Wall clock time and date at job start Sat Apr 11 2020 06:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48501 * 109.46922 * 90.00236 * 3 2 1 5 5 H 1.48496 * 109.47354 * 210.00432 * 3 2 1 6 6 H 1.48501 * 109.47428 * 330.00540 * 3 2 1 7 7 C 1.38812 * 119.99535 * 180.28285 * 2 1 3 8 8 H 1.07999 * 120.00285 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99632 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47341 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47351 * 179.97438 * 11 10 9 13 13 H 1.08997 * 110.88084 * 51.12107 * 12 11 10 14 14 C 1.55153 * 111.00432 * 287.20006 * 12 11 10 15 15 C 1.54321 * 102.93911 * 206.42356 * 14 12 11 16 16 N 1.47017 * 107.27593 * 22.19123 * 15 14 12 17 17 C 1.34771 * 125.65342 * 181.02361 * 16 15 14 18 18 O 1.21280 * 120.00217 * 180.02562 * 17 16 15 19 19 C 1.50701 * 120.00038 * 0.04179 * 17 16 15 20 20 C 1.52992 * 109.47345 * 179.97438 * 19 17 16 21 21 N 1.46500 * 109.47105 * 180.02562 * 20 19 17 22 22 C 1.35047 * 126.03689 * 124.71789 * 21 20 19 23 23 C 1.35379 * 107.72918 * 179.84095 * 22 21 20 24 24 Cl 1.73602 * 126.04858 * 180.16305 * 23 22 21 25 25 C 1.39923 * 107.90585 * 0.41904 * 23 22 21 26 26 N 1.30851 * 108.21317 * 359.74188 * 25 23 22 27 27 C 1.47432 * 108.70147 * 1.06138 * 16 15 14 28 28 H 0.97005 * 119.99717 * 359.71788 * 1 2 3 29 29 H 0.97004 * 120.00593 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.47136 * 300.00161 * 10 9 7 31 31 H 1.09002 * 109.47352 * 60.00193 * 10 9 7 32 32 H 1.08997 * 109.47244 * 300.00414 * 11 10 9 33 33 H 1.09002 * 109.46787 * 59.99789 * 11 10 9 34 34 H 1.09006 * 110.71969 * 324.78377 * 14 12 11 35 35 H 1.08996 * 110.72647 * 88.06042 * 14 12 11 36 36 H 1.09006 * 109.88180 * 262.77187 * 15 14 12 37 37 H 1.09005 * 110.01098 * 141.68242 * 15 14 12 38 38 H 1.08999 * 109.47506 * 300.00101 * 19 17 16 39 39 H 1.09006 * 109.47065 * 59.99628 * 19 17 16 40 40 H 1.09000 * 109.47636 * 300.00093 * 20 19 17 41 41 H 1.08998 * 109.47453 * 60.00113 * 20 19 17 42 42 H 1.07999 * 126.13941 * 359.97437 * 22 21 20 43 43 H 1.08000 * 125.89514 * 179.71418 * 25 23 22 44 44 H 1.08997 * 110.36464 * 217.03686 * 27 16 15 45 45 H 1.08993 * 110.45939 * 94.75711 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4401 -0.7001 6 1 1.4478 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0059 8 1 1.4702 -2.1375 -0.0101 9 7 3.3796 -1.2022 -0.0065 10 6 4.1120 -2.4709 -0.0122 11 6 5.6163 -2.1915 -0.0109 12 6 6.3813 -3.5165 -0.0162 13 1 6.0220 -4.1694 -0.8117 14 6 6.2883 -4.2179 1.3646 15 6 7.5736 -5.0710 1.4061 16 7 8.5270 -4.4703 0.4618 17 6 9.7635 -4.9336 0.1925 18 8 10.4670 -4.3548 -0.6080 19 6 10.2720 -6.1713 0.8859 20 6 11.6911 -6.4792 0.4041 21 7 12.1851 -7.6827 1.0777 22 6 12.6564 -8.7947 0.4733 23 6 13.0139 -9.6703 1.4418 24 17 13.6831 -11.2526 1.1922 25 6 12.7432 -9.0767 2.6797 26 7 12.2465 -7.8858 2.4623 27 6 7.9065 -3.2765 -0.1412 28 1 -0.4850 0.8401 0.0041 29 1 3.8647 -0.3622 -0.0031 30 1 3.8490 -3.0463 0.8755 31 1 3.8484 -3.0387 -0.9045 32 1 5.8797 -1.6159 -0.8982 33 1 5.8796 -1.6239 0.8816 34 1 6.2863 -3.4840 2.1706 35 1 5.4030 -4.8516 1.4165 36 1 7.3491 -6.0944 1.1057 37 1 7.9937 -5.0638 2.4120 38 1 10.2815 -6.0063 1.9633 39 1 9.6191 -7.0125 0.6529 40 1 11.6813 -6.6444 -0.6733 41 1 12.3443 -5.6382 0.6367 42 1 12.7360 -8.9556 -0.5917 43 1 12.9142 -9.5244 3.6475 44 1 8.1922 -3.1891 -1.1894 45 1 8.1955 -2.3794 0.4062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484551093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:10 Heat of formation + Delta-G solvation = 46.160353 kcal Electronic energy + Delta-G solvation = -25684.568662 eV Core-core repulsion = 21764.943793 eV Total energy + Delta-G solvation = -3919.624869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -41.80756 -40.45100 -38.20840 -36.88514 -35.41817 -34.78605 -33.15695 -31.43671 -30.99847 -29.95601 -29.80178 -27.83399 -25.34329 -23.63893 -23.07721 -21.75372 -21.53423 -21.21433 -20.38338 -19.46707 -18.24685 -17.62042 -17.14947 -16.71416 -16.04678 -15.91215 -15.07876 -15.03422 -14.75199 -14.50338 -14.39657 -14.07588 -13.87340 -13.71982 -13.38394 -13.28392 -13.03207 -12.80342 -12.76788 -12.37474 -12.25000 -11.97194 -11.86903 -11.79532 -11.65451 -11.34061 -10.96513 -10.92001 -10.77962 -10.58926 -10.47894 -10.30330 -10.14516 -10.07565 -9.61814 -8.99147 -8.94534 -8.91832 -7.26011 -5.79434 -3.15153 1.18427 1.41701 2.07181 2.20513 2.23989 2.64181 3.35427 3.38107 3.43515 3.87005 4.01961 4.20663 4.22265 4.34679 4.40598 4.54958 4.56842 4.63608 4.72899 4.83479 4.92276 5.04449 5.11740 5.14492 5.20675 5.24933 5.39565 5.44612 5.52882 5.61990 5.66593 5.73556 5.82190 5.86862 5.93057 6.01165 6.07525 6.22347 6.24830 6.67706 6.71835 6.99070 7.13105 7.71901 7.96695 8.39653 9.18821 9.91285 10.10838 11.38966 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.035412 B = 0.001461 C = 0.001434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.494985 B =19166.852071 C =19525.814762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.291 1.291 7 C -0.246 4.246 8 H 0.090 0.910 9 N -0.758 5.758 10 C 0.159 3.841 11 C -0.120 4.120 12 C -0.094 4.094 13 H 0.087 0.913 14 C -0.128 4.128 15 C 0.097 3.903 16 N -0.615 5.615 17 C 0.534 3.466 18 O -0.545 6.545 19 C -0.149 4.149 20 C 0.151 3.849 21 N -0.363 5.363 22 C 0.077 3.923 23 C -0.191 4.191 24 Cl -0.043 7.043 25 C 0.065 3.935 26 N -0.280 5.280 27 C 0.109 3.891 28 H 0.259 0.741 29 H 0.361 0.639 30 H 0.028 0.972 31 H 0.025 0.975 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.184 0.816 43 H 0.192 0.808 44 H 0.079 0.921 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.552 -20.688 3.381 35.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.203 1.203 6 H -0.217 1.217 7 C -0.376 4.376 8 H 0.107 0.893 9 N -0.403 5.403 10 C 0.032 3.968 11 C -0.158 4.158 12 C -0.114 4.114 13 H 0.106 0.894 14 C -0.166 4.166 15 C -0.026 4.026 16 N -0.348 5.348 17 C 0.322 3.678 18 O -0.423 6.423 19 C -0.190 4.190 20 C 0.030 3.970 21 N -0.145 5.145 22 C -0.071 4.071 23 C -0.229 4.229 24 Cl -0.015 7.015 25 C -0.122 4.122 26 N -0.102 5.102 27 C -0.013 4.013 28 H 0.070 0.930 29 H 0.193 0.807 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.128 0.872 39 H 0.118 0.882 40 H 0.128 0.872 41 H 0.118 0.882 42 H 0.201 0.799 43 H 0.209 0.791 44 H 0.098 0.902 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 28.311 -19.419 3.372 34.496 hybrid contribution 0.790 0.255 -0.335 0.896 sum 29.101 -19.164 3.036 34.977 Atomic orbital electron populations 1.69708 1.05123 1.25852 1.57528 1.24684 0.95254 0.97259 1.01993 0.86528 0.79206 0.84897 0.77768 1.21077 1.20333 1.21695 1.19060 0.80663 0.94743 1.43103 0.89257 1.42723 1.04089 1.02312 1.91223 1.20601 0.88318 0.89322 0.98596 1.21726 0.96406 0.95249 1.02443 1.22330 0.93136 0.98175 0.97736 0.89417 1.22761 0.96357 0.99361 0.98084 1.22169 0.89872 0.97618 0.92892 1.48498 1.14242 1.28864 1.43207 1.19901 0.80268 0.85439 0.82230 1.90742 1.55741 1.60075 1.35746 1.21857 0.96554 0.97274 1.03307 1.21541 0.94510 0.84216 0.96719 1.48584 1.48263 1.13208 1.04476 1.22327 0.98508 0.86737 0.99568 1.20798 1.16411 0.91804 0.93927 1.98338 1.84283 1.22015 1.96879 1.23921 0.97975 0.91661 0.98625 1.77492 1.22818 1.17733 0.92111 1.22382 0.92273 0.87392 0.99293 0.93049 0.80694 0.95441 0.95684 0.91511 0.91564 0.89964 0.89293 0.91234 0.91143 0.87234 0.88154 0.87243 0.88204 0.79856 0.79121 0.90210 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.23 13.97 55.49 0.78 -28.46 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 3 Si 0.89 21.94 27.74 -169.99 -4.71 17.23 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.28 -6.44 6.52 56.52 0.37 -6.08 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.25 -6.92 10.47 -15.06 -0.16 -7.08 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.76 -17.68 5.41 -59.91 -0.32 -18.00 16 10 C 0.16 2.85 6.16 -4.04 -0.02 2.83 16 11 C -0.12 -1.61 4.84 -26.73 -0.13 -1.74 16 12 C -0.09 -0.98 3.01 -88.47 -0.27 -1.24 16 13 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 14 C -0.13 -1.12 5.90 -24.90 -0.15 -1.27 16 15 C 0.10 0.72 6.49 -3.07 -0.02 0.70 16 16 N -0.61 -5.80 3.33 -170.52 -0.57 -6.37 16 17 C 0.53 5.20 7.85 -10.99 -0.09 5.11 16 18 O -0.54 -7.09 16.24 5.56 0.09 -7.00 16 19 C -0.15 -0.99 5.08 -27.89 -0.14 -1.13 16 20 C 0.15 0.96 5.80 -4.05 -0.02 0.94 16 21 N -0.36 -2.62 3.68 -61.33 -0.23 -2.85 16 22 C 0.08 0.47 11.43 -17.16 -0.20 0.28 16 23 C -0.19 -1.33 6.65 -39.97 -0.27 -1.59 16 24 Cl -0.04 -0.28 29.30 -51.86 -1.52 -1.80 16 25 C 0.07 0.47 12.02 -17.34 -0.21 0.26 16 26 N -0.28 -2.42 12.42 30.64 0.38 -2.04 16 27 C 0.11 1.13 6.38 -2.53 -0.02 1.11 16 28 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 29 H 0.36 8.19 5.53 -40.82 -0.23 7.97 16 30 H 0.03 0.49 7.75 -51.93 -0.40 0.09 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.87 7.97 -51.93 -0.41 0.46 16 34 H 0.08 0.75 7.91 -51.93 -0.41 0.34 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.11 0.56 8.03 -51.93 -0.42 0.14 16 41 H 0.10 0.70 8.10 -51.93 -0.42 0.28 16 42 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.19 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 45 H 0.07 0.75 8.03 -51.93 -0.42 0.34 16 LS Contribution 389.35 15.07 5.87 5.87 Total: -1.00 -34.62 389.35 -8.96 -43.59 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.94 Total: 2.65 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.78 Total: -2.81 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: 0.04 Total: -57.72 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: 0.09 Total: -7.00 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.23 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.52 Total: -1.80 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.62 -8.96 -43.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484551093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.746 kcal (2) G-P(sol) polarization free energy of solvation -34.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds