Wall clock time and date at job start Sat Apr 11 2020 06:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48501 * 109.46922 * 90.00236 * 3 2 1 5 5 H 1.48496 * 109.47354 * 210.00432 * 3 2 1 6 6 H 1.48501 * 109.47428 * 330.00540 * 3 2 1 7 7 C 1.38812 * 119.99535 * 180.28285 * 2 1 3 8 8 H 1.07999 * 120.00285 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99632 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47341 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47351 * 179.97438 * 11 10 9 13 13 H 1.08997 * 110.88084 * 51.12107 * 12 11 10 14 14 C 1.55153 * 111.00432 * 287.20006 * 12 11 10 15 15 C 1.54321 * 102.93911 * 206.42356 * 14 12 11 16 16 N 1.47017 * 107.27593 * 22.19123 * 15 14 12 17 17 C 1.34771 * 125.65342 * 181.02361 * 16 15 14 18 18 O 1.21280 * 120.00217 * 180.02562 * 17 16 15 19 19 C 1.50701 * 120.00038 * 0.04179 * 17 16 15 20 20 C 1.52992 * 109.47345 * 179.97438 * 19 17 16 21 21 N 1.46500 * 109.47105 * 180.02562 * 20 19 17 22 22 C 1.35047 * 126.03689 * 124.71789 * 21 20 19 23 23 C 1.35379 * 107.72918 * 179.84095 * 22 21 20 24 24 Cl 1.73602 * 126.04858 * 180.16305 * 23 22 21 25 25 C 1.39923 * 107.90585 * 0.41904 * 23 22 21 26 26 N 1.30851 * 108.21317 * 359.74188 * 25 23 22 27 27 C 1.47432 * 108.70147 * 1.06138 * 16 15 14 28 28 H 0.97005 * 119.99717 * 359.71788 * 1 2 3 29 29 H 0.97004 * 120.00593 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.47136 * 300.00161 * 10 9 7 31 31 H 1.09002 * 109.47352 * 60.00193 * 10 9 7 32 32 H 1.08997 * 109.47244 * 300.00414 * 11 10 9 33 33 H 1.09002 * 109.46787 * 59.99789 * 11 10 9 34 34 H 1.09006 * 110.71969 * 324.78377 * 14 12 11 35 35 H 1.08996 * 110.72647 * 88.06042 * 14 12 11 36 36 H 1.09006 * 109.88180 * 262.77187 * 15 14 12 37 37 H 1.09005 * 110.01098 * 141.68242 * 15 14 12 38 38 H 1.08999 * 109.47506 * 300.00101 * 19 17 16 39 39 H 1.09006 * 109.47065 * 59.99628 * 19 17 16 40 40 H 1.09000 * 109.47636 * 300.00093 * 20 19 17 41 41 H 1.08998 * 109.47453 * 60.00113 * 20 19 17 42 42 H 1.07999 * 126.13941 * 359.97437 * 22 21 20 43 43 H 1.08000 * 125.89514 * 179.71418 * 25 23 22 44 44 H 1.08997 * 110.36464 * 217.03686 * 27 16 15 45 45 H 1.08993 * 110.45939 * 94.75711 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4401 -0.7001 6 1 1.4478 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0059 8 1 1.4702 -2.1375 -0.0101 9 7 3.3796 -1.2022 -0.0065 10 6 4.1120 -2.4709 -0.0122 11 6 5.6163 -2.1915 -0.0109 12 6 6.3813 -3.5165 -0.0162 13 1 6.0220 -4.1694 -0.8117 14 6 6.2883 -4.2179 1.3646 15 6 7.5736 -5.0710 1.4061 16 7 8.5270 -4.4703 0.4618 17 6 9.7635 -4.9336 0.1925 18 8 10.4670 -4.3548 -0.6080 19 6 10.2720 -6.1713 0.8859 20 6 11.6911 -6.4792 0.4041 21 7 12.1851 -7.6827 1.0777 22 6 12.6564 -8.7947 0.4733 23 6 13.0139 -9.6703 1.4418 24 17 13.6831 -11.2526 1.1922 25 6 12.7432 -9.0767 2.6797 26 7 12.2465 -7.8858 2.4623 27 6 7.9065 -3.2765 -0.1412 28 1 -0.4850 0.8401 0.0041 29 1 3.8647 -0.3622 -0.0031 30 1 3.8490 -3.0463 0.8755 31 1 3.8484 -3.0387 -0.9045 32 1 5.8797 -1.6159 -0.8982 33 1 5.8796 -1.6239 0.8816 34 1 6.2863 -3.4840 2.1706 35 1 5.4030 -4.8516 1.4165 36 1 7.3491 -6.0944 1.1057 37 1 7.9937 -5.0638 2.4120 38 1 10.2815 -6.0063 1.9633 39 1 9.6191 -7.0125 0.6529 40 1 11.6813 -6.6444 -0.6733 41 1 12.3443 -5.6382 0.6367 42 1 12.7360 -8.9556 -0.5917 43 1 12.9142 -9.5244 3.6475 44 1 8.1922 -3.1891 -1.1894 45 1 8.1955 -2.3794 0.4062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484551093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:09 Heat of formation + Delta-G solvation = 24.087932 kcal Electronic energy + Delta-G solvation = -25685.525794 eV Core-core repulsion = 21764.943793 eV Total energy + Delta-G solvation = -3920.582001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.30366 -41.20478 -39.06003 -37.37536 -36.99614 -35.33820 -34.57354 -33.04652 -31.69305 -30.72189 -30.51789 -28.98953 -26.23562 -24.98354 -23.86534 -23.03480 -22.23016 -21.86029 -21.30895 -20.20429 -19.60064 -18.79630 -17.79241 -17.45107 -16.78173 -16.63833 -16.49510 -15.88006 -15.74021 -15.59312 -15.30630 -15.09914 -14.78918 -14.49994 -14.34993 -14.26186 -14.09069 -13.86101 -13.50052 -13.41782 -13.21168 -12.92740 -12.81231 -12.77015 -12.47818 -12.43887 -12.28774 -12.05629 -11.89613 -11.74079 -11.56437 -11.51850 -11.45974 -11.10035 -10.94847 -10.61155 -9.73594 -9.44407 -9.28897 -8.03031 -5.36515 0.70303 0.93162 1.38441 1.41841 1.47497 1.49394 1.57655 1.71862 1.98573 2.48685 3.27892 3.29300 3.43796 3.51312 3.64528 3.71622 3.78300 3.86324 4.00564 4.01517 4.24083 4.28651 4.34622 4.35893 4.45367 4.53966 4.58880 4.60160 4.66116 4.73570 4.77437 4.84235 4.86975 4.97244 5.07015 5.19484 5.28104 5.35326 5.36544 5.44912 5.76022 5.79184 6.21312 6.41672 6.49356 6.98403 7.08522 7.85525 8.03657 9.18470 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.035412 B = 0.001461 C = 0.001434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.494985 B =19166.852071 C =19525.814762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.957 3.043 4 H -0.277 1.277 5 H -0.251 1.251 6 H -0.297 1.297 7 C -0.237 4.237 8 H 0.056 0.944 9 N -0.762 5.762 10 C 0.155 3.845 11 C -0.107 4.107 12 C -0.086 4.086 13 H 0.088 0.912 14 C -0.127 4.127 15 C 0.100 3.900 16 N -0.617 5.617 17 C 0.532 3.468 18 O -0.582 6.582 19 C -0.135 4.135 20 C 0.152 3.848 21 N -0.367 5.367 22 C 0.081 3.919 23 C -0.205 4.205 24 Cl -0.043 7.043 25 C 0.062 3.938 26 N -0.311 5.311 27 C 0.111 3.889 28 H 0.258 0.742 29 H 0.366 0.634 30 H 0.032 0.968 31 H 0.020 0.980 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.123 0.877 41 H 0.090 0.910 42 H 0.211 0.789 43 H 0.209 0.791 44 H 0.069 0.931 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.652 -21.289 3.714 37.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.257 4.257 3 Si 0.784 3.216 4 H -0.203 1.203 5 H -0.175 1.175 6 H -0.224 1.224 7 C -0.368 4.368 8 H 0.074 0.926 9 N -0.408 5.408 10 C 0.029 3.971 11 C -0.145 4.145 12 C -0.106 4.106 13 H 0.107 0.893 14 C -0.165 4.165 15 C -0.022 4.022 16 N -0.349 5.349 17 C 0.322 3.678 18 O -0.463 6.463 19 C -0.175 4.175 20 C 0.032 3.968 21 N -0.149 5.149 22 C -0.067 4.067 23 C -0.243 4.243 24 Cl -0.015 7.015 25 C -0.124 4.124 26 N -0.132 5.132 27 C -0.012 4.012 28 H 0.066 0.934 29 H 0.199 0.801 30 H 0.050 0.950 31 H 0.038 0.962 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.141 0.859 41 H 0.108 0.892 42 H 0.227 0.773 43 H 0.226 0.774 44 H 0.087 0.913 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 30.450 -20.063 3.723 36.655 hybrid contribution 0.116 0.318 -0.444 0.559 sum 30.567 -19.745 3.279 36.536 Atomic orbital electron populations 1.69895 1.07201 1.26714 1.59688 1.25545 0.96145 1.01396 1.02575 0.85377 0.78639 0.79396 0.78174 1.20271 1.17548 1.22350 1.19065 0.82884 0.93494 1.41393 0.92575 1.42776 1.02507 1.04509 1.91026 1.20799 0.90829 0.87157 0.98339 1.21572 0.93238 0.97008 1.02727 1.22175 0.92739 0.96689 0.98994 0.89345 1.22765 0.97415 0.99512 0.96773 1.22275 0.88659 0.97970 0.93325 1.48586 1.14515 1.28563 1.43268 1.20383 0.79898 0.85853 0.81712 1.90725 1.56722 1.61355 1.37517 1.21753 0.96802 0.96070 1.02898 1.21541 0.94112 0.83812 0.97371 1.48627 1.48465 1.13572 1.04215 1.22797 0.97187 0.86000 1.00744 1.20932 1.17089 0.92106 0.94195 1.98337 1.84309 1.21960 1.96865 1.24295 0.97183 0.91321 0.99623 1.77451 1.24134 1.18564 0.93042 1.22252 0.92110 0.88007 0.98829 0.93350 0.80114 0.95021 0.96165 0.91609 0.90947 0.90089 0.88840 0.89423 0.89541 0.86953 0.86613 0.85931 0.89219 0.77256 0.77398 0.91272 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.98 13.97 21.65 0.30 -62.68 16 2 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 3 Si 0.96 45.00 27.74 68.60 1.90 46.90 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.25 -10.58 6.52 99.48 0.65 -9.93 16 6 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 7 C -0.24 -13.48 10.47 84.03 0.88 -12.60 16 8 H 0.06 3.49 8.06 -2.91 -0.02 3.46 16 9 N -0.76 -34.76 5.41 -343.45 -1.86 -36.61 16 10 C 0.15 5.37 6.16 86.38 0.53 5.90 16 11 C -0.11 -2.67 4.84 30.60 0.15 -2.52 16 12 C -0.09 -1.63 3.01 -9.40 -0.03 -1.66 16 13 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 14 C -0.13 -1.92 5.90 31.78 0.19 -1.73 16 15 C 0.10 1.18 6.49 86.73 0.56 1.74 16 16 N -0.62 -10.36 3.33 -811.80 -2.70 -13.06 16 17 C 0.53 9.50 7.85 87.66 0.69 10.19 16 18 O -0.58 -14.67 16.24 -3.03 -0.05 -14.72 16 19 C -0.13 -1.50 5.08 29.85 0.15 -1.35 16 20 C 0.15 1.70 5.80 86.38 0.50 2.20 16 21 N -0.37 -4.69 3.68 -347.94 -1.28 -5.97 16 22 C 0.08 0.84 11.43 83.54 0.95 1.80 16 23 C -0.20 -2.53 6.65 22.02 0.15 -2.39 16 24 Cl -0.04 -0.50 29.30 -2.72 -0.08 -0.58 16 25 C 0.06 0.81 12.02 85.25 1.02 1.83 16 26 N -0.31 -4.94 12.42 -56.98 -0.71 -5.65 16 27 C 0.11 2.12 6.38 86.85 0.55 2.67 16 28 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 29 H 0.37 15.82 5.53 -92.71 -0.51 15.30 16 30 H 0.03 1.09 7.75 -2.38 -0.02 1.07 16 31 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.07 1.74 7.97 -2.39 -0.02 1.72 16 34 H 0.08 1.27 7.91 -2.38 -0.02 1.25 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.12 1.03 8.03 -2.39 -0.02 1.01 16 41 H 0.09 1.20 8.10 -2.39 -0.02 1.18 16 42 H 0.21 0.84 8.06 -2.91 -0.02 0.82 16 43 H 0.21 1.63 8.06 -2.91 -0.02 1.60 16 44 H 0.07 1.48 8.04 -2.39 -0.02 1.46 16 45 H 0.07 1.37 8.03 -2.39 -0.02 1.35 16 Total: -1.00 -75.47 389.35 2.72 -72.75 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.42 Total: 18.90 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 6.77 Total: 0.74 kcal Atomic # 7 Polarization: -117.73 SS G_CDS: -6.24 Total: -123.97 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.05 Total: -14.72 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.90 Total: 46.90 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -0.08 Total: -0.58 kcal Total: -75.47 2.72 -72.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484551093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.834 kcal (2) G-P(sol) polarization free energy of solvation -75.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds