904.817882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.071 4.071 3 Si 0.979 3.021 4 H -0.274 1.274 5 H -0.299 1.299 6 H -0.276 1.276 7 C -0.240 4.240 8 H 0.088 0.912 9 N -0.622 5.622 10 C 0.190 3.810 11 C -0.123 4.123 12 C 0.124 3.876 13 O -0.553 6.553 14 C 0.119 3.881 15 N -0.718 5.718 16 C 0.509 3.491 17 O -0.588 6.588 18 C -0.131 4.131 19 C -0.101 4.101 20 C 0.106 3.894 21 H 0.175 0.825 22 N -0.702 5.702 23 C 0.703 3.297 24 O -0.587 6.587 25 N -0.676 5.676 26 C 0.530 3.470 27 O -0.496 6.496 28 C 0.113 3.887 29 H 0.245 0.755 30 H 0.007 0.993 31 H 0.006 0.994 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.384 0.616 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.414 0.586 38 H 0.124 0.876 39 H 0.141 0.859 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.453 0.547 43 H 0.438 0.562 44 H 0.032 0.968 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.801 -22.212 -5.352 26.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.263 4.263 3 Si 0.808 3.192 4 H -0.200 1.200 5 H -0.225 1.225 6 H -0.202 1.202 7 C -0.369 4.369 8 H 0.106 0.894 9 N -0.348 5.348 10 C 0.064 3.936 11 C -0.162 4.162 12 C 0.081 3.919 13 O -0.360 6.360 14 C -0.006 4.006 15 N -0.371 5.371 16 C 0.298 3.702 17 O -0.468 6.468 18 C -0.170 4.170 19 C -0.140 4.140 20 C -0.002 4.002 21 H 0.192 0.808 22 N -0.368 5.368 23 C 0.402 3.598 24 O -0.464 6.464 25 N -0.346 5.346 26 C 0.317 3.683 27 O -0.367 6.367 28 C -0.012 4.012 29 H 0.054 0.946 30 H 0.025 0.975 31 H 0.024 0.976 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.233 0.767 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.251 0.749 38 H 0.142 0.858 39 H 0.159 0.841 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.301 0.699 43 H 0.281 0.719 44 H 0.050 0.950 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.739 -22.568 -4.680 25.865 hybrid contribution 0.889 1.250 0.256 1.555 sum 12.628 -21.318 -4.424 25.169 Atomic orbital electron populations 1.70199 1.06452 1.25247 1.58349 1.25696 0.96580 1.01242 1.02815 0.85139 0.77064 0.78732 0.78311 1.20023 1.22539 1.20238 1.19440 0.91095 0.83570 1.42772 0.89432 1.44637 1.02120 1.01138 1.86882 1.20812 0.84203 0.91127 0.97431 1.22791 0.96652 0.95680 1.01080 1.22360 0.96404 0.91859 0.81244 1.86629 1.43541 1.87731 1.18087 1.21647 0.86523 0.92623 0.99821 1.45883 1.20363 1.14590 1.56253 1.21331 0.89270 0.80806 0.78824 1.90733 1.56859 1.57873 1.41332 1.21721 0.93588 0.96027 1.05703 1.21454 0.93967 0.96459 1.02085 1.22247 0.88429 0.87479 1.02060 0.80802 1.45552 1.30429 1.10233 1.50628 1.15976 0.82206 0.81625 0.79953 1.91062 1.28387 1.83787 1.43143 1.44314 1.30765 1.11582 1.47935 1.21120 0.78571 0.92130 0.76509 1.90872 1.46879 1.45195 1.53734 1.22362 0.95548 0.85118 0.98172 0.94555 0.97500 0.97552 0.90148 0.88995 0.76656 0.90861 0.91096 0.74902 0.85753 0.84102 0.91664 0.89344 0.69908 0.71929 0.94989 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.48 10.31 21.65 0.22 -57.26 16 2 C -0.07 -3.96 5.49 84.86 0.47 -3.50 16 3 Si 0.98 44.88 29.55 68.60 2.03 46.91 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.24 -12.94 10.28 84.03 0.86 -12.08 16 8 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.62 -30.45 3.39 -692.02 -2.35 -32.79 16 10 C 0.19 9.31 5.37 86.73 0.47 9.78 16 11 C -0.12 -4.38 6.16 31.78 0.20 -4.18 16 12 C 0.12 3.61 0.95 -9.41 -0.01 3.60 16 13 O -0.55 -16.10 13.19 -148.98 -1.96 -18.07 16 14 C 0.12 2.72 4.88 86.38 0.42 3.14 16 15 N -0.72 -11.07 5.18 -463.07 -2.40 -13.47 16 16 C 0.51 8.13 7.83 87.66 0.69 8.82 16 17 O -0.59 -15.40 15.98 -3.02 -0.05 -15.45 16 18 C -0.13 -0.58 5.64 29.85 0.17 -0.42 16 19 C -0.10 -0.78 4.25 30.59 0.13 -0.65 16 20 C 0.11 0.42 3.64 44.38 0.16 0.59 16 21 H 0.18 -0.53 8.14 -2.39 -0.02 -0.55 16 22 N -0.70 -3.62 6.06 -459.60 -2.79 -6.41 16 23 C 0.70 9.02 8.99 179.44 1.61 10.63 16 24 O -0.59 -12.83 18.04 -3.84 -0.07 -12.89 16 25 N -0.68 -6.83 5.70 -441.11 -2.52 -9.34 16 26 C 0.53 5.69 8.14 87.94 0.72 6.41 16 27 O -0.50 -8.84 18.02 -2.90 -0.05 -8.89 16 28 C 0.11 3.95 5.98 86.85 0.52 4.47 16 29 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 30 H 0.01 0.38 7.38 -2.39 -0.02 0.37 16 31 H 0.01 0.35 7.50 -2.39 -0.02 0.33 16 32 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.09 2.89 8.03 -2.39 -0.02 2.87 16 34 H 0.38 7.20 8.07 -74.06 -0.60 6.60 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.07 1.77 8.13 -2.39 -0.02 1.75 16 37 H 0.41 4.04 7.31 -92.70 -0.68 3.36 16 38 H 0.12 -0.05 7.68 -2.39 -0.02 -0.06 16 39 H 0.14 -0.33 8.14 -2.39 -0.02 -0.35 16 40 H 0.06 0.82 8.10 -2.39 -0.02 0.80 16 41 H 0.09 0.99 8.10 -2.39 -0.02 0.97 16 42 H 0.45 0.46 8.61 -92.71 -0.80 -0.34 16 43 H 0.44 3.39 8.96 -92.71 -0.83 2.55 16 44 H 0.03 1.11 8.04 -2.39 -0.02 1.09 16 45 H 0.06 1.83 8.02 -2.39 -0.02 1.81 16 Total: -1.00 -87.99 377.00 -5.36 -93.35 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -1.82 Total: 7.71 kcal Atomic # 6 Polarization: 20.20 SS G_CDS: 6.40 Total: 26.60 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -9.82 Total: -119.27 kcal Atomic # 8 Polarization: -53.17 SS G_CDS: -2.13 Total: -55.30 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -87.99 -5.36 -93.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484249716.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.176 kcal (2) G-P(sol) polarization free energy of solvation -87.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds