Wall clock time and date at job start Sat Apr 11 2020 06:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30416 * 125.97444 * 2 1 4 4 N 1.39928 * 108.95621 * 180.02562 * 3 2 1 5 5 C 1.46506 * 125.74581 * 179.97438 * 4 3 2 6 6 C 1.34343 * 108.50361 * 0.26678 * 4 3 2 7 7 Cl 1.73597 * 126.31917 * 179.73474 * 6 4 3 8 8 C 1.38279 * 107.35938 * 359.57788 * 6 4 3 9 9 C 1.47301 * 126.43388 * 180.15973 * 8 6 4 10 10 O 1.21624 * 120.00036 * 270.30209 * 9 8 6 11 11 N 1.34780 * 120.00054 * 90.30567 * 9 8 6 12 12 C 1.46921 * 120.62989 * 359.71765 * 11 9 8 13 13 C 1.53625 * 108.54521 * 126.36652 * 12 11 9 14 14 C 1.53047 * 109.23737 * 54.85741 * 13 12 11 15 15 C 1.53041 * 109.53692 * 298.51381 * 14 13 12 16 16 H 1.09001 * 109.49753 * 301.40757 * 15 14 13 17 17 C 1.53005 * 109.52217 * 181.33577 * 15 14 13 18 18 N 1.46497 * 109.46913 * 175.14320 * 17 15 14 19 19 C 1.36939 * 119.99946 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99885 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00360 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99653 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00363 * 180.02562 * 21 19 18 24 24 H 1.48509 * 109.46636 * 60.00469 * 23 21 19 25 25 H 1.48493 * 109.47164 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47327 * 300.01106 * 23 21 19 27 27 C 1.46929 * 120.62931 * 179.97438 * 11 9 8 28 28 H 1.08997 * 109.46670 * 89.97694 * 1 2 3 29 29 H 1.08994 * 109.47061 * 209.97547 * 1 2 3 30 30 H 1.09001 * 109.46889 * 329.98068 * 1 2 3 31 31 H 1.09001 * 109.47060 * 90.03166 * 5 4 3 32 32 H 1.09004 * 109.47073 * 210.02655 * 5 4 3 33 33 H 1.09000 * 109.47212 * 330.02738 * 5 4 3 34 34 H 1.08997 * 109.58674 * 246.20393 * 12 11 9 35 35 H 1.09003 * 109.58807 * 6.63078 * 12 11 9 36 36 H 1.09003 * 109.63545 * 294.86912 * 13 12 11 37 37 H 1.08993 * 109.43674 * 174.72283 * 13 12 11 38 38 H 1.08996 * 109.45692 * 178.49556 * 14 13 12 39 39 H 1.08997 * 109.45042 * 58.52419 * 14 13 12 40 40 H 1.08999 * 109.46968 * 295.13890 * 17 15 14 41 41 H 1.08995 * 109.47279 * 55.14494 * 17 15 14 42 42 H 0.97001 * 120.00554 * 359.97438 * 18 17 15 43 43 H 0.96999 * 119.99620 * 179.97438 * 22 21 19 44 44 H 1.08995 * 109.58802 * 353.37613 * 27 11 9 45 45 H 1.09001 * 109.58308 * 113.65399 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2731 1.0554 0.0000 4 7 3.6111 0.6459 -0.0006 5 6 4.7775 1.5324 -0.0013 6 6 3.6459 -0.6971 -0.0069 7 17 5.0708 -1.6886 -0.0166 8 6 2.3373 -1.1437 -0.0006 9 6 1.8922 -2.5479 -0.0008 10 8 1.7080 -3.1273 -1.0542 11 7 1.6890 -3.1906 1.1663 12 6 1.9132 -2.5060 2.4468 13 6 0.6419 -2.6361 3.2995 14 6 0.2742 -4.1156 3.4341 15 6 -0.0133 -4.6996 2.0491 16 1 -0.8262 -4.1440 1.5815 17 6 -0.4132 -6.1700 2.1871 18 7 -0.7998 -6.6961 0.8756 19 6 -1.1981 -8.0003 0.7514 20 1 -1.2276 -8.6410 1.6203 21 6 -1.5649 -8.4987 -0.4911 22 7 -1.5294 -7.7178 -1.5500 23 14 -2.1089 -10.2777 -0.6605 24 1 -3.3053 -10.5123 0.1876 25 1 -2.4442 -10.5599 -2.0793 26 1 -1.0093 -11.1753 -0.2241 27 6 1.2445 -4.5910 1.1822 28 1 -0.3632 0.0004 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5141 31 1 5.0676 1.7520 1.0262 32 1 5.6049 1.0438 -0.5159 33 1 4.5279 2.4609 -0.5147 34 1 2.7533 -2.9674 2.9657 35 1 2.1269 -1.4526 2.2655 36 1 -0.1771 -2.0998 2.8202 37 1 0.8237 -2.2150 4.2882 38 1 -0.6122 -4.2138 4.0608 39 1 1.1036 -4.6556 3.8908 40 1 0.4309 -6.7413 2.5733 41 1 -1.2545 -6.2547 2.8749 42 1 -0.7736 -6.1206 0.0952 43 1 -1.7854 -8.0661 -2.4184 44 1 1.0171 -4.9137 0.1663 45 1 2.0322 -5.2196 1.5976 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491163942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:41 Heat of formation + Delta-G solvation = 45.338432 kcal Electronic energy + Delta-G solvation = -28015.235832 eV Core-core repulsion = 24095.575322 eV Total energy + Delta-G solvation = -3919.660510 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.78764 -39.70017 -37.39672 -37.30325 -34.86007 -34.38067 -32.80830 -31.62027 -30.77917 -29.89903 -29.47242 -26.61189 -25.44396 -25.08012 -23.08566 -22.38379 -21.28261 -20.69758 -19.99736 -19.03878 -17.66509 -16.98437 -16.67748 -16.13013 -15.74240 -15.42537 -14.71291 -14.63471 -14.36588 -14.14204 -13.84567 -13.66108 -13.45904 -13.43469 -13.07822 -12.99416 -12.84061 -12.69286 -12.56851 -12.41710 -12.28056 -12.05743 -11.99956 -11.45336 -11.03615 -11.02136 -10.96743 -10.77385 -10.59299 -10.35767 -10.23440 -9.97088 -9.74774 -9.56358 -9.54756 -8.83454 -8.79342 -8.41783 -6.83042 -5.65821 -2.95546 0.98939 1.14295 2.06883 2.16822 2.67433 3.20241 3.50250 3.54161 3.55941 3.98304 4.47167 4.64363 4.66178 4.70429 4.80455 4.83374 4.92177 4.94184 5.07327 5.13748 5.27920 5.39533 5.45063 5.53090 5.55286 5.63972 5.67381 5.71601 5.87080 5.90786 6.01540 6.09225 6.16131 6.18720 6.23597 6.26597 6.45915 6.61060 6.73012 6.83248 6.94190 7.14662 7.56520 7.77575 8.35706 8.51966 9.62794 10.21133 10.55362 11.56355 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016322 B = 0.002894 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.038388 B = 9672.748197 C =10050.455726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.122 3.878 3 N -0.274 5.274 4 N -0.356 5.356 5 C 0.094 3.906 6 C 0.153 3.847 7 Cl 0.012 6.988 8 C -0.244 4.244 9 C 0.591 3.409 10 O -0.516 6.516 11 N -0.600 5.600 12 C 0.111 3.889 13 C -0.132 4.132 14 C -0.112 4.112 15 C -0.106 4.106 16 H 0.075 0.925 17 C 0.161 3.839 18 N -0.733 5.733 19 C -0.242 4.242 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.929 5.929 23 Si 0.906 3.094 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.287 1.287 27 C 0.121 3.879 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.019 0.981 41 H 0.021 0.979 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.105 0.895 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.299 22.032 9.470 27.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.045 4.045 3 N -0.097 5.097 4 N -0.138 5.138 5 C -0.047 4.047 6 C -0.004 4.004 7 Cl 0.040 6.960 8 C -0.261 4.261 9 C 0.376 3.624 10 O -0.391 6.391 11 N -0.333 5.333 12 C -0.012 4.012 13 C -0.170 4.170 14 C -0.150 4.150 15 C -0.126 4.126 16 H 0.093 0.907 17 C 0.033 3.967 18 N -0.378 5.378 19 C -0.373 4.373 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.577 5.577 23 Si 0.737 3.263 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.001 4.001 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.037 0.963 41 H 0.039 0.961 42 H 0.220 0.780 43 H 0.065 0.935 44 H 0.123 0.877 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.467 22.816 8.913 27.953 hybrid contribution 0.117 -1.662 -0.349 1.702 sum 13.583 21.154 8.564 26.558 Atomic orbital electron populations 1.20338 0.85160 1.04011 1.04266 1.22328 0.97237 0.88199 0.96703 1.77277 0.84719 1.21476 1.26254 1.48337 1.06633 1.02586 1.56258 1.22054 0.83849 0.94568 1.04229 1.21914 0.89888 0.84141 1.04446 1.98442 1.35326 1.65510 1.96681 1.19835 0.90276 0.95538 1.20408 1.17159 0.77459 0.83992 0.83779 1.90878 1.50313 1.67084 1.30777 1.48088 1.66509 1.13577 1.05152 1.21745 0.97776 0.97407 0.84306 1.21981 0.97657 0.97797 0.99559 1.21524 1.01683 0.94608 0.97189 1.21679 0.97513 0.98346 0.95066 0.90689 1.20626 0.96593 0.89704 0.89792 1.42409 1.80268 1.10879 1.04207 1.19150 1.36896 0.87692 0.93585 0.91332 1.24752 1.02491 0.97951 0.95707 1.69667 1.54324 1.34953 0.98785 0.86292 0.78424 0.85001 0.76581 1.21363 1.21734 1.21344 1.21751 0.95593 0.79273 1.03455 0.89348 0.89770 0.90007 0.89801 0.89077 0.88284 0.91505 0.90533 0.91416 0.91072 0.91513 0.91794 0.96296 0.96097 0.78041 0.93451 0.87715 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.28 36.01 0.37 -0.44 16 2 C 0.12 1.52 7.18 -82.02 -0.59 0.93 16 3 N -0.27 -3.27 12.49 33.90 0.42 -2.85 16 4 N -0.36 -3.68 3.98 -64.31 -0.26 -3.94 16 5 C 0.09 0.52 11.28 59.85 0.68 1.20 16 6 C 0.15 1.83 7.54 -16.44 -0.12 1.70 16 7 Cl 0.01 0.13 28.56 -51.86 -1.48 -1.35 16 8 C -0.24 -3.39 3.85 -105.02 -0.40 -3.80 16 9 C 0.59 9.82 7.08 -12.57 -0.09 9.73 16 10 O -0.52 -11.02 16.52 5.26 0.09 -10.94 16 11 N -0.60 -8.81 2.97 -173.84 -0.52 -9.32 16 12 C 0.11 1.22 6.37 -3.49 -0.02 1.20 16 13 C -0.13 -1.32 6.10 -26.38 -0.16 -1.49 16 14 C -0.11 -1.35 5.17 -26.69 -0.14 -1.49 16 15 C -0.11 -1.72 2.37 -90.52 -0.21 -1.94 16 16 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 17 C 0.16 3.23 5.66 -4.04 -0.02 3.21 16 18 N -0.73 -18.97 5.38 -59.91 -0.32 -19.29 16 19 C -0.24 -6.92 9.99 -15.06 -0.15 -7.08 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -29.11 13.06 55.49 0.72 -28.38 16 23 Si 0.91 22.96 29.55 -169.99 -5.02 17.93 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 C 0.12 2.05 5.51 -3.73 -0.02 2.03 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 0.89 8.01 -51.93 -0.42 0.48 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.39 7.76 -51.93 -0.40 -0.01 16 33 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.80 6.27 -51.93 -0.33 0.47 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.39 10.67 6.89 -40.82 -0.28 10.39 16 43 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 44 H 0.10 2.23 6.20 -51.93 -0.32 1.91 16 45 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 384.81 15.07 5.80 5.80 Total: -1.00 -35.57 384.81 -8.34 -43.91 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.79 Total: 5.13 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -0.99 Total: 3.30 kcal Atomic # 7 Polarization: -63.84 SS G_CDS: 0.05 Total: -63.79 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -1.48 Total: -1.35 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.57 -8.34 -43.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491163942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.250 kcal (2) G-P(sol) polarization free energy of solvation -35.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds